Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0008763

Physical Location & Seq

Genomic Coordinates Forward (+)

17459397 .. 17460634

Gene Structure 1238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG099900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGAAAGGCCAGAGGGGTATCCAGTAGTAGATGCTACAGAAATCGATCAGCCATCAAACTCCGGCGCATCCTTTCTCGGCACCAAGAATGATATGTCACAACTAGAAAGCGGTCTACTTCGAAGAAACTACAGCGACGTGGGTGAAAAAAACTACTACAGATTCCAATCAAAAGTTGGTAAGTTAGTTGATCCGAGGTTGCTAGCGTTGGTAGAGTTTTTCAGGGAGCTCTACTTCCGAAGACTAGAGCTGTTCAAGAAAATATTTCCGGGGCGTCCCGATAAGTTTCTGGACGAGATGCCAAAGAAATTGAACTTGGTTTTATCACAAGTGAAATCGGCTCAGACGACCAGGGATCGGACCATGCAAAGGAGTCTGAGCATTGGCTCGCCGCGTGAATTCAAACGAGACGAGTCGGAAATGAGGCTGGAGCGATTCAAGGTCAGAACTATTGATGTGGATGATGGTGTTGAACAAGGTGTGCAGGATGATAAAACCAAGTCCGGGGGCTCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

19.88

Weight (kDa)

9.24

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38790
fragaria_vesca	FvH4_7g05940
malus_domestica	MD07G1068400.v1.1
prunus_persica	Prupe.2G086100_v2.0.a1
pyrus_communis	pycom02g21230 pycom07g05240 pycom07g05260
rosa_chinensis	RchiOBHm_Chr1g0333141 RchiOBHm_Chr1g0333151
rosa_laevigata	RLG00000029622
rosa_multiflora	Rmu_sc0001009.1_g000002 Rmu_sc0001214.1_g000015 Rmu_sc0001214.1_g000027
rosa_roxburghii	Rroxscaffold_4G00317740
rosa_rugosa	Rorug01G0107800
rosa_samantha	Rh1AG130700 Rh1AG130800 Rh1BG099900 Rh1CG124500 Rh1DG136100 Rh1DG136200
rosa_wichuraiana	Rw0G011820 Rw0G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	80
AccI	GTMKAC	1 cut(s)	115
AccII	CGCG	1 cut(s)	394
AciI	CCGC	2 cut(s)	111, 392
AclWI	GGATC	2 cut(s)	185, 363
AcsI	RAATTY	1 cut(s)	398
AcyI	GRCGYC	1 cut(s)	274
AfiI	CCNNNNNNNGG	3 cut(s)	357, 369, 504
AgsI	TTSAA	5 cut(s)	256, 313, 403, 439, 473
AjiI	CACGTC	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	350
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
AluBI	AGCT	2 cut(s)	229, 250
AluI	AGCT	2 cut(s)	229, 250
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	402
AlwI	GGATC	2 cut(s)	185, 363
AoxI	GGCC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	360
AsuC2I	CCSGG	2 cut(s)	270, 505
AsuHPI	GGTGA	1 cut(s)	155
AsuII	TTCGAA	1 cut(s)	121
AsuNHI	GCTAGC	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	360
BanI	GGYRCC	1 cut(s)	80
BanII	GRGCYC	2 cut(s)	231, 512
BbsI	GAAGAC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	231
BccI	CCATC	2 cut(s)	61, 458
BciT130I	CCWGG	1 cut(s)	352
BciVI	GTATCC	1 cut(s)	30
BcnI	CCSGG	2 cut(s)	270, 505
BcoDI	GTCTC	1 cut(s)	402
BfaI	CTAG	3 cut(s)	104, 203, 245
BfmI	CTRYAG	3 cut(s)	36, 130, 157
BfuI	GTATCC	1 cut(s)	30
BisI	GCNGC	1 cut(s)	392
BlsI	GCNGC	1 cut(s)	393
Bme1390I	CCNGG	3 cut(s)	270, 352, 505
Bme18I	GGWCC	1 cut(s)	360
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	3 cut(s)	270, 352, 505
BmsI	GCATC	3 cut(s)	22, 77, 288
BmtI	GCTAGC	1 cut(s)	206
BpiI	GAAGAC	1 cut(s)	247
BpmI	CTGGAG	1 cut(s)	449
Bpu14I	TTCGAA	1 cut(s)	121
BpuMI	CCSGG	2 cut(s)	270, 505
Bsa29I	ATCGAT	1 cut(s)	45
BsaBI	GATNNNNATC	1 cut(s)	166
BsaHI	GRCGYC	1 cut(s)	274
BsaJI	CCNNGG	4 cut(s)	194, 269, 351, 504
Bsc4I	CCNNNNNNNGG	3 cut(s)	357, 369, 504
Bse1I	ACTGG	1 cut(s)	23
Bse8I	GATNNNNATC	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	352
BseCI	ATCGAT	1 cut(s)	45
BseDI	CCNNGG	4 cut(s)	194, 269, 351, 504
BseGI	GGATG	3 cut(s)	68, 466, 493
BseJI	GATNNNNATC	1 cut(s)	166
BseLI	CCNNNNNNNGG	3 cut(s)	357, 369, 504
BseMII	CTCAG	2 cut(s)	356, 368
BseNI	ACTGG	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	503
Bsh1236I	CGCG	1 cut(s)	394
BshFI	GGCC	1 cut(s)	10
BshNI	GGYRCC	1 cut(s)	80
BshVI	ATCGAT	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	3 cut(s)	63, 269, 504
BslFI	GGGAC	1 cut(s)	261
BslI	CCNNNNNNNGG	3 cut(s)	357, 369, 504
BsmAI	GTCTC	1 cut(s)	402
BsmBI	CGTCTC	1 cut(s)	402
BsmFI	GGGAC	1 cut(s)	261
BsnI	GGCC	1 cut(s)	10
Bsp119I	TTCGAA	1 cut(s)	121
Bsp1286I	GDGCHC	2 cut(s)	231, 512
Bsp143I	GATC	3 cut(s)	46, 190, 355
BspACI	CCGC	2 cut(s)	111, 392
BspANI	GGCC	1 cut(s)	10
BspCNI	CTCAG	2 cut(s)	355, 369
BspDI	ATCGAT	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	394
BspLI	GGNNCC	1 cut(s)	82
BspOI	GCTAGC	1 cut(s)	206
BspPI	GGATC	2 cut(s)	185, 363
BspT104I	TTCGAA	1 cut(s)	121
BspT107I	GGYRCC	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	4 cut(s)	194, 269, 351, 504
BssMI	GATC	3 cut(s)	46, 190, 355
BssNI	GRCGYC	1 cut(s)	274
Bst2UI	CCWGG	1 cut(s)	352
BstACI	GRCGYC	1 cut(s)	274
BstBI	TTCGAA	1 cut(s)	121
BstC8I	GCNNGC	2 cut(s)	204, 389
BstDEI	CTNAG	2 cut(s)	342, 377
BstF5I	GGATG	3 cut(s)	68, 466, 493
BstFNI	CGCG	1 cut(s)	394
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	3 cut(s)	49, 193, 358
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	3 cut(s)	46, 190, 355
BstNI	CCWGG	1 cut(s)	352
BstSCI	CCNGG	3 cut(s)	268, 350, 503
BstSFI	CTRYAG	3 cut(s)	36, 130, 157
BstUI	CGCG	1 cut(s)	394
BstV2I	GAAGAC	1 cut(s)	247
Bsu15I	ATCGAT	1 cut(s)	45
BsuI	GTATCC	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	10
BsuTUI	ATCGAT	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	3 cut(s)	68, 466, 493
Cac8I	GCNNGC	2 cut(s)	204, 389
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	360
ClaI	ATCGAT	1 cut(s)	45
CseI	GACGC	1 cut(s)	263
CviAII	CATG	1 cut(s)	364
CviJI	RGCY	8 cut(s)	10, 52, 229, 250, 341, 387, 427, 510
CviKI_1	RGCY	8 cut(s)	10, 52, 229, 250, 341, 387, 427, 510
DdeI	CTNAG	2 cut(s)	342, 377
DpnI	GATC	3 cut(s)	48, 192, 357
DpnII	GATC	3 cut(s)	46, 190, 355
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	2 cut(s)	231, 512
Eco47I	GGWCC	1 cut(s)	360
Eco53kI	GAGCTC	1 cut(s)	229
EcoICRI	GAGCTC	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	350
EcoT38I	GRGCYC	2 cut(s)	231, 512
Esp3I	CGTCTC	1 cut(s)	402
FaeI	CATG	1 cut(s)	367
FaiI	YATR	2 cut(s)	95, 365
FaqI	GGGAC	1 cut(s)	261
FatI	CATG	1 cut(s)	363
FblI	GTMKAC	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	392
FokI	GGATG	3 cut(s)	55, 473, 500
FriOI	GRGCYC	2 cut(s)	231, 512
Fsp4HI	GCNGC	1 cut(s)	392
FspBI	CTAG	3 cut(s)	104, 203, 245
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	392
GsuI	CTGGAG	1 cut(s)	449
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	3 cut(s)	63, 269, 504
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	274
Hin1II	CATG	1 cut(s)	367
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	4 cut(s)	162, 373, 413, 435
HpaII	CCGG	3 cut(s)	63, 269, 504
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	7 cut(s)	195, 239, 345, 360, 378, 418, 446
Hpy188III	TCNNGA	3 cut(s)	256, 278, 290
Hpy8I	GTNNAC	1 cut(s)	116
Hpy99I	CGWCG	1 cut(s)	140
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	2 cut(s)	367, 484
HpyF3I	CTNAG	2 cut(s)	342, 377
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	1 cut(s)	274
Hsp92II	CATG	1 cut(s)	367
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	46, 190, 355
LmnI	GCTCC	2 cut(s)	226, 430
LweI	GCATC	3 cut(s)	22, 77, 288
MaeI	CTAG	3 cut(s)	104, 203, 245
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	96
MalI	GATC	3 cut(s)	48, 192, 357
MboI	GATC	3 cut(s)	46, 190, 355
MboII	GAAGA	2 cut(s)	135, 252
MhlI	GDGCHC	2 cut(s)	231, 512
MluCI	AATT	2 cut(s)	308, 398
MlyI	GAGTC	2 cut(s)	382, 422
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	3 cut(s)	7, 189, 417
MspI	CCGG	3 cut(s)	63, 269, 504
MspR9I	CCNGG	3 cut(s)	270, 352, 505
MvaI	CCWGG	1 cut(s)	352
MvnI	CGCG	1 cut(s)	394
NciI	CCSGG	2 cut(s)	270, 505
NdeII	GATC	3 cut(s)	46, 190, 355
NheI	GCTAGC	1 cut(s)	202
NlaIII	CATG	1 cut(s)	367
NlaIV	GGNNCC	1 cut(s)	82
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	96
NspV	TTCGAA	1 cut(s)	121
PcsI	WCGNNNNNNNCGW	1 cut(s)	344
PfeI	GAWTC	2 cut(s)	162, 435
PkrI	GCNGC	1 cut(s)	393
PleI	GAGTC	2 cut(s)	381, 421
PpsI	GAGTC	2 cut(s)	381, 421
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	350
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	1 cut(s)	360
SacI	GAGCTC	1 cut(s)	231
SatI	GCNGC	1 cut(s)	392
Sau3AI	GATC	3 cut(s)	46, 190, 355
Sau96I	GGNCC	1 cut(s)	360
SchI	GAGTC	2 cut(s)	382, 422
ScrFI	CCNGG	3 cut(s)	270, 352, 505
SduI	GDGCHC	2 cut(s)	231, 512
SetI	ASST	6 cut(s)	141, 200, 231, 252, 444, 481
SfaNI	GCATC	3 cut(s)	22, 77, 288
SfcI	CTRYAG	3 cut(s)	36, 130, 157
SfuI	TTCGAA	1 cut(s)	121
SinI	GGWCC	1 cut(s)	360
Sse9I	AATT	2 cut(s)	308, 398
SsiI	CCGC	2 cut(s)	111, 392
SspI	AATATT	1 cut(s)	264
SspMI	CTAG	3 cut(s)	104, 203, 245
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	3 cut(s)	268, 350, 503
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	45, 121
TasI	AATT	2 cut(s)	308, 398
TauI	GCSGC	1 cut(s)	394
TfiI	GAWTC	2 cut(s)	162, 435
TseFI	GTSAC	1 cut(s)	96
Tsp45I	GTSAC	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	360
XapI	RAATTY	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	115
XspI	CTAG	3 cut(s)	104, 203, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.