RLG00000029622

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0008763
Physical Location & Seq
Reverse (-)
41397884 .. 41398575
692 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029622

Sequence Viewer

Length: 603 bp
ATGGAAAGGCCAGAGGGGTATCCAGTAATAGATGCTACAGAAATCGATCAGCCATCAAACTCCGGCGCATCATTTCTCGGCATCAAGAATGATATGACACAACTAGAAAGCGGTCTACTTCGAAGAAACTACAGCGACGTGGGTGAAAAAAACTACTACAGATTCCAATCAAAAGTTGGTAAGTTAGTTGATCCGAGGTTGCTAGCGTTGGTAGAGTTCTTCAGGGAGCTCTACTTCCGAAGACTCGAGCTGTTCAAGAAAATATTTCCGGGGCGTCCCGATAAGTTTCTGGACGAGATGGCGAAGAAATTGAACTTGGTTTTATCACAAGTGAAATCGGCTCAGACGACCAGGGCTCGGACCATGCAAAGGAGTCTGAGCATTGGCTCGCCACGTGAATTCAAACGAGACGAGTCGGAAATGAGGCTGGAGCGATTCAAGGTCAGAACTATTGATGTGGATGATGGTGTTGAAGTTGGTGGGCAGGATGATAAAACCAAGTCCGGTGGCTCAAAGGATATTCTTGGTAGGGAAAAGAGATCAAAGAAAAAGCCCAATGGGCTTTCCAGCAATAGCGCAGCCCAGTTCTGCTTCCATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.91

Weight (kDa)

9.54

Isoelectric Point (pI)

31.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 115
AciI CCGC 1 cut(s) 111
AclWI GGATC 1 cut(s) 185
AcsI RAATTY 1 cut(s) 398
AcuI CTGAAG 1 cut(s) 205
AcvI CACGTG 1 cut(s) 395
AcyI GRCGYC 1 cut(s) 274
AfiI CCNNNNNNNGG 2 cut(s) 357, 369
AgsI TTSAA 5 cut(s) 256, 313, 403, 439, 473
AjiI CACGTC 1 cut(s) 139
AjnI CCWGG 1 cut(s) 350
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AluBI AGCT 2 cut(s) 229, 250
AluI AGCT 2 cut(s) 229, 250
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 402
AlwI GGATC 1 cut(s) 185
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 578
ApoI RAATTY 1 cut(s) 398
AspLEI GCGC 2 cut(s) 68, 578
AspS9I GGNCC 1 cut(s) 360
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 1 cut(s) 155
AsuII TTCGAA 1 cut(s) 121
AsuNHI GCTAGC 1 cut(s) 202
AvaI CYCGRG 1 cut(s) 245
AvaII GGWCC 1 cut(s) 360
BanII GRGCYC 2 cut(s) 231, 358
BbrPI CACGTG 1 cut(s) 395
BbsI GAAGAC 1 cut(s) 247
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 1 cut(s) 590
BccI CCATC 3 cut(s) 61, 292, 458
BciT130I CCWGG 1 cut(s) 352
BciVI GTATCC 1 cut(s) 30
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 402
BfaI CTAG 2 cut(s) 104, 203
BfmI CTRYAG 3 cut(s) 36, 130, 157
BfuI GTATCC 1 cut(s) 30
BglI GCCNNNNNGGC 1 cut(s) 559
BisI GCNGC 1 cut(s) 579
BlsI GCNGC 1 cut(s) 580
Bme1390I CCNGG 2 cut(s) 270, 352
Bme18I GGWCC 1 cut(s) 360
BmeT110I CYCGRG 1 cut(s) 245
BmgBI CACGTC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 360
BmrFI CCNGG 2 cut(s) 270, 352
BmrI ACTGGG 1 cut(s) 577
BmsI GCATC 3 cut(s) 22, 77, 90
BmtI GCTAGC 1 cut(s) 206
BmuI ACTGGG 1 cut(s) 577
BpiI GAAGAC 1 cut(s) 247
BpmI CTGGAG 1 cut(s) 449
Bpu14I TTCGAA 1 cut(s) 121
BpuMI CCSGG 1 cut(s) 270
Bsa29I ATCGAT 1 cut(s) 45
BsaAI YACGTR 1 cut(s) 395
BsaBI GATNNNNATC 1 cut(s) 166
BsaHI GRCGYC 1 cut(s) 274
BsaJI CCNNGG 3 cut(s) 194, 269, 351
BsaWI WCCGGW 1 cut(s) 503
Bsc4I CCNNNNNNNGG 2 cut(s) 357, 369
Bse1I ACTGG 2 cut(s) 23, 583
Bse8I GATNNNNATC 1 cut(s) 166
BseBI CCWGG 1 cut(s) 352
BseCI ATCGAT 1 cut(s) 45
BseDI CCNNGG 3 cut(s) 194, 269, 351
BseGI GGATG 2 cut(s) 466, 493
BseJI GATNNNNATC 1 cut(s) 166
BseLI CCNNNNNNNGG 2 cut(s) 357, 369
BseMII CTCAG 2 cut(s) 356, 368
BseNI ACTGG 2 cut(s) 23, 583
BseXI GCAGC 1 cut(s) 590
BshFI GGCC 1 cut(s) 10
BshVI ATCGAT 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 3 cut(s) 63, 269, 504
BslFI GGGAC 1 cut(s) 261
BslI CCNNNNNNNGG 2 cut(s) 357, 369
BsmAI GTCTC 1 cut(s) 402
BsmBI CGTCTC 1 cut(s) 402
BsmFI GGGAC 1 cut(s) 261
BsnI GGCC 1 cut(s) 10
BsoBI CYCGRG 1 cut(s) 245
Bsp119I TTCGAA 1 cut(s) 121
Bsp1286I GDGCHC 2 cut(s) 231, 358
Bsp143I GATC 3 cut(s) 46, 190, 539
BspACI CCGC 1 cut(s) 111
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 2 cut(s) 355, 369
BspDI ATCGAT 1 cut(s) 45
BspOI GCTAGC 1 cut(s) 206
BspPI GGATC 1 cut(s) 185
BspT104I TTCGAA 1 cut(s) 121
BsrI ACTGG 2 cut(s) 23, 583
BssECI CCNNGG 3 cut(s) 194, 269, 351
BssMI GATC 3 cut(s) 46, 190, 539
BssNI GRCGYC 1 cut(s) 274
Bst2UI CCWGG 1 cut(s) 352
BstACI GRCGYC 1 cut(s) 274
BstBAI YACGTR 1 cut(s) 395
BstBI TTCGAA 1 cut(s) 121
BstC8I GCNNGC 2 cut(s) 204, 389
BstDEI CTNAG 2 cut(s) 342, 377
BstF5I GGATG 2 cut(s) 466, 493
BstHHI GCGC 2 cut(s) 68, 578
BstKTI GATC 3 cut(s) 49, 193, 542
BstMAI GTCTC 1 cut(s) 402
BstMBI GATC 3 cut(s) 46, 190, 539
BstMWI GCNNNNNNNGC 1 cut(s) 559
BstNI CCWGG 1 cut(s) 352
BstSCI CCNGG 2 cut(s) 268, 350
BstSFI CTRYAG 3 cut(s) 36, 130, 157
BstV1I GCAGC 1 cut(s) 590
BstV2I GAAGAC 1 cut(s) 247
Bsu15I ATCGAT 1 cut(s) 45
BsuI GTATCC 1 cut(s) 30
BsuRI GGCC 1 cut(s) 10
BsuTUI ATCGAT 1 cut(s) 45
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 2 cut(s) 466, 493
Cac8I GCNNGC 2 cut(s) 204, 389
CfoI GCGC 2 cut(s) 68, 578
Cfr13I GGNCC 1 cut(s) 360
ClaI ATCGAT 1 cut(s) 45
CseI GACGC 1 cut(s) 263
CspCI CAANNNNNGTGG 2 cut(s) 487, 522
CviAII CATG 2 cut(s) 364, 596
DdeI CTNAG 2 cut(s) 342, 377
DpnI GATC 3 cut(s) 48, 192, 541
DpnII GATC 3 cut(s) 46, 190, 539
Ecl136II GAGCTC 1 cut(s) 229
Eco24I GRGCYC 2 cut(s) 231, 358
Eco47I GGWCC 1 cut(s) 360
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 205
Eco72I CACGTG 1 cut(s) 395
Eco88I CYCGRG 1 cut(s) 245
EcoICRI GAGCTC 1 cut(s) 229
EcoRI GAATTC 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 350
EcoT38I GRGCYC 2 cut(s) 231, 358
Esp3I CGTCTC 1 cut(s) 402
FaeI CATG 2 cut(s) 367, 599
FaiI YATR 3 cut(s) 95, 365, 597
FaqI GGGAC 1 cut(s) 261
FatI CATG 2 cut(s) 363, 595
FblI GTMKAC 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 579
FokI GGATG 2 cut(s) 473, 500
FriOI GRGCYC 2 cut(s) 231, 358
Fsp4HI GCNGC 1 cut(s) 579
FspBI CTAG 2 cut(s) 104, 203
GlaI GCGC 2 cut(s) 67, 577
GluI GCNGC 1 cut(s) 579
GsuI CTGGAG 1 cut(s) 449
HaeIII GGCC 1 cut(s) 10
HapII CCGG 3 cut(s) 63, 269, 504
HgaI GACGC 1 cut(s) 263
HhaI GCGC 2 cut(s) 68, 578
Hin1I GRCGYC 1 cut(s) 274
Hin1II CATG 2 cut(s) 367, 599
Hin6I GCGC 2 cut(s) 66, 576
HinP1I GCGC 2 cut(s) 66, 576
HinfI GANTC 5 cut(s) 162, 243, 373, 413, 435
HpaII CCGG 3 cut(s) 63, 269, 504
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 116
Hpy188I TCNGA 7 cut(s) 195, 239, 345, 360, 378, 418, 446
Hpy188III TCNNGA 4 cut(s) 85, 256, 278, 290
Hpy8I GTNNAC 1 cut(s) 116
Hpy99I CGWCG 1 cut(s) 140
HpyCH4IV ACGT 2 cut(s) 138, 394
HpyCH4V TGCA 1 cut(s) 367
HpyF10VI GCNNNNNNNGC 1 cut(s) 559
HpyF3I CTNAG 2 cut(s) 342, 377
HpySE526I ACGT 2 cut(s) 138, 394
Hsp92I GRCGYC 1 cut(s) 274
Hsp92II CATG 2 cut(s) 367, 599
HspAI GCGC 2 cut(s) 66, 576
Kzo9I GATC 3 cut(s) 46, 190, 539
LmnI GCTCC 2 cut(s) 226, 430
Lsp1109I GCAGC 1 cut(s) 590
LweI GCATC 3 cut(s) 22, 77, 90
MaeI CTAG 2 cut(s) 104, 203
MaeII ACGT 2 cut(s) 138, 394
MalI GATC 3 cut(s) 48, 192, 541
MboI GATC 3 cut(s) 46, 190, 539
MboII GAAGA 4 cut(s) 135, 211, 252, 316
MhlI GDGCHC 2 cut(s) 231, 358
MluCI AATT 2 cut(s) 308, 398
MlyI GAGTC 3 cut(s) 237, 382, 422
MmeI TCCRAC 1 cut(s) 396
MnlI CCTC 3 cut(s) 7, 189, 417
MspI CCGG 3 cut(s) 63, 269, 504
MspR9I CCNGG 2 cut(s) 270, 352
MvaI CCWGG 1 cut(s) 352
MwoI GCNNNNNNNGC 1 cut(s) 559
NciI CCSGG 1 cut(s) 270
NdeII GATC 3 cut(s) 46, 190, 539
NheI GCTAGC 1 cut(s) 202
NlaIII CATG 2 cut(s) 367, 599
NmeAIII GCCGAG 1 cut(s) 57
NspV TTCGAA 1 cut(s) 121
PaeR7I CTCGAG 1 cut(s) 245
PcsI WCGNNNNNNNCGW 1 cut(s) 344
PfeI GAWTC 2 cut(s) 162, 435
PkrI GCNGC 1 cut(s) 580
PleI GAGTC 3 cut(s) 237, 381, 421
PmaCI CACGTG 1 cut(s) 395
PmlI CACGTG 1 cut(s) 395
PpsI GAGTC 3 cut(s) 237, 381, 421
Ppu21I YACGTR 1 cut(s) 395
Psp124BI GAGCTC 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 350
PspCI CACGTG 1 cut(s) 395
PspGI CCWGG 1 cut(s) 350
PspPI GGNCC 1 cut(s) 360
PspXI VCTCGAGB 1 cut(s) 245
SacI GAGCTC 1 cut(s) 231
SatI GCNGC 1 cut(s) 579
Sau3AI GATC 3 cut(s) 46, 190, 539
Sau96I GGNCC 1 cut(s) 360
SchI GAGTC 3 cut(s) 237, 382, 422
ScrFI CCNGG 2 cut(s) 270, 352
SduI GDGCHC 2 cut(s) 231, 358
SetI ASST 6 cut(s) 141, 200, 231, 252, 397, 444
SfaNI GCATC 3 cut(s) 22, 77, 90
SfcI CTRYAG 3 cut(s) 36, 130, 157
Sfr274I CTCGAG 1 cut(s) 245
SfuI TTCGAA 1 cut(s) 121
SinI GGWCC 1 cut(s) 360
SlaI CTCGAG 1 cut(s) 245
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 2 cut(s) 308, 398
SsiI CCGC 1 cut(s) 111
SspI AATATT 1 cut(s) 264
SspMI CTAG 2 cut(s) 104, 203
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 268, 350
TaiI ACGT 2 cut(s) 141, 397
TaqI TCGA 3 cut(s) 45, 121, 246
TasI AATT 2 cut(s) 308, 398
TfiI GAWTC 2 cut(s) 162, 435
TseI GCWGC 1 cut(s) 578
VpaK11BI GGWCC 1 cut(s) 360
XapI RAATTY 1 cut(s) 398
XcmI CCANNNNNNNNNTGG 1 cut(s) 173
XhoI CTCGAG 1 cut(s) 245
XmiI GTMKAC 1 cut(s) 115
XspI CTAG 2 cut(s) 104, 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.