FvH4_7g05940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0008763
Physical Location & Seq
Forward (+)
6141272 .. 6141778
507 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g05940.t1

Sequence Viewer

Length: 507 bp
ATGGAGAGGCCAGAAGGGTATCCAGAAGTAGAAGCTACAGAAGCCGATCAGCCATCAAACTCCGGCGCATCAATTCTGGGCACCAAGATTAATGATATGTCACAACTAGAAAGCGGTCTGCTTCGAAGAAACTACAGCGACGTGGGTGGAAACTACTACAGATTCCGATCAAACGTTGGTAAGTCAGTTGATCCAAGGTTCCTGGCCTTGGTAGAGTTCTTCAGGGAGCTCTACTTCCGAAGGCTCGAGCTGTTCAAGAAAATATTTCCGGGGAGTCCTGATAAGTTTCTGGCCGAGATGCCAAAGAAATGGAATTTGGTTTTATCTCAAGTCAAATCGGATCAGAGCACCAGGGTTCGGACCATGCAAAGAAGCCTGAGCATTGGCTCACCGCGTGAATTCAAAAGAGACGGGTCGGAAATGAGGCTGGAGCGATTCAAGGTCAGAACTATCGATGTGGATGATGATGTTGAACAAGATAAAACCAAGTCTGGCGGCTCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

19.34

Weight (kDa)

9.3

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 80
AccII CGCG 1 cut(s) 394
AciI CCGC 3 cut(s) 114, 392, 495
AclI AACGTT 1 cut(s) 174
AclWI GGATC 2 cut(s) 185, 348
AcoI YGGCCR 1 cut(s) 291
AcsI RAATTY 2 cut(s) 313, 398
AcuI CTGAAG 1 cut(s) 205
AdeI CACNNNGTG 1 cut(s) 395
AfiI CCNNNNNNNGG 2 cut(s) 208, 357
AgsI TTSAA 4 cut(s) 256, 403, 439, 473
AjiI CACGTC 1 cut(s) 142
AjnI CCWGG 2 cut(s) 201, 350
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AluBI AGCT 3 cut(s) 35, 229, 250
AluI AGCT 3 cut(s) 35, 229, 250
Alw21I GWGCWC 2 cut(s) 231, 350
Alw26I GTCTC 1 cut(s) 402
AlwI GGATC 2 cut(s) 185, 348
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 3 cut(s) 8, 204, 291
ApoI RAATTY 2 cut(s) 313, 398
AseI ATTAAT 1 cut(s) 90
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 360
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 1 cut(s) 381
AsuII TTCGAA 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 245
AvaII GGWCC 1 cut(s) 360
BaeGI GKGCMC 1 cut(s) 83
BanI GGYRCC 1 cut(s) 80
BanII GRGCYC 1 cut(s) 231
Bbv12I GWGCWC 2 cut(s) 231, 350
BccI CCATC 1 cut(s) 61
BciT130I CCWGG 2 cut(s) 203, 352
BciVI GTATCC 1 cut(s) 30
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 402
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 3 cut(s) 36, 133, 157
BfuI GTATCC 1 cut(s) 30
BisI GCNGC 1 cut(s) 496
BlsI GCNGC 1 cut(s) 497
Bme1390I CCNGG 3 cut(s) 203, 270, 352
Bme18I GGWCC 1 cut(s) 360
BmeT110I CYCGRG 1 cut(s) 245
BmgBI CACGTC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 360
BmiI GGNNCC 3 cut(s) 82, 200, 499
BmrFI CCNGG 3 cut(s) 203, 270, 352
BmsI GCATC 2 cut(s) 77, 288
BpmI CTGGAG 1 cut(s) 449
Bpu10I CCTNAGC 1 cut(s) 377
Bpu14I TTCGAA 1 cut(s) 124
BpuEI CTTGAG 1 cut(s) 312
BpuMI CCSGG 1 cut(s) 270
Bsa29I ATCGAT 1 cut(s) 453
BsaBI GATNNNNATC 1 cut(s) 166
BsaJI CCNNGG 4 cut(s) 194, 207, 269, 351
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 357
Bse8I GATNNNNATC 1 cut(s) 166
BseBI CCWGG 2 cut(s) 203, 352
BseCI ATCGAT 1 cut(s) 453
BseDI CCNNGG 4 cut(s) 194, 207, 269, 351
BseGI GGATG 1 cut(s) 466
BseJI GATNNNNATC 1 cut(s) 166
BseLI CCNNNNNNNGG 2 cut(s) 208, 357
BseMII CTCAG 1 cut(s) 368
BseSI GKGCMC 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 394
BshFI GGCC 3 cut(s) 10, 206, 293
BshNI GGYRCC 1 cut(s) 80
BshVI ATCGAT 1 cut(s) 453
BsiHKAI GWGCWC 2 cut(s) 231, 350
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 2 cut(s) 63, 269
BslI CCNNNNNNNGG 2 cut(s) 208, 357
BsmAI GTCTC 1 cut(s) 402
BsmBI CGTCTC 1 cut(s) 402
BsnI GGCC 3 cut(s) 10, 206, 293
BsoBI CYCGRG 1 cut(s) 245
Bsp119I TTCGAA 1 cut(s) 124
Bsp1286I GDGCHC 3 cut(s) 83, 231, 350
Bsp143I GATC 4 cut(s) 46, 167, 190, 340
BspACI CCGC 3 cut(s) 114, 392, 495
BspANI GGCC 3 cut(s) 10, 206, 293
BspCNI CTCAG 1 cut(s) 369
BspDI ATCGAT 1 cut(s) 453
BspFNI CGCG 1 cut(s) 394
BspLI GGNNCC 3 cut(s) 82, 200, 499
BspPI GGATC 2 cut(s) 185, 348
BspT104I TTCGAA 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 80
BssECI CCNNGG 4 cut(s) 194, 207, 269, 351
BssMI GATC 4 cut(s) 46, 167, 190, 340
BssT1I CCWWGG 2 cut(s) 194, 207
Bst2UI CCWGG 2 cut(s) 203, 352
BstBI TTCGAA 1 cut(s) 124
BstDEI CTNAG 1 cut(s) 377
BstF5I GGATG 1 cut(s) 466
BstFNI CGCG 1 cut(s) 394
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 4 cut(s) 49, 170, 193, 343
BstMAI GTCTC 1 cut(s) 402
BstMBI GATC 4 cut(s) 46, 167, 190, 340
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 2 cut(s) 203, 352
BstSCI CCNGG 3 cut(s) 201, 268, 350
BstSFI CTRYAG 3 cut(s) 36, 133, 157
BstSLI GKGCMC 1 cut(s) 83
BstUI CGCG 1 cut(s) 394
BstXI CCANNNNNNTGG 1 cut(s) 309
Bsu15I ATCGAT 1 cut(s) 453
BsuI GTATCC 1 cut(s) 30
BsuRI GGCC 3 cut(s) 10, 206, 293
BsuTUI ATCGAT 1 cut(s) 453
BtrI CACGTC 1 cut(s) 142
BtsCI GGATG 1 cut(s) 466
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 360
ClaI ATCGAT 1 cut(s) 453
CviAII CATG 1 cut(s) 364
DdeI CTNAG 1 cut(s) 377
DpnI GATC 4 cut(s) 48, 169, 192, 342
DpnII GATC 4 cut(s) 46, 167, 190, 340
DraIII CACNNNGTG 1 cut(s) 395
EaeI YGGCCR 1 cut(s) 291
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 2 cut(s) 194, 207
Eco24I GRGCYC 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 360
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 205
Eco88I CYCGRG 1 cut(s) 245
EcoICRI GAGCTC 1 cut(s) 229
EcoRI GAATTC 1 cut(s) 398
EcoRII CCWGG 2 cut(s) 201, 350
EcoT14I CCWWGG 2 cut(s) 194, 207
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 2 cut(s) 194, 207
Esp3I CGTCTC 1 cut(s) 402
FaeI CATG 1 cut(s) 367
FaiI YATR 2 cut(s) 98, 365
FatI CATG 1 cut(s) 363
Fnu4HI GCNGC 1 cut(s) 496
FokI GGATG 1 cut(s) 473
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 496
FspBI CTAG 1 cut(s) 107
GlaI GCGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 496
GsuI CTGGAG 1 cut(s) 449
HaeIII GGCC 3 cut(s) 10, 206, 293
HapII CCGG 2 cut(s) 63, 269
HhaI GCGC 1 cut(s) 68
Hin1II CATG 1 cut(s) 367
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HinfI GANTC 3 cut(s) 162, 274, 435
HpaII CCGG 2 cut(s) 63, 269
HphI GGTGA 1 cut(s) 381
Hpy188I TCNGA 7 cut(s) 167, 239, 340, 345, 360, 418, 446
Hpy188III TCNNGA 3 cut(s) 23, 256, 278
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 8, 234
HpyCH4IV ACGT 2 cut(s) 141, 174
HpyCH4V TGCA 1 cut(s) 367
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 377
HpySE526I ACGT 2 cut(s) 141, 174
Hsp92II CATG 1 cut(s) 367
HspAI GCGC 1 cut(s) 66
Kzo9I GATC 4 cut(s) 46, 167, 190, 340
LmnI GCTCC 3 cut(s) 226, 430, 503
LweI GCATC 2 cut(s) 77, 288
MaeI CTAG 1 cut(s) 107
MaeII ACGT 2 cut(s) 141, 174
MaeIII GTNAC 1 cut(s) 99
MalI GATC 4 cut(s) 48, 169, 192, 342
MboI GATC 4 cut(s) 46, 167, 190, 340
MboII GAAGA 2 cut(s) 138, 211
MhlI GDGCHC 3 cut(s) 83, 231, 350
MluCI AATT 3 cut(s) 72, 313, 398
MlyI GAGTC 1 cut(s) 283
MmeI TCCRAC 1 cut(s) 396
MnlI CCTC 1 cut(s) 417
MseI TTAA 1 cut(s) 90
MspI CCGG 2 cut(s) 63, 269
MspR9I CCNGG 3 cut(s) 203, 270, 352
MvaI CCWGG 2 cut(s) 203, 352
MvnI CGCG 1 cut(s) 394
MwoI GCNNNNNNNGC 1 cut(s) 41
NciI CCSGG 1 cut(s) 270
NdeII GATC 4 cut(s) 46, 167, 190, 340
NlaIII CATG 1 cut(s) 367
NlaIV GGNNCC 3 cut(s) 82, 200, 499
NmeAIII GCCGAG 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 99
NspV TTCGAA 1 cut(s) 124
PaeR7I CTCGAG 1 cut(s) 245
PfeI GAWTC 2 cut(s) 162, 435
PkrI GCNGC 1 cut(s) 497
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
PshBI ATTAAT 1 cut(s) 90
Psp124BI GAGCTC 1 cut(s) 231
Psp1406I AACGTT 1 cut(s) 174
Psp6I CCWGG 2 cut(s) 201, 350
PspGI CCWGG 2 cut(s) 201, 350
PspN4I GGNNCC 3 cut(s) 82, 200, 499
PspPI GGNCC 1 cut(s) 360
PspXI VCTCGAGB 1 cut(s) 245
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 1 cut(s) 496
Sau3AI GATC 4 cut(s) 46, 167, 190, 340
Sau96I GGNCC 1 cut(s) 360
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 3 cut(s) 203, 270, 352
SduI GDGCHC 3 cut(s) 83, 231, 350
SetI ASST 7 cut(s) 37, 144, 177, 200, 231, 252, 444
SfaNI GCATC 2 cut(s) 77, 288
SfcI CTRYAG 3 cut(s) 36, 133, 157
Sfr274I CTCGAG 1 cut(s) 245
SfuI TTCGAA 1 cut(s) 124
SinI GGWCC 1 cut(s) 360
SlaI CTCGAG 1 cut(s) 245
SmlI CTYRAG 2 cut(s) 245, 327
SmoI CTYRAG 2 cut(s) 245, 327
Sse9I AATT 3 cut(s) 72, 313, 398
SsiI CCGC 3 cut(s) 114, 392, 495
SspI AATATT 1 cut(s) 264
SspMI CTAG 1 cut(s) 107
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 3 cut(s) 201, 268, 350
StyI CCWWGG 2 cut(s) 194, 207
TaiI ACGT 2 cut(s) 144, 177
TaqI TCGA 3 cut(s) 124, 246, 453
TasI AATT 3 cut(s) 72, 313, 398
TauI GCSGC 1 cut(s) 498
TfiI GAWTC 2 cut(s) 162, 435
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TseFI GTSAC 1 cut(s) 99
Tsp45I GTSAC 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 360
VspI ATTAAT 1 cut(s) 90
XapI RAATTY 2 cut(s) 313, 398
XhoI CTCGAG 1 cut(s) 245
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.