Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0008763

Physical Location & Seq

Genomic Coordinates Forward (+)

28580465 .. 28581254

Gene Structure 790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG136200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGAAAGGCCAGAAGGGTATCCAGTAGTAGATGCTACAGAAATCGATCAGCCATCAAACTCCGGCGCATCATTTCTCAGCACCAAGAATGATATGTCACAACTAGAAAGCGGTCTACTTCGAAGAAACTACAGCGAGGTGGGTGAAAAAATTTACTACAGATTCCAATCAAAAGTTGGTAAGTTAGTTGATCCGAGGTTGCTAGCGCTGGTAGAGTTCTTCAGGGAGCTCTATTTCCGAAGACTCGAGCTGTTCAAGAAAATATTTCCGGGGCGTCCCGATAAGTTTCTGGACGAGATGGCAAAGAAATTGAACCTGGTTTTATCACAAGTGAAATCGGCTCAGACGACCAGGGCTCGGACCATGCAAAGGAGTCTGAGCATTGGCTCGCCGCGTGAATTCAAACCAGACGAGTCGGAAATGAGGCTGGAGCGATTCAAGGTCAGAACTATTGATGTGGATGATGATGTTGAACAAGGTGTGCAGGATGATAAAACCAAGTCCGGGGGCTCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

19.85

Weight (kDa)

9.04

Isoelectric Point (pI)

33.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38790
fragaria_vesca	FvH4_7g05940
malus_domestica	MD07G1068400.v1.1
prunus_persica	Prupe.2G086100_v2.0.a1
pyrus_communis	pycom02g21230 pycom07g05240 pycom07g05260
rosa_chinensis	RchiOBHm_Chr1g0333141 RchiOBHm_Chr1g0333151
rosa_laevigata	RLG00000029622
rosa_multiflora	Rmu_sc0001009.1_g000002 Rmu_sc0001214.1_g000015 Rmu_sc0001214.1_g000027
rosa_roxburghii	Rroxscaffold_4G00317740
rosa_rugosa	Rorug01G0107800
rosa_samantha	Rh1AG130700 Rh1AG130800 Rh1BG099900 Rh1CG124500 Rh1DG136100 Rh1DG136200
rosa_wichuraiana	Rw0G011820 Rw0G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	115
AccII	CGCG	1 cut(s)	394
AciI	CCGC	2 cut(s)	111, 392
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	2 cut(s)	150, 398
AcuI	CTGAAG	1 cut(s)	205
AcyI	GRCGYC	1 cut(s)	274
AfeI	AGCGCT	1 cut(s)	207
AfiI	CCNNNNNNNGG	3 cut(s)	357, 369, 504
AgsI	TTSAA	5 cut(s)	256, 313, 403, 439, 473
AjnI	CCWGG	2 cut(s)	315, 350
AluBI	AGCT	2 cut(s)	229, 250
AluI	AGCT	2 cut(s)	229, 250
Alw21I	GWGCWC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	245
Aor51HI	AGCGCT	1 cut(s)	207
AoxI	GGCC	1 cut(s)	8
ApoI	RAATTY	2 cut(s)	150, 398
AspLEI	GCGC	2 cut(s)	68, 208
AspS9I	GGNCC	1 cut(s)	360
AsuC2I	CCSGG	2 cut(s)	270, 505
AsuHPI	GGTGA	1 cut(s)	155
AsuII	TTCGAA	1 cut(s)	121
AsuNHI	GCTAGC	1 cut(s)	202
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	360
BanII	GRGCYC	3 cut(s)	231, 358, 512
BbsI	GAAGAC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	231
BccI	CCATC	2 cut(s)	61, 292
BciT130I	CCWGG	2 cut(s)	317, 352
BciVI	GTATCC	1 cut(s)	30
BcnI	CCSGG	2 cut(s)	270, 505
BfaI	CTAG	2 cut(s)	104, 203
BfmI	CTRYAG	3 cut(s)	36, 130, 157
BfoI	RGCGCY	1 cut(s)	209
BfuI	GTATCC	1 cut(s)	30
BisI	GCNGC	1 cut(s)	392
BlsI	GCNGC	1 cut(s)	393
Bme1390I	CCNGG	4 cut(s)	270, 317, 352, 505
Bme18I	GGWCC	1 cut(s)	360
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	360
BmrFI	CCNGG	4 cut(s)	270, 317, 352, 505
BmsI	GCATC	2 cut(s)	22, 77
BmtI	GCTAGC	1 cut(s)	206
BpiI	GAAGAC	1 cut(s)	247
BpmI	CTGGAG	1 cut(s)	449
Bpu14I	TTCGAA	1 cut(s)	121
BpuMI	CCSGG	2 cut(s)	270, 505
Bsa29I	ATCGAT	1 cut(s)	45
BsaBI	GATNNNNATC	1 cut(s)	166
BsaHI	GRCGYC	1 cut(s)	274
BsaJI	CCNNGG	4 cut(s)	194, 269, 351, 504
Bsc4I	CCNNNNNNNGG	3 cut(s)	357, 369, 504
Bse1I	ACTGG	1 cut(s)	23
Bse8I	GATNNNNATC	1 cut(s)	166
BseBI	CCWGG	2 cut(s)	317, 352
BseCI	ATCGAT	1 cut(s)	45
BseDI	CCNNGG	4 cut(s)	194, 269, 351, 504
BseGI	GGATG	2 cut(s)	466, 493
BseJI	GATNNNNATC	1 cut(s)	166
BseLI	CCNNNNNNNGG	3 cut(s)	357, 369, 504
BseMII	CTCAG	3 cut(s)	91, 356, 368
BseNI	ACTGG	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	503
Bsh1236I	CGCG	1 cut(s)	394
BshFI	GGCC	1 cut(s)	10
BshVI	ATCGAT	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	3 cut(s)	63, 269, 504
BslFI	GGGAC	1 cut(s)	261
BslI	CCNNNNNNNGG	3 cut(s)	357, 369, 504
BsmFI	GGGAC	1 cut(s)	261
BsnI	GGCC	1 cut(s)	10
BsoBI	CYCGRG	1 cut(s)	245
Bsp119I	TTCGAA	1 cut(s)	121
Bsp1286I	GDGCHC	3 cut(s)	231, 358, 512
Bsp143I	GATC	2 cut(s)	46, 190
BspACI	CCGC	2 cut(s)	111, 392
BspANI	GGCC	1 cut(s)	10
BspCNI	CTCAG	3 cut(s)	90, 355, 369
BspDI	ATCGAT	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	394
BspOI	GCTAGC	1 cut(s)	206
BspPI	GGATC	1 cut(s)	185
BspT104I	TTCGAA	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	4 cut(s)	194, 269, 351, 504
BssMI	GATC	2 cut(s)	46, 190
BssNI	GRCGYC	1 cut(s)	274
Bst2UI	CCWGG	2 cut(s)	317, 352
BstACI	GRCGYC	1 cut(s)	274
BstBI	TTCGAA	1 cut(s)	121
BstC8I	GCNNGC	2 cut(s)	204, 389
BstDEI	CTNAG	3 cut(s)	77, 342, 377
BstF5I	GGATG	2 cut(s)	466, 493
BstFNI	CGCG	1 cut(s)	394
BstH2I	RGCGCY	1 cut(s)	209
BstHHI	GCGC	2 cut(s)	68, 208
BstKTI	GATC	2 cut(s)	49, 193
BstMBI	GATC	2 cut(s)	46, 190
BstNI	CCWGG	2 cut(s)	317, 352
BstSCI	CCNGG	4 cut(s)	268, 315, 350, 503
BstSFI	CTRYAG	3 cut(s)	36, 130, 157
BstUI	CGCG	1 cut(s)	394
BstV2I	GAAGAC	1 cut(s)	247
Bsu15I	ATCGAT	1 cut(s)	45
BsuI	GTATCC	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	10
BsuTUI	ATCGAT	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	466, 493
Cac8I	GCNNGC	2 cut(s)	204, 389
CfoI	GCGC	2 cut(s)	68, 208
Cfr13I	GGNCC	1 cut(s)	360
ClaI	ATCGAT	1 cut(s)	45
CseI	GACGC	1 cut(s)	263
CsiI	ACCWGGT	1 cut(s)	315
CviAII	CATG	1 cut(s)	364
CviJI	RGCY	9 cut(s)	10, 52, 229, 250, 341, 356, 387, 427, 510
CviKI_1	RGCY	9 cut(s)	10, 52, 229, 250, 341, 356, 387, 427, 510
DdeI	CTNAG	3 cut(s)	77, 342, 377
DpnI	GATC	2 cut(s)	48, 192
DpnII	GATC	2 cut(s)	46, 190
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	3 cut(s)	231, 358, 512
Eco47I	GGWCC	1 cut(s)	360
Eco47III	AGCGCT	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	205
Eco88I	CYCGRG	1 cut(s)	245
EcoICRI	GAGCTC	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	398
EcoRII	CCWGG	2 cut(s)	315, 350
EcoT38I	GRGCYC	3 cut(s)	231, 358, 512
FaeI	CATG	1 cut(s)	367
FaiI	YATR	2 cut(s)	95, 365
FaqI	GGGAC	1 cut(s)	261
FatI	CATG	1 cut(s)	363
FblI	GTMKAC	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	392
FokI	GGATG	2 cut(s)	473, 500
FriOI	GRGCYC	3 cut(s)	231, 358, 512
Fsp4HI	GCNGC	1 cut(s)	392
FspBI	CTAG	2 cut(s)	104, 203
GlaI	GCGC	2 cut(s)	67, 207
GluI	GCNGC	1 cut(s)	392
GsuI	CTGGAG	1 cut(s)	449
HaeII	RGCGCY	1 cut(s)	209
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	3 cut(s)	63, 269, 504
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	2 cut(s)	68, 208
Hin1I	GRCGYC	1 cut(s)	274
Hin1II	CATG	1 cut(s)	367
Hin6I	GCGC	2 cut(s)	66, 206
HinP1I	GCGC	2 cut(s)	66, 206
HinfI	GANTC	5 cut(s)	162, 243, 373, 413, 435
HpaII	CCGG	3 cut(s)	63, 269, 504
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	7 cut(s)	195, 239, 345, 360, 378, 418, 446
Hpy188III	TCNNGA	3 cut(s)	256, 278, 290
Hpy8I	GTNNAC	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	8
HpyCH4V	TGCA	2 cut(s)	367, 484
HpyF3I	CTNAG	3 cut(s)	77, 342, 377
Hsp92I	GRCGYC	1 cut(s)	274
Hsp92II	CATG	1 cut(s)	367
HspAI	GCGC	2 cut(s)	66, 206
Kzo9I	GATC	2 cut(s)	46, 190
LmnI	GCTCC	2 cut(s)	226, 430
LweI	GCATC	2 cut(s)	22, 77
MabI	ACCWGGT	1 cut(s)	315
MaeI	CTAG	2 cut(s)	104, 203
MaeIII	GTNAC	1 cut(s)	96
MalI	GATC	2 cut(s)	48, 192
MboI	GATC	2 cut(s)	46, 190
MboII	GAAGA	3 cut(s)	135, 211, 252
MhlI	GDGCHC	3 cut(s)	231, 358, 512
MluCI	AATT	3 cut(s)	150, 308, 398
MlyI	GAGTC	3 cut(s)	237, 382, 422
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	3 cut(s)	130, 189, 417
MspI	CCGG	3 cut(s)	63, 269, 504
MspR9I	CCNGG	4 cut(s)	270, 317, 352, 505
MvaI	CCWGG	2 cut(s)	317, 352
MvnI	CGCG	1 cut(s)	394
NciI	CCSGG	2 cut(s)	270, 505
NdeII	GATC	2 cut(s)	46, 190
NheI	GCTAGC	1 cut(s)	202
NlaIII	CATG	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	96
NspV	TTCGAA	1 cut(s)	121
PaeR7I	CTCGAG	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	1 cut(s)	344
PfeI	GAWTC	2 cut(s)	162, 435
PkrI	GCNGC	1 cut(s)	393
PleI	GAGTC	3 cut(s)	237, 381, 421
PpsI	GAGTC	3 cut(s)	237, 381, 421
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	315, 350
PspGI	CCWGG	2 cut(s)	315, 350
PspPI	GGNCC	1 cut(s)	360
PspXI	VCTCGAGB	1 cut(s)	245
SacI	GAGCTC	1 cut(s)	231
SatI	GCNGC	1 cut(s)	392
Sau3AI	GATC	2 cut(s)	46, 190
Sau96I	GGNCC	1 cut(s)	360
SchI	GAGTC	3 cut(s)	237, 382, 422
ScrFI	CCNGG	4 cut(s)	270, 317, 352, 505
SduI	GDGCHC	3 cut(s)	231, 358, 512
SetI	ASST	7 cut(s)	141, 200, 231, 252, 318, 444, 481
SexAI	ACCWGGT	1 cut(s)	315
SfaNI	GCATC	2 cut(s)	22, 77
SfcI	CTRYAG	3 cut(s)	36, 130, 157
Sfr274I	CTCGAG	1 cut(s)	245
SfuI	TTCGAA	1 cut(s)	121
SinI	GGWCC	1 cut(s)	360
SlaI	CTCGAG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	3 cut(s)	150, 308, 398
SsiI	CCGC	2 cut(s)	111, 392
SspI	AATATT	1 cut(s)	264
SspMI	CTAG	2 cut(s)	104, 203
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	4 cut(s)	268, 315, 350, 503
TaqI	TCGA	3 cut(s)	45, 121, 246
TasI	AATT	3 cut(s)	150, 308, 398
TauI	GCSGC	1 cut(s)	394
TfiI	GAWTC	2 cut(s)	162, 435
TseFI	GTSAC	1 cut(s)	96
Tsp45I	GTSAC	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	360
XapI	RAATTY	2 cut(s)	150, 398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XhoI	CTCGAG	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	115
XspI	CTAG	2 cut(s)	104, 203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.