Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008763

Physical Location & Seq

Genomic Coordinates Forward (+)

4530568 .. 4531131

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g05240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAAACACAACAGCTCAATCTCCCCTCTTTGTATCGAGCAATATCAATTTATCGGTTGTTCCATGGAGAAGCCAGAAGGATATCCACAAGTAGATGATATTGCCACATGTAACGAGCCATCAAGTGCAAGCACTTCGTTTTTCGGAACCAAGAACGACATGTCACTGCTCGAGAGCGGCCTACTCCGGAGAAATGTTGGTGACATAGGTGACACTTACTACAGATTTCAGTCAAAAATTGGCAAATCAGTTGATCCAAGGTTGCTAGCGCTGGTGGAATTCTTTAGAGAACTTTACTTTCGAAGAGTTGAACTATTCAATAGAATATTTCCGGGGGTTCAGGATAAATTAACTATTGTGCCTAAGAAATTGGGTGTGGCATTAGCTCAAATGAAATCGGATCAAACCAAAGCACATCGGACAATGCAACGGAGTCTAAGTATTGGTTCACCGCGTGATTTCAAAAGAAGAGAATCCGAAATGAGGCTTCAGCGATTCAAGGTCAGGACTATCGTTGTAGATGATGTCGTTGATCAAACTGCTAAACCCGGTGGTTCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

21.29

Weight (kDa)

9.51

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38790
fragaria_vesca	FvH4_7g05940
malus_domestica	MD07G1068400.v1.1
prunus_persica	Prupe.2G086100_v2.0.a1
pyrus_communis	pycom02g21230 pycom07g05240 pycom07g05260
rosa_chinensis	RchiOBHm_Chr1g0333141 RchiOBHm_Chr1g0333151
rosa_laevigata	RLG00000029622
rosa_multiflora	Rmu_sc0001009.1_g000002 Rmu_sc0001214.1_g000015 Rmu_sc0001214.1_g000027
rosa_roxburghii	Rroxscaffold_4G00317740
rosa_rugosa	Rorug01G0107800
rosa_samantha	Rh1AG130700 Rh1AG130800 Rh1BG099900 Rh1CG124500 Rh1DG136100 Rh1DG136200
rosa_wichuraiana	Rw0G011820 Rw0G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	177
AccII	CGCG	1 cut(s)	454
AccIII	TCCGGA	1 cut(s)	186
AciI	CCGC	2 cut(s)	177, 452
AclWI	GGATC	2 cut(s)	248, 408
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	473
AdeI	CACNNNGTG	1 cut(s)	455
AfeI	AGCGCT	1 cut(s)	270
AfiI	CCNNNNNNNGG	1 cut(s)	483
AflIII	ACRYGT	2 cut(s)	107, 159
AgsI	TTSAA	4 cut(s)	311, 319, 463, 499
AluBI	AGCT	2 cut(s)	15, 386
AluI	AGCT	2 cut(s)	15, 386
AlwI	GGATC	2 cut(s)	248, 408
Ama87I	CYCGRG	1 cut(s)	170
Aor13HI	TCCGGA	1 cut(s)	186
Aor51HI	AGCGCT	1 cut(s)	270
AoxI	GGCC	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	271
AsuC2I	CCSGG	2 cut(s)	333, 549
AsuHPI	GGTGA	3 cut(s)	212, 221, 441
AsuII	TTCGAA	1 cut(s)	301
AsuNHI	GCTAGC	1 cut(s)	265
AvaI	CYCGRG	1 cut(s)	170
BccI	CCATC	1 cut(s)	127
BcgI	CGANNNNNNTGC	2 cut(s)	117, 151
BclI	TGATCA	1 cut(s)	532
BcnI	CCSGG	2 cut(s)	333, 549
BfaI	CTAG	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	220
BfoI	RGCGCY	1 cut(s)	272
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	2 cut(s)	333, 549
BmeT110I	CYCGRG	1 cut(s)	170
BmiI	GGNNCC	2 cut(s)	148, 556
BmrFI	CCNGG	2 cut(s)	333, 549
BmtI	GCTAGC	1 cut(s)	269
Bpu14I	TTCGAA	1 cut(s)	301
BpuMI	CCSGG	2 cut(s)	333, 549
BsaJI	CCNNGG	3 cut(s)	63, 257, 332
BsaWI	WCCGGW	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bsc4I	CCNNNNNNNGG	1 cut(s)	483
BseAI	TCCGGA	1 cut(s)	186
BseDI	CCNNGG	3 cut(s)	63, 257, 332
BseLI	CCNNNNNNNGG	1 cut(s)	483
Bsh1236I	CGCG	1 cut(s)	454
BshFI	GGCC	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	3 cut(s)	187, 332, 549
BslI	CCNNNNNNNGG	1 cut(s)	483
BsnI	GGCC	1 cut(s)	180
BsoBI	CYCGRG	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	301
Bsp13I	TCCGGA	1 cut(s)	186
Bsp143I	GATC	3 cut(s)	253, 400, 532
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	2 cut(s)	177, 452
BspANI	GGCC	1 cut(s)	180
BspEI	TCCGGA	1 cut(s)	186
BspFNI	CGCG	1 cut(s)	454
BspLI	GGNNCC	2 cut(s)	148, 556
BspOI	GCTAGC	1 cut(s)	269
BspPI	GGATC	2 cut(s)	248, 408
BspT104I	TTCGAA	1 cut(s)	301
BsrBI	CCGCTC	1 cut(s)	177
BssECI	CCNNGG	3 cut(s)	63, 257, 332
BssMI	GATC	3 cut(s)	253, 400, 532
BssT1I	CCWWGG	2 cut(s)	63, 257
Bst6I	CTCTTC	2 cut(s)	298, 463
BstBI	TTCGAA	1 cut(s)	301
BstC8I	GCNNGC	2 cut(s)	130, 267
BstDEI	CTNAG	2 cut(s)	363, 437
BstDSI	CCRYGG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	454
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	3 cut(s)	256, 403, 535
BstMBI	GATC	3 cut(s)	253, 400, 532
BstNSI	RCATGY	2 cut(s)	111, 163
BstSCI	CCNGG	2 cut(s)	331, 547
BstSFI	CTRYAG	1 cut(s)	220
BstUI	CGCG	1 cut(s)	454
BsuRI	GGCC	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	63
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	1 cut(s)	164
Cac8I	GCNNGC	2 cut(s)	130, 267
CfoI	GCGC	1 cut(s)	271
CviAII	CATG	3 cut(s)	64, 108, 160
CviJI	RGCY	6 cut(s)	15, 73, 118, 180, 386, 487
CviKI_1	RGCY	6 cut(s)	15, 73, 118, 180, 386, 487
DdeI	CTNAG	2 cut(s)	363, 437
DpnI	GATC	3 cut(s)	255, 402, 534
DpnII	GATC	3 cut(s)	253, 400, 532
DraIII	CACNNNGTG	1 cut(s)	455
Eam1104I	CTCTTC	2 cut(s)	298, 463
EarI	CTCTTC	2 cut(s)	298, 463
Eco130I	CCWWGG	2 cut(s)	63, 257
Eco32I	GATATC	1 cut(s)	83
Eco47III	AGCGCT	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	473
Eco88I	CYCGRG	1 cut(s)	170
EcoRI	GAATTC	1 cut(s)	278
EcoRV	GATATC	1 cut(s)	83
EcoT14I	CCWWGG	2 cut(s)	63, 257
ErhI	CCWWGG	2 cut(s)	63, 257
FaeI	CATG	3 cut(s)	67, 111, 163
FaiI	YATR	4 cut(s)	65, 109, 161, 206
FatI	CATG	3 cut(s)	63, 107, 159
FbaI	TGATCA	1 cut(s)	532
Fnu4HI	GCNGC	1 cut(s)	178
Fsp4HI	GCNGC	1 cut(s)	178
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	1 cut(s)	178
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	3 cut(s)	187, 332, 549
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	3 cut(s)	67, 111, 163
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	3 cut(s)	433, 473, 495
HpaII	CCGG	3 cut(s)	187, 332, 549
HphI	GGTGA	3 cut(s)	212, 221, 441
Hpy166II	GTNNAC	1 cut(s)	449
Hpy188I	TCNGA	4 cut(s)	146, 400, 420, 478
Hpy188III	TCNNGA	4 cut(s)	172, 187, 341, 505
Hpy8I	GTNNAC	1 cut(s)	449
HpyAV	CCTTC	1 cut(s)	71
HpyCH4V	TGCA	2 cut(s)	128, 427
HpyF3I	CTNAG	2 cut(s)	363, 437
Hsp92II	CATG	3 cut(s)	67, 111, 163
HspAI	GCGC	1 cut(s)	269
Kpn2I	TCCGGA	1 cut(s)	186
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	3 cut(s)	253, 400, 532
LpnPI	CCDG	6 cut(s)	87, 200, 257, 326, 345, 490
MaeI	CTAG	1 cut(s)	266
MaeIII	GTNAC	4 cut(s)	110, 162, 200, 209
MalI	GATC	3 cut(s)	255, 402, 534
MbiI	CCGCTC	1 cut(s)	177
MboI	GATC	3 cut(s)	253, 400, 532
MboII	GAAGA	2 cut(s)	315, 480
MluCI	AATT	5 cut(s)	47, 237, 278, 347, 368
MlyI	GAGTC	1 cut(s)	442
MnlI	CCTC	2 cut(s)	36, 477
MroI	TCCGGA	1 cut(s)	186
MseI	TTAA	1 cut(s)	350
MspI	CCGG	3 cut(s)	187, 332, 549
MspR9I	CCNGG	2 cut(s)	333, 549
MvnI	CGCG	1 cut(s)	454
NciI	CCSGG	2 cut(s)	333, 549
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	3 cut(s)	253, 400, 532
NheI	GCTAGC	1 cut(s)	265
NlaIII	CATG	3 cut(s)	67, 111, 163
NlaIV	GGNNCC	2 cut(s)	148, 556
NmuCI	GTSAC	3 cut(s)	162, 200, 209
NspI	RCATGY	2 cut(s)	111, 163
NspV	TTCGAA	1 cut(s)	301
PaeR7I	CTCGAG	1 cut(s)	170
PciI	ACATGT	2 cut(s)	107, 159
PfeI	GAWTC	2 cut(s)	473, 495
PkrI	GCNGC	1 cut(s)	179
PleI	GAGTC	1 cut(s)	441
PpsI	GAGTC	1 cut(s)	441
PscI	ACATGT	2 cut(s)	107, 159
PspN4I	GGNNCC	2 cut(s)	148, 556
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	3 cut(s)	253, 400, 532
SchI	GAGTC	1 cut(s)	442
ScrFI	CCNGG	2 cut(s)	333, 549
SetI	ASST	5 cut(s)	17, 211, 263, 388, 504
SfcI	CTRYAG	1 cut(s)	220
Sfr274I	CTCGAG	1 cut(s)	170
SfuI	TTCGAA	1 cut(s)	301
SlaI	CTCGAG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	5 cut(s)	47, 237, 278, 347, 368
SsiI	CCGC	2 cut(s)	177, 452
SspI	AATATT	1 cut(s)	327
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	2 cut(s)	331, 547
StyI	CCWWGG	2 cut(s)	63, 257
TaqI	TCGA	3 cut(s)	36, 171, 301
TasI	AATT	5 cut(s)	47, 237, 278, 347, 368
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	2 cut(s)	473, 495
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TscAI	CASTG	1 cut(s)	171
TseFI	GTSAC	3 cut(s)	162, 200, 209
Tsp45I	GTSAC	3 cut(s)	162, 200, 209
TspDTI	ATGAA	2 cut(s)	17, 407
TspGWI	ACGGA	1 cut(s)	445
TspRI	CASTG	1 cut(s)	171
XapI	RAATTY	1 cut(s)	278
XceI	RCATGY	2 cut(s)	111, 163
XhoI	CTCGAG	1 cut(s)	170
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.