Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003062

Physical Location & Seq

Genomic Coordinates Reverse (-)

54427243 .. 54457963

Gene Structure 30721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00037350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGTCGTGTGTCTCGCTAGAGCGATATCTCAAGGATTGGGCCGATGACTCTCTACATGTCAAGCTCGCTCAACGACCTTGCTTCGGTGGTTTGGAGAAAAACATTCGTGGTAGAGGTCGGGATTACCTTGATAGTTCTGGAGTTAGCGGTGAGATTCCATCAACATTTGCTAATCTACAAAGCTTGCAAACACTGAGGTTTCAAGGAAACTCCTTTGAAGGTCCTATACCATCTGCACTTTCCAATCTGACTTCTCCGACAGAGCTGTATATAACTGACTTATCTACTACCAATGGGAGCTCTTCTCTTGGGTTTATTAAGGATATGAAGTCTCTATCTATCTTGTATGTCAATGTTCCTCAAGAAATCAATAGCCCGAGGTGCGGGGTGAACTATCACGCTCTTAAATTTCTTCCCGAGATAGAGCAGATGGCTGATTTATTGGCATCAAGGATGAGAAACCGCACTGGAAGTTCCAATCCTTATATTGGGAAAGGAAAGCAAATCACTTCTACACACAAAAAGACATTGATCAGGTCCGGGCCGAGTGGGCAAAGTATGTCCAGAACTACAAGGAAAAGGAGAAGTTGGAGCATAGGCTCTGAAATGCACAGTTGGAAAAGGAGGATGAGAGGCAGAGCTTTCAGCAACATTTTTTGGGGATTTGCAGCTATTTCCTTGTTTGTGAACTATCGTTTTGGTCAGGAATCTATGAGGTATGATCAACTTCATGATGGCGGCCAAGTGAAAACCTGGCTGGGAGCAGTTGCAGGAAGTAAGAAACTTTCTGAGCCAAATGATAAAGCTACAAATGACTATCGAGTTGATTGGTCCAAAGTCCAAACTGGATGGACAACTGACAATTTGCAAATTGCATCCATGAATAGAATGAGAGATTCGTTTGAGCATAGTTATATTGTTGATGTGAAATCAAATAGTATTAAAATGGGTCTCATTGCAAGTATGAAAAAAGAAAAATTTCGAGATCATATACTGCGAAATCGAAATTTTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016051 GO:0017144 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

338

Amino Acids

38.28

Weight (kDa)

9.98

Isoelectric Point (pI)

47.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003062)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07951
malus_domestica	MD12G1248200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0318681 RchiOBHm_Chr1g0319091 RchiOBHm_Chr2g0125271 RchiOBHm_Chr4g0426301 RchiOBHm_Chr7g0187311
rosa_laevigata	RLG00000006896 RLG00000028895
rosa_multiflora	Rmu_sc0001747.1_g000005 Rmu_sc0001877.1_g000012 Rmu_sc0001904.1_g000006 Rmu_sc0002983.1_g000016 Rmu_sc0006382.1_g000008 Rmu_sc0007285.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011350 Rroxscaffold_1G00037350 Rroxscaffold_1G00045990 Rroxscaffold_1G00049060 Rroxscaffold_1G00070310 Rroxscaffold_3G00222330 Rroxscaffold_4G00307450 Rroxscaffold_5G00385990 Rroxscaffold_6G00407860 Rroxscaffold_6G00428470
rosa_rugosa	Rorug01G0107800 Rorug03G0135100 Rorug03G0135200
rosa_samantha	Rh2AG155600 Rh2AG341400 Rh2BG161900 Rh2BG322800 Rh3BG144800 Rh3BG291400 Rh3BG291500 Rh4CG112300 Rh5DG415000
rosa_wichuraiana	Rw6G014080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	147, 384, 463, 738
AcoI	YGGCCR	1 cut(s)	739
AcsI	RAATTY	3 cut(s)	407, 977, 1006
AfiI	CCNNNNNNNGG	3 cut(s)	83, 383, 488
AflIII	ACRYGT	1 cut(s)	55
AgsI	TTSAA	2 cut(s)	203, 218
AjnI	CCWGG	1 cut(s)	752
AluBI	AGCT	7 cut(s)	64, 183, 265, 300, 641, 671, 806
AluI	AGCT	7 cut(s)	64, 183, 265, 300, 641, 671, 806
Alw21I	GWGCWC	1 cut(s)	302
Alw26I	GTCTC	3 cut(s)	16, 336, 956
Ama87I	CYCGRG	2 cut(s)	376, 416
AoxI	GGCC	3 cut(s)	39, 542, 739
ApeKI	GCWGC	1 cut(s)	668
ApoI	RAATTY	3 cut(s)	407, 977, 1006
Asp700I	GAANNNNTTC	1 cut(s)	978
AspS9I	GGNCC	5 cut(s)	39, 221, 537, 542, 831
AsuC2I	CCSGG	1 cut(s)	541
AsuHPI	GGTGA	2 cut(s)	161, 400
AvaI	CYCGRG	2 cut(s)	376, 416
AvaII	GGWCC	3 cut(s)	221, 537, 831
BanII	GRGCYC	1 cut(s)	302
BarI	GAAGNNNNNNTAC	2 cut(s)	210, 242
Bbv12I	GWGCWC	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	680
BccI	CCATC	5 cut(s)	166, 238, 424, 728, 843
BciT130I	CCWGG	1 cut(s)	754
BclI	TGATCA	2 cut(s)	531, 721
BcnI	CCSGG	1 cut(s)	541
BcoDI	GTCTC	3 cut(s)	16, 336, 956
BfaI	CTAG	1 cut(s)	17
BglI	GCCNNNNNGGC	1 cut(s)	550
BisI	GCNGC	2 cut(s)	669, 739
BlsI	GCNGC	2 cut(s)	670, 740
Bme1390I	CCNGG	2 cut(s)	541, 754
Bme18I	GGWCC	3 cut(s)	221, 537, 831
BmeT110I	CYCGRG	2 cut(s)	376, 416
BmgT120I	GGNCC	5 cut(s)	39, 221, 537, 542, 831
BmrFI	CCNGG	2 cut(s)	541, 754
BmsI	GCATC	2 cut(s)	455, 884
BplI	GAGNNNNNCTC	2 cut(s)	289, 321
BpmI	CTGGAG	1 cut(s)	159
BpuEI	CTTGAG	2 cut(s)	14, 345
BpuMI	CCSGG	1 cut(s)	541
BsaI	GGTCTC	1 cut(s)	956
BsaJI	CCNNGG	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 383, 488
Bse1I	ACTGG	2 cut(s)	472, 850
Bse3DI	GCAATG	1 cut(s)	954
BseBI	CCWGG	1 cut(s)	754
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	4 cut(s)	459, 633, 854, 875
BseLI	CCNNNNNNNGG	3 cut(s)	83, 383, 488
BseMI	GCAATG	1 cut(s)	954
BseMII	CTCAG	2 cut(s)	185, 780
BseNI	ACTGG	2 cut(s)	472, 850
BseXI	GCAGC	1 cut(s)	680
BseYI	CCCAGC	1 cut(s)	757
BsgI	GTGCAG	1 cut(s)	219
BshFI	GGCC	3 cut(s)	41, 544, 741
BsiHKAI	GWGCWC	1 cut(s)	302
BsiHKCI	CYCGRG	2 cut(s)	376, 416
BsiSI	CCGG	1 cut(s)	540
BslI	CCNNNNNNNGG	3 cut(s)	83, 383, 488
BsmAI	GTCTC	3 cut(s)	16, 336, 956
BsnI	GGCC	3 cut(s)	41, 544, 741
Bso31I	GGTCTC	1 cut(s)	956
BsoBI	CYCGRG	2 cut(s)	376, 416
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp143I	GATC	3 cut(s)	531, 721, 985
BspACI	CCGC	4 cut(s)	147, 384, 463, 738
BspANI	GGCC	3 cut(s)	41, 544, 741
BspCNI	CTCAG	2 cut(s)	186, 781
BspHI	TCATGA	1 cut(s)	730
BspQI	GCTCTTC	1 cut(s)	307
BspTNI	GGTCTC	1 cut(s)	956
BsrDI	GCAATG	1 cut(s)	954
BsrI	ACTGG	2 cut(s)	472, 850
BssECI	CCNNGG	1 cut(s)	377
BssMI	GATC	3 cut(s)	531, 721, 985
Bst2UI	CCWGG	1 cut(s)	754
Bst4CI	ACNGT	1 cut(s)	614
Bst6I	CTCTTC	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	66, 185
BstDEI	CTNAG	2 cut(s)	194, 789
BstF5I	GGATG	4 cut(s)	459, 633, 854, 875
BstKTI	GATC	3 cut(s)	534, 724, 988
BstMAI	GTCTC	3 cut(s)	16, 336, 956
BstMBI	GATC	3 cut(s)	531, 721, 985
BstMWI	GCNNNNNNNGC	2 cut(s)	381, 550
BstNI	CCWGG	1 cut(s)	754
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	2 cut(s)	539, 752
BstV1I	GCAGC	1 cut(s)	680
BsuRI	GGCC	3 cut(s)	41, 544, 741
BtsCI	GGATG	4 cut(s)	459, 633, 854, 875
BtsIMutI	CAGTG	2 cut(s)	191, 465
Cac8I	GCNNGC	2 cut(s)	66, 185
CciI	TCATGA	1 cut(s)	730
Cfr13I	GGNCC	5 cut(s)	39, 221, 537, 542, 831
CviAII	CATG	3 cut(s)	56, 731, 880
DdeI	CTNAG	2 cut(s)	194, 789
DpnI	GATC	3 cut(s)	533, 723, 987
DpnII	GATC	3 cut(s)	531, 721, 985
EaeI	YGGCCR	1 cut(s)	739
Eam1104I	CTCTTC	1 cut(s)	307
EarI	CTCTTC	1 cut(s)	307
Ecl136II	GAGCTC	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	302
Eco31I	GGTCTC	1 cut(s)	956
Eco32I	GATATC	1 cut(s)	26
Eco47I	GGWCC	3 cut(s)	221, 537, 831
Eco53kI	GAGCTC	1 cut(s)	300
Eco88I	CYCGRG	2 cut(s)	376, 416
EcoICRI	GAGCTC	1 cut(s)	300
EcoO109I	RGGNCCY	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	752
EcoRV	GATATC	1 cut(s)	26
EcoT38I	GRGCYC	1 cut(s)	302
FaeI	CATG	3 cut(s)	59, 734, 883
FatI	CATG	3 cut(s)	55, 730, 879
FauI	CCCGC	1 cut(s)	377
FbaI	TGATCA	2 cut(s)	531, 721
Fnu4HI	GCNGC	2 cut(s)	669, 739
FokI	GGATG	4 cut(s)	466, 640, 861, 862
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	2 cut(s)	669, 739
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	2 cut(s)	669, 739
GsaI	CCCAGC	1 cut(s)	761
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	3 cut(s)	41, 544, 741
HapII	CCGG	1 cut(s)	540
Hin1II	CATG	3 cut(s)	59, 734, 883
HindIII	AAGCTT	1 cut(s)	181
HinfI	GANTC	4 cut(s)	47, 154, 707, 896
HpaII	CCGG	1 cut(s)	540
HphI	GGTGA	2 cut(s)	161, 400
Hpy166II	GTNNAC	2 cut(s)	391, 688
Hpy188I	TCNGA	4 cut(s)	249, 258, 604, 790
Hpy188III	TCNNGA	8 cut(s)	119, 138, 362, 416, 564, 704, 731, 983
Hpy8I	GTNNAC	2 cut(s)	391, 688
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	1 cut(s)	614
HpyCH4V	TGCA	8 cut(s)	187, 236, 610, 668, 770, 868, 875, 959
HpyF10VI	GCNNNNNNNGC	2 cut(s)	381, 550
HpyF3I	CTNAG	2 cut(s)	194, 789
Hsp92II	CATG	3 cut(s)	59, 734, 883
Ksp22I	TGATCA	2 cut(s)	531, 721
Kzo9I	GATC	3 cut(s)	531, 721, 985
LguI	GCTCTTC	1 cut(s)	307
LmnI	GCTCC	3 cut(s)	297, 591, 761
Lsp1109I	GCAGC	1 cut(s)	680
LweI	GCATC	2 cut(s)	455, 884
MaeI	CTAG	1 cut(s)	17
MalI	GATC	3 cut(s)	533, 723, 987
MboI	GATC	3 cut(s)	531, 721, 985
MboII	GAAGA	2 cut(s)	294, 404
MhlI	GDGCHC	1 cut(s)	302
MluCI	AATT	5 cut(s)	407, 862, 870, 977, 1006
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	3 cut(s)	281, 569, 596
MnlI	CCTC	7 cut(s)	107, 189, 369, 372, 618, 626, 708
MroXI	GAANNNNTTC	1 cut(s)	978
MseI	TTAA	4 cut(s)	318, 405, 942, 1011
MspI	CCGG	1 cut(s)	540
MspR9I	CCNGG	2 cut(s)	541, 754
MvaI	CCWGG	1 cut(s)	754
MwoI	GCNNNNNNNGC	2 cut(s)	381, 550
NciI	CCSGG	1 cut(s)	541
NdeII	GATC	3 cut(s)	531, 721, 985
NlaIII	CATG	3 cut(s)	59, 734, 883
NmeAIII	GCCGAG	1 cut(s)	570
NspI	RCATGY	1 cut(s)	59
PagI	TCATGA	1 cut(s)	730
PciI	ACATGT	1 cut(s)	55
PciSI	GCTCTTC	1 cut(s)	307
PdmI	GAANNNNTTC	1 cut(s)	978
PfeI	GAWTC	3 cut(s)	154, 707, 896
PkrI	GCNGC	2 cut(s)	670, 740
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PpuMI	RGGWCCY	1 cut(s)	221
PscI	ACATGT	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	752
PspFI	CCCAGC	1 cut(s)	757
PspGI	CCWGG	1 cut(s)	752
PspPI	GGNCC	5 cut(s)	39, 221, 537, 542, 831
PspPPI	RGGWCCY	1 cut(s)	221
SacI	GAGCTC	1 cut(s)	302
SapI	GCTCTTC	1 cut(s)	307
SaqAI	TTAA	4 cut(s)	318, 405, 942, 1011
SatI	GCNGC	2 cut(s)	669, 739
Sau3AI	GATC	3 cut(s)	531, 721, 985
Sau96I	GGNCC	5 cut(s)	39, 221, 537, 542, 831
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	2 cut(s)	541, 754
SduI	GDGCHC	1 cut(s)	302
SfaNI	GCATC	2 cut(s)	455, 884
SinI	GGWCC	3 cut(s)	221, 537, 831
SmlI	CTYRAG	2 cut(s)	29, 360
SmoI	CTYRAG	2 cut(s)	29, 360
Sse9I	AATT	5 cut(s)	407, 862, 870, 977, 1006
SsiI	CCGC	4 cut(s)	147, 384, 463, 738
SspMI	CTAG	1 cut(s)	17
SstI	GAGCTC	1 cut(s)	302
StyD4I	CCNGG	2 cut(s)	539, 752
TaaI	ACNGT	1 cut(s)	614
TaqI	TCGA	3 cut(s)	820, 982, 1003
TasI	AATT	5 cut(s)	407, 862, 870, 977, 1006
TauI	GCSGC	1 cut(s)	741
TfiI	GAWTC	3 cut(s)	154, 707, 896
Tru1I	TTAA	4 cut(s)	318, 405, 942, 1011
Tru9I	TTAA	4 cut(s)	318, 405, 942, 1011
TscAI	CASTG	2 cut(s)	198, 472
TseI	GCWGC	1 cut(s)	668
TspDTI	ATGAA	4 cut(s)	341, 719, 896, 980
TspRI	CASTG	2 cut(s)	198, 472
VpaK11BI	GGWCC	3 cut(s)	221, 537, 831
XapI	RAATTY	3 cut(s)	407, 977, 1006
XceI	RCATGY	1 cut(s)	59
XmnI	GAANNNNTTC	1 cut(s)	978
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.