Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003062

Physical Location & Seq

Genomic Coordinates Reverse (-)

29935458 .. 29938461

Gene Structure 3004 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028895

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGTCAATTGGTTCAGATCGAAGGTGCTGCAGCTTTTGTTCATCAACGACTACGTCTCCTCCAGCCAAATTGATTAACCACCGTTGCCAGCGCCAGTTTCCGATTGCACTTGGTCCAATGACTTCCAGTGGCTTTTTTCTTTTTGGTTTCGTTATGGTTTATTTCACCAGCTCCGGAGACTCACCGATGGTGTATCCGGACTGCGGCAGTGGCTTCATCGAGGAGATCGGCAACCCGGCCCGCTCCGCCCACGTGGATTCGTGCCGCAGGGGGAGTTCCGTTGCTGCGATAATTTCAAGCTCCTTGTGCTTTCTTCCTGTGAGGGATTCAGTACTGATGGCCTTGCCTCCATTGCGGCTAACTTCCAGGCCTGTCATGAATCATGATATGGTTTGTCCTAATGCTGTTGAACCACTTTTCAAACAAATGGTGAACAAATTTATAGATGATCATGCACAGCCAGAGATTAGAGGGCACGCCTATCAGCTTAATCCTAATGCCCCTAAAGAAAGAGTTGATAAGAGAATTATCTGCTTAGTTGAAAGTTCTTGTCCCAGAAATGTTGAAATCGAAATTGCAACATGGTGGGTTAAAATGTGGGGGGTACTATGCGAGAGCGTGCTACCAGACTTTTTGTGCTTAAATCTACCTCGTAGAGAAGATTCCAAAGAAGCTGCTGGCAAAGAAATGAGTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051603 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1117 zf-RING_2 zinc_ribbon_9

Protein Analysis

233

Amino Acids

25.75

Weight (kDa)

7.5

Isoelectric Point (pI)

64.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003062)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07951
malus_domestica	MD12G1248200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0318681 RchiOBHm_Chr1g0319091 RchiOBHm_Chr2g0125271 RchiOBHm_Chr4g0426301 RchiOBHm_Chr7g0187311
rosa_laevigata	RLG00000006896 RLG00000028895
rosa_multiflora	Rmu_sc0001747.1_g000005 Rmu_sc0001877.1_g000012 Rmu_sc0001904.1_g000006 Rmu_sc0002983.1_g000016 Rmu_sc0006382.1_g000008 Rmu_sc0007285.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011350 Rroxscaffold_1G00037350 Rroxscaffold_1G00045990 Rroxscaffold_1G00049060 Rroxscaffold_1G00070310 Rroxscaffold_3G00222330 Rroxscaffold_4G00307450 Rroxscaffold_5G00385990 Rroxscaffold_6G00407860 Rroxscaffold_6G00428470
rosa_rugosa	Rorug01G0107800 Rorug03G0135100 Rorug03G0135200
rosa_samantha	Rh2AG155600 Rh2AG341400 Rh2BG161900 Rh2BG322800 Rh3BG144800 Rh3BG291400 Rh3BG291500 Rh4CG112300 Rh5DG415000
rosa_wichuraiana	Rw6G014080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	243
AccIII	TCCGGA	2 cut(s)	173, 196
AciI	CCGC	5 cut(s)	204, 241, 246, 265, 355
AcsI	RAATTY	1 cut(s)	437
AcvI	CACGTG	1 cut(s)	253
AfaI	GTAC	3 cut(s)	333, 606, 694
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	5 cut(s)	297, 410, 421, 542, 566
AjnI	CCWGG	1 cut(s)	365
AluBI	AGCT	5 cut(s)	33, 171, 300, 487, 674
AluI	AGCT	5 cut(s)	33, 171, 300, 487, 674
Alw26I	GTCTC	2 cut(s)	60, 171
Aor13HI	TCCGGA	2 cut(s)	173, 196
AoxI	GGCC	3 cut(s)	237, 339, 368
ApeKI	GCWGC	4 cut(s)	27, 30, 284, 674
ApoI	RAATTY	1 cut(s)	437
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	2 cut(s)	113, 238
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	3 cut(s)	157, 174, 442
AvaII	GGWCC	1 cut(s)	113
BaeGI	GKGCMC	1 cut(s)	477
BbrPI	CACGTG	1 cut(s)	253
BbvI	GCAGC	4 cut(s)	14, 42, 271, 661
BccI	CCATC	2 cut(s)	181, 331
BcgI	CGANNNNNNTGC	2 cut(s)	9, 43
BciT130I	CCWGG	1 cut(s)	367
BciVI	GTATCC	1 cut(s)	204
BclI	TGATCA	1 cut(s)	448
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	2 cut(s)	60, 171
BfmI	CTRYAG	1 cut(s)	28
BfoI	RGCGCY	1 cut(s)	94
BfuI	GTATCC	1 cut(s)	204
BisI	GCNGC	7 cut(s)	28, 31, 205, 265, 285, 356, 675
BlsI	GCNGC	7 cut(s)	29, 32, 206, 266, 286, 357, 676
BmcAI	AGTACT	1 cut(s)	333
Bme1390I	CCNGG	2 cut(s)	236, 367
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	2 cut(s)	113, 238
BmrFI	CCNGG	2 cut(s)	236, 367
BpmI	CTGGAG	1 cut(s)	45
BpuMI	CCSGG	1 cut(s)	236
BsaAI	YACGTR	2 cut(s)	253, 696
BsaWI	WCCGGW	2 cut(s)	173, 196
BsaXI	ACNNNNNCTCC	4 cut(s)	40, 43, 70, 73
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	2 cut(s)	94, 126
Bse3DI	GCAATG	1 cut(s)	350
BseAI	TCCGGA	2 cut(s)	173, 196
BseBI	CCWGG	1 cut(s)	367
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMI	GCAATG	1 cut(s)	350
BseNI	ACTGG	2 cut(s)	94, 126
BseRI	GAGGAG	2 cut(s)	48, 236
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	4 cut(s)	14, 42, 271, 661
BshFI	GGCC	3 cut(s)	239, 341, 370
BsiSI	CCGG	3 cut(s)	174, 197, 236
BslFI	GGGAC	1 cut(s)	537
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	2 cut(s)	60, 171
BsmBI	CGTCTC	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	537
BsnI	GGCC	3 cut(s)	239, 341, 370
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp13I	TCCGGA	2 cut(s)	173, 196
Bsp143I	GATC	3 cut(s)	16, 225, 448
BspACI	CCGC	5 cut(s)	204, 241, 246, 265, 355
BspANI	GGCC	3 cut(s)	239, 341, 370
BspEI	TCCGGA	2 cut(s)	173, 196
BspHI	TCATGA	2 cut(s)	375, 382
BspMAI	CTGCAG	1 cut(s)	32
BsrBI	CCGCTC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	350
BsrI	ACTGG	2 cut(s)	94, 126
BssMI	GATC	3 cut(s)	16, 225, 448
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	1 cut(s)	83
BstBAI	YACGTR	2 cut(s)	253, 696
BstC8I	GCNNGC	5 cut(s)	89, 241, 477, 620, 679
BstDEI	CTNAG	1 cut(s)	535
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	3 cut(s)	19, 228, 451
BstMAI	GTCTC	2 cut(s)	60, 171
BstMBI	GATC	3 cut(s)	16, 225, 448
BstMWI	GCNNNNNNNGC	4 cut(s)	210, 245, 306, 352
BstNI	CCWGG	1 cut(s)	367
BstSCI	CCNGG	2 cut(s)	234, 365
BstSFI	CTRYAG	1 cut(s)	28
BstSLI	GKGCMC	1 cut(s)	477
BstV1I	GCAGC	4 cut(s)	14, 42, 271, 661
BsuI	GTATCC	1 cut(s)	204
BsuRI	GGCC	3 cut(s)	239, 341, 370
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	2 cut(s)	133, 214
Cac8I	GCNNGC	5 cut(s)	89, 241, 477, 620, 679
CciI	TCATGA	2 cut(s)	375, 382
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	2 cut(s)	113, 238
Csp6I	GTAC	3 cut(s)	332, 605, 693
CviAII	CATG	4 cut(s)	376, 383, 452, 582
CviQI	GTAC	3 cut(s)	332, 605, 693
DdeI	CTNAG	1 cut(s)	535
DpnI	GATC	3 cut(s)	18, 227, 450
DpnII	GATC	3 cut(s)	16, 225, 448
EciI	GGCGGA	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	113
Eco72I	CACGTG	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	365
Esp3I	CGTCTC	1 cut(s)	60
FaeI	CATG	4 cut(s)	379, 386, 455, 585
FaiI	YATR	8 cut(s)	155, 377, 384, 389, 443, 453, 583, 610
FaqI	GGGAC	1 cut(s)	537
FatI	CATG	4 cut(s)	375, 382, 451, 581
FauI	CCCGC	1 cut(s)	248
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	7 cut(s)	28, 31, 205, 265, 285, 356, 675
Fsp4HI	GCNGC	7 cut(s)	28, 31, 205, 265, 285, 356, 675
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	7 cut(s)	28, 31, 205, 265, 285, 356, 675
GsuI	CTGGAG	1 cut(s)	45
HaeII	RGCGCY	1 cut(s)	94
HaeIII	GGCC	3 cut(s)	239, 341, 370
HapII	CCGG	3 cut(s)	174, 197, 236
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	4 cut(s)	379, 386, 455, 585
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HinfI	GANTC	5 cut(s)	179, 257, 326, 379, 662
HpaII	CCGG	3 cut(s)	174, 197, 236
HphI	GGTGA	3 cut(s)	157, 174, 442
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	2 cut(s)	16, 102
Hpy188III	TCNNGA	4 cut(s)	174, 197, 376, 383
Hpy8I	GTNNAC	1 cut(s)	433
HpyAV	CCTTC	1 cut(s)	15
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4IV	ACGT	3 cut(s)	53, 252, 695
HpyCH4V	TGCA	4 cut(s)	30, 107, 455, 578
HpyF10VI	GCNNNNNNNGC	4 cut(s)	210, 245, 306, 352
HpyF3I	CTNAG	1 cut(s)	535
HpySE526I	ACGT	3 cut(s)	53, 252, 695
Hsp92II	CATG	4 cut(s)	379, 386, 455, 585
HspAI	GCGC	1 cut(s)	91
Kpn2I	TCCGGA	2 cut(s)	173, 196
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	3 cut(s)	16, 225, 448
LmnI	GCTCC	3 cut(s)	176, 248, 305
Lsp1109I	GCAGC	4 cut(s)	14, 42, 271, 661
MaeII	ACGT	3 cut(s)	53, 252, 695
MalI	GATC	3 cut(s)	18, 227, 450
MbiI	CCGCTC	1 cut(s)	243
MboI	GATC	3 cut(s)	16, 225, 448
MboII	GAAGA	2 cut(s)	305, 671
MfeI	CAATTG	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	6 cut(s)	6, 68, 291, 437, 525, 573
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	6 cut(s)	69, 214, 315, 357, 464, 660
MroI	TCCGGA	2 cut(s)	173, 196
MseI	TTAA	4 cut(s)	75, 489, 591, 641
MspI	CCGG	3 cut(s)	174, 197, 236
MspR9I	CCNGG	2 cut(s)	236, 367
MunI	CAATTG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	367
MwoI	GCNNNNNNNGC	4 cut(s)	210, 245, 306, 352
NciI	CCSGG	1 cut(s)	236
NdeII	GATC	3 cut(s)	16, 225, 448
NlaIII	CATG	4 cut(s)	379, 386, 455, 585
PagI	TCATGA	2 cut(s)	375, 382
PceI	AGGCCT	1 cut(s)	370
PfeI	GAWTC	4 cut(s)	257, 326, 379, 662
PflFI	GACNNNGTC	1 cut(s)	52
PkrI	GCNGC	7 cut(s)	29, 32, 206, 266, 286, 357, 676
PleI	GAGTC	1 cut(s)	173
PmaCI	CACGTG	1 cut(s)	253
PmlI	CACGTG	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	173
Ppu21I	YACGTR	2 cut(s)	253, 696
Psp6I	CCWGG	1 cut(s)	365
PspCI	CACGTG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	365
PspPI	GGNCC	2 cut(s)	113, 238
PstI	CTGCAG	1 cut(s)	32
PsyI	GACNNNGTC	1 cut(s)	52
RsaI	GTAC	3 cut(s)	333, 606, 694
RsaNI	GTAC	3 cut(s)	332, 605, 693
SaqAI	TTAA	4 cut(s)	75, 489, 591, 641
SatI	GCNGC	7 cut(s)	28, 31, 205, 265, 285, 356, 675
Sau3AI	GATC	3 cut(s)	16, 225, 448
Sau96I	GGNCC	2 cut(s)	113, 238
ScaI	AGTACT	1 cut(s)	333
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	2 cut(s)	236, 367
SduI	GDGCHC	1 cut(s)	477
SfcI	CTRYAG	1 cut(s)	28
SinI	GGWCC	1 cut(s)	113
Sse9I	AATT	6 cut(s)	6, 68, 291, 437, 525, 573
SseBI	AGGCCT	1 cut(s)	370
SsiI	CCGC	5 cut(s)	204, 241, 246, 265, 355
StuI	AGGCCT	1 cut(s)	370
StyD4I	CCNGG	2 cut(s)	234, 365
TaaI	ACNGT	1 cut(s)	83
TaiI	ACGT	3 cut(s)	56, 255, 698
TaqI	TCGA	3 cut(s)	19, 219, 570
TasI	AATT	6 cut(s)	6, 68, 291, 437, 525, 573
TatI	WGTACW	1 cut(s)	331
TauI	GCSGC	3 cut(s)	207, 267, 358
TfiI	GAWTC	4 cut(s)	257, 326, 379, 662
Tru1I	TTAA	4 cut(s)	75, 489, 591, 641
Tru9I	TTAA	4 cut(s)	75, 489, 591, 641
TscAI	CASTG	2 cut(s)	133, 214
TseI	GCWGC	4 cut(s)	27, 30, 284, 674
TspDTI	ATGAA	3 cut(s)	30, 205, 392
TspGWI	ACGGA	1 cut(s)	268
TspRI	CASTG	2 cut(s)	133, 214
Tth111I	GACNNNGTC	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	437
ZrmI	AGTACT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.