Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001009.1

Orthogroup ID

OG0008763

Physical Location & Seq

Genomic Coordinates Forward (+)

8925 .. 9443

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001009.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atggaaaggccagaggggtatccagtagtagatgctacagaaatcgatcagccatcaaactccggcgcatcatttctcggcatcaagaatgatatgacacaactagaaagcggtctacttcgaagaaactacagcgacgtgggtgaaagaaactactacagattccaatcaaaagttggtaagttagttgatccgaggttgctagcgttggtagagttcttcagggagctctatttccgaagactcgagctgttcaagaaaatatttccggggcgtcccgataagtttctggacgagatggcaaagaaattgaacttggttttatcacaagtgaaatcggctcagacgacaagggctcggaccatgcaaaggagtctgagcattagctcgccgcgtgaattcaaacgagacgagtcggaaatgaggctggagcgattcaaggtcagaactattgatgtggatgatggtgttgaacttggtgggcaggatgataaaaccaagtccgctggctcaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

19.85

Weight (kDa)

9.42

Isoelectric Point (pI)

31.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38790
fragaria_vesca	FvH4_7g05940
malus_domestica	MD07G1068400.v1.1
prunus_persica	Prupe.2G086100_v2.0.a1
pyrus_communis	pycom02g21230 pycom07g05240 pycom07g05260
rosa_chinensis	RchiOBHm_Chr1g0333141 RchiOBHm_Chr1g0333151
rosa_laevigata	RLG00000029622
rosa_multiflora	Rmu_sc0001009.1_g000002 Rmu_sc0001214.1_g000015 Rmu_sc0001214.1_g000027
rosa_roxburghii	Rroxscaffold_4G00317740
rosa_rugosa	Rorug01G0107800
rosa_samantha	Rh1AG130700 Rh1AG130800 Rh1BG099900 Rh1CG124500 Rh1DG136100 Rh1DG136200
rosa_wichuraiana	Rw0G011820 Rw0G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	115
AccII	CGCG	1 cut(s)	394
AciI	CCGC	3 cut(s)	111, 392, 504
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	1 cut(s)	398
AcuI	CTGAAG	1 cut(s)	205
AcyI	GRCGYC	1 cut(s)	274
AfiI	CCNNNNNNNGG	1 cut(s)	369
AgsI	TTSAA	5 cut(s)	256, 313, 403, 439, 473
AjiI	CACGTC	1 cut(s)	139
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
AluBI	AGCT	3 cut(s)	229, 250, 387
AluI	AGCT	3 cut(s)	229, 250, 387
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	402
AlwI	GGATC	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	360
AsuC2I	CCSGG	1 cut(s)	270
AsuHPI	GGTGA	1 cut(s)	155
AsuII	TTCGAA	1 cut(s)	121
AsuNHI	GCTAGC	1 cut(s)	202
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	360
BanII	GRGCYC	2 cut(s)	231, 358
BbsI	GAAGAC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	231
BccI	CCATC	3 cut(s)	61, 292, 458
BciVI	GTATCC	1 cut(s)	30
BcnI	CCSGG	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	402
BfaI	CTAG	2 cut(s)	104, 203
BfmI	CTRYAG	3 cut(s)	36, 130, 157
BfuI	GTATCC	1 cut(s)	30
BisI	GCNGC	1 cut(s)	392
BlsI	GCNGC	1 cut(s)	393
Bme1390I	CCNGG	1 cut(s)	270
Bme18I	GGWCC	1 cut(s)	360
BmeT110I	CYCGRG	1 cut(s)	245
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	360
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	3 cut(s)	22, 77, 90
BmtI	GCTAGC	1 cut(s)	206
BpiI	GAAGAC	1 cut(s)	247
BpmI	CTGGAG	1 cut(s)	449
Bpu14I	TTCGAA	1 cut(s)	121
BpuMI	CCSGG	1 cut(s)	270
Bsa29I	ATCGAT	1 cut(s)	45
BsaBI	GATNNNNATC	1 cut(s)	166
BsaHI	GRCGYC	1 cut(s)	274
BsaJI	CCNNGG	2 cut(s)	194, 269
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
Bse1I	ACTGG	1 cut(s)	23
Bse8I	GATNNNNATC	1 cut(s)	166
BseCI	ATCGAT	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	194, 269
BseGI	GGATG	2 cut(s)	466, 493
BseJI	GATNNNNATC	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseMII	CTCAG	2 cut(s)	356, 368
BseNI	ACTGG	1 cut(s)	23
Bsh1236I	CGCG	1 cut(s)	394
BshFI	GGCC	1 cut(s)	10
BshVI	ATCGAT	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	2 cut(s)	63, 269
BslFI	GGGAC	1 cut(s)	261
BslI	CCNNNNNNNGG	1 cut(s)	369
BsmAI	GTCTC	1 cut(s)	402
BsmBI	CGTCTC	1 cut(s)	402
BsmFI	GGGAC	1 cut(s)	261
BsnI	GGCC	1 cut(s)	10
BsoBI	CYCGRG	1 cut(s)	245
Bsp119I	TTCGAA	1 cut(s)	121
Bsp1286I	GDGCHC	2 cut(s)	231, 358
Bsp143I	GATC	2 cut(s)	46, 190
BspACI	CCGC	3 cut(s)	111, 392, 504
BspANI	GGCC	1 cut(s)	10
BspCNI	CTCAG	2 cut(s)	355, 369
BspDI	ATCGAT	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	394
BspOI	GCTAGC	1 cut(s)	206
BspPI	GGATC	1 cut(s)	185
BspT104I	TTCGAA	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	2 cut(s)	194, 269
BssMI	GATC	2 cut(s)	46, 190
BssNI	GRCGYC	1 cut(s)	274
BstACI	GRCGYC	1 cut(s)	274
BstBI	TTCGAA	1 cut(s)	121
BstC8I	GCNNGC	3 cut(s)	204, 389, 508
BstDEI	CTNAG	2 cut(s)	342, 377
BstF5I	GGATG	2 cut(s)	466, 493
BstFNI	CGCG	1 cut(s)	394
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	2 cut(s)	49, 193
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	2 cut(s)	46, 190
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	3 cut(s)	36, 130, 157
BstUI	CGCG	1 cut(s)	394
BstV2I	GAAGAC	1 cut(s)	247
Bsu15I	ATCGAT	1 cut(s)	45
BsuI	GTATCC	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	10
BsuTUI	ATCGAT	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	466, 493
Cac8I	GCNNGC	3 cut(s)	204, 389, 508
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	360
ClaI	ATCGAT	1 cut(s)	45
CseI	GACGC	1 cut(s)	263
CviAII	CATG	1 cut(s)	364
CviJI	RGCY	9 cut(s)	10, 52, 229, 250, 341, 356, 387, 427, 510
CviKI_1	RGCY	9 cut(s)	10, 52, 229, 250, 341, 356, 387, 427, 510
DdeI	CTNAG	2 cut(s)	342, 377
DpnI	GATC	2 cut(s)	48, 192
DpnII	GATC	2 cut(s)	46, 190
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	2 cut(s)	231, 358
Eco47I	GGWCC	1 cut(s)	360
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	205
Eco88I	CYCGRG	1 cut(s)	245
EcoICRI	GAGCTC	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	398
EcoT38I	GRGCYC	2 cut(s)	231, 358
Esp3I	CGTCTC	1 cut(s)	402
FaeI	CATG	1 cut(s)	367
FaiI	YATR	2 cut(s)	95, 365
FaqI	GGGAC	1 cut(s)	261
FatI	CATG	1 cut(s)	363
FblI	GTMKAC	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	392
FokI	GGATG	2 cut(s)	473, 500
FriOI	GRGCYC	2 cut(s)	231, 358
Fsp4HI	GCNGC	1 cut(s)	392
FspBI	CTAG	2 cut(s)	104, 203
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	392
GsuI	CTGGAG	1 cut(s)	449
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	2 cut(s)	63, 269
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	274
Hin1II	CATG	1 cut(s)	367
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	5 cut(s)	162, 243, 373, 413, 435
HpaII	CCGG	2 cut(s)	63, 269
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	7 cut(s)	195, 239, 345, 360, 378, 418, 446
Hpy188III	TCNNGA	4 cut(s)	85, 256, 278, 290
Hpy8I	GTNNAC	1 cut(s)	116
Hpy99I	CGWCG	1 cut(s)	140
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	1 cut(s)	367
HpyF3I	CTNAG	2 cut(s)	342, 377
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	1 cut(s)	274
Hsp92II	CATG	1 cut(s)	367
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	2 cut(s)	46, 190
LmnI	GCTCC	2 cut(s)	226, 430
LpnPI	CCDG	9 cut(s)	24, 36, 76, 208, 275, 282, 413, 470, 492
LweI	GCATC	3 cut(s)	22, 77, 90
MaeI	CTAG	2 cut(s)	104, 203
MaeII	ACGT	1 cut(s)	138
MalI	GATC	2 cut(s)	48, 192
MboI	GATC	2 cut(s)	46, 190
MboII	GAAGA	3 cut(s)	135, 211, 252
MhlI	GDGCHC	2 cut(s)	231, 358
MluCI	AATT	2 cut(s)	308, 398
MlyI	GAGTC	3 cut(s)	237, 382, 422
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	3 cut(s)	7, 189, 417
MspA1I	CMGCKG	1 cut(s)	506
MspI	CCGG	2 cut(s)	63, 269
MspR9I	CCNGG	1 cut(s)	270
MvnI	CGCG	1 cut(s)	394
NciI	CCSGG	1 cut(s)	270
NdeII	GATC	2 cut(s)	46, 190
NheI	GCTAGC	1 cut(s)	202
NlaIII	CATG	1 cut(s)	367
NmeAIII	GCCGAG	1 cut(s)	57
NspV	TTCGAA	1 cut(s)	121
PaeR7I	CTCGAG	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	1 cut(s)	344
PfeI	GAWTC	2 cut(s)	162, 435
PkrI	GCNGC	1 cut(s)	393
PleI	GAGTC	3 cut(s)	237, 381, 421
PpsI	GAGTC	3 cut(s)	237, 381, 421
Psp124BI	GAGCTC	1 cut(s)	231
PspPI	GGNCC	1 cut(s)	360
PspXI	VCTCGAGB	1 cut(s)	245
SacI	GAGCTC	1 cut(s)	231
SatI	GCNGC	1 cut(s)	392
Sau3AI	GATC	2 cut(s)	46, 190
Sau96I	GGNCC	1 cut(s)	360
SchI	GAGTC	3 cut(s)	237, 382, 422
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	2 cut(s)	231, 358
SetI	ASST	6 cut(s)	141, 200, 231, 252, 389, 444
SfaNI	GCATC	3 cut(s)	22, 77, 90
SfcI	CTRYAG	3 cut(s)	36, 130, 157
Sfr274I	CTCGAG	1 cut(s)	245
SfuI	TTCGAA	1 cut(s)	121
SinI	GGWCC	1 cut(s)	360
SlaI	CTCGAG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	308, 398
SsiI	CCGC	3 cut(s)	111, 392, 504
SspI	AATATT	1 cut(s)	264
SspMI	CTAG	2 cut(s)	104, 203
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	268
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	3 cut(s)	45, 121, 246
TasI	AATT	2 cut(s)	308, 398
TauI	GCSGC	1 cut(s)	394
TfiI	GAWTC	2 cut(s)	162, 435
VpaK11BI	GGWCC	1 cut(s)	360
XapI	RAATTY	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XhoI	CTCGAG	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	115
XspI	CTAG	2 cut(s)	104, 203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.