Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012113

Physical Location & Seq

Genomic Coordinates Forward (+)

16295140 .. 16296495

Gene Structure 1356 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCAGCCGCCGCACCGCCACCGCCACCAACAGCAGCACCGGAACCAAACATGGTAGCACCACTAATTTCACCAATCGGCCACCCAATGTTCTCCCGGATCCGTCTGGCAACACCGTCCGATGTCCCATTCATCCACAAACTAATTCACCAAATGGCAGTCTTCGAACGTCTCACGCATCTCTTCTCCGCCACCGAATCAGGTCTCGCTTCAACACTCTTCACCTCTCGTCCTTTCCAATCATTCACAGTCTTCCTCTTAGAAGTCTCTCGTTCTCCATTTCCAGCAACCATCACTTCATCACCATCTCCCGATTTCACACCGTTTTTCAAAACACATAACCTTGATCTCCCGATTGATGATCCGGAGAGTTACAATTTCTCGCCGGATATGTTGAACGACGTCGTTGTAGCTGGGTTTGTTCTGTTTTTCCCGAATTACTCTAGCTTTTTGTCCAAGCCTGGTTTTTACATTGAGGATATATTTGTGAGAGAGCCTTATAGGAGGAAAGGGTTTGGTAGCATGTTGTTGACTGCTGTGGCCAAACAAGCGGTGAAGATGGGTTATGGAAGAGTGGAATGGGTTGTTCTTGATTGGAATGTTAATGCTATCAAGTTTTATGAGCAGATGGGTGCTCAGATTCTGCAGGAGTGGAGAGTTTGTAGACTTACTGGTGATGCTCTTGAAGCTTTTGATCAGGTCAACATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006591 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

236

Amino Acids

26.44

Weight (kDa)

5.71

Isoelectric Point (pI)

60.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	100 - 211	5.4e-19	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	137 - 211	3.4e-09	Acetyltransferase (GNAT) domain
FR47	PF08445	151 - 215	1.9e-06	FR47-like protein
Acetyltransf_10	PF13673	154 - 211	2.3e-06	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39020 AT2G39030
fragaria_vesca	FvH4_7g19050
malus_domestica	MD01G1105800.v1.1
prunus_persica	Prupe.2G211200_v2.0.a1 Prupe.2G211200_v2.0.a1 Prupe.2G211200_v2.0.a1
pyrus_communis	pycom01g13260
rosa_chinensis	RchiOBHm_Chr1g0362951
rosa_laevigata	RLG00000027608
rosa_multiflora	Rmu_sc0000174.1_g000011 Rmu_sc0012461.1_g000003
rosa_roxburghii	Rroxscaffold_4G00293610
rosa_rugosa	Rorug01G0302300
rosa_samantha	Rh1AG312000 Rh1BG275000 Rh1CG292300 Rh1DG305700
rosa_wichuraiana	Rw1G027640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	405
AccI	GTMKAC	1 cut(s)	664
AccIII	TCCGGA	1 cut(s)	364
AciI	CCGC	6 cut(s)	9, 12, 17, 23, 189, 551
AclWI	GGATC	3 cut(s)	94, 107, 356
AcoI	YGGCCR	2 cut(s)	79, 540
AcyI	GRCGYC	1 cut(s)	402
AgsI	TTSAA	4 cut(s)	213, 331, 397, 686
AjnI	CCWGG	1 cut(s)	460
AluBI	AGCT	3 cut(s)	413, 447, 689
AluI	AGCT	3 cut(s)	413, 447, 689
Alw21I	GWGCWC	1 cut(s)	637
Alw26I	GTCTC	3 cut(s)	176, 209, 271
AlwI	GGATC	3 cut(s)	94, 107, 356
AlwNI	CAGNNNCTG	1 cut(s)	643
Aor13HI	TCCGGA	1 cut(s)	364
AoxI	GGCC	2 cut(s)	79, 540
ApeKI	GCWGC	2 cut(s)	5, 35
AsuC2I	CCSGG	1 cut(s)	97
AsuHPI	GGTGA	6 cut(s)	63, 140, 214, 294, 565, 686
AsuII	TTCGAA	1 cut(s)	165
BalI	TGGCCA	1 cut(s)	542
BamHI	GGATCC	1 cut(s)	99
BbsI	GAAGAC	2 cut(s)	154, 244
Bbv12I	GWGCWC	1 cut(s)	637
BbvI	GCAGC	2 cut(s)	17, 47
BccI	CCATC	4 cut(s)	299, 313, 553, 622
BciT130I	CCWGG	1 cut(s)	462
BclI	TGATCA	1 cut(s)	694
BcnI	CCSGG	1 cut(s)	97
BcoDI	GTCTC	3 cut(s)	176, 209, 271
BfaI	CTAG	2 cut(s)	444, 709
BfmI	CTRYAG	1 cut(s)	644
BisI	GCNGC	4 cut(s)	6, 9, 12, 36
BlsI	GCNGC	4 cut(s)	7, 10, 13, 37
Bme1390I	CCNGG	2 cut(s)	97, 462
BmiI	GGNNCC	2 cut(s)	45, 101
BmrFI	CCNGG	2 cut(s)	97, 462
BmsI	GCATC	2 cut(s)	187, 667
BpiI	GAAGAC	2 cut(s)	154, 244
Bpu14I	TTCGAA	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	97
BsaHI	GRCGYC	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	209
BsaWI	WCCGGW	2 cut(s)	40, 364
BsaXI	ACNNNNNCTCC	2 cut(s)	646, 676
Bse1I	ACTGG	1 cut(s)	676
BseAI	TCCGGA	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	462
BseGI	GGATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	650
BseNI	ACTGG	1 cut(s)	676
BseXI	GCAGC	2 cut(s)	17, 47
BseYI	CCCAGC	1 cut(s)	413
BshFI	GGCC	2 cut(s)	81, 542
BsiHKAI	GWGCWC	1 cut(s)	637
BsiSI	CCGG	4 cut(s)	41, 97, 365, 386
BslFI	GGGAC	1 cut(s)	110
BsmAI	GTCTC	3 cut(s)	176, 209, 271
BsmBI	CGTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	110
BsnI	GGCC	2 cut(s)	81, 542
Bso31I	GGTCTC	1 cut(s)	209
Bsp119I	TTCGAA	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	637
Bsp13I	TCCGGA	1 cut(s)	364
Bsp143I	GATC	4 cut(s)	99, 346, 361, 694
BspACI	CCGC	6 cut(s)	9, 12, 17, 23, 189, 551
BspANI	GGCC	2 cut(s)	81, 542
BspCNI	CTCAG	1 cut(s)	649
BspEI	TCCGGA	1 cut(s)	364
BspLI	GGNNCC	2 cut(s)	45, 101
BspMAI	CTGCAG	1 cut(s)	648
BspPI	GGATC	3 cut(s)	94, 107, 356
BspT104I	TTCGAA	1 cut(s)	165
BspTNI	GGTCTC	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	676
BssMI	GATC	4 cut(s)	99, 346, 361, 694
BssNI	GRCGYC	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	3 cut(s)	117, 250, 324
Bst6I	CTCTTC	3 cut(s)	188, 224, 565
BstACI	GRCGYC	1 cut(s)	402
BstBI	TTCGAA	1 cut(s)	165
BstDEI	CTNAG	2 cut(s)	259, 636
BstF5I	GGATG	1 cut(s)	132
BstKTI	GATC	4 cut(s)	102, 349, 364, 697
BstMAI	GTCTC	3 cut(s)	176, 209, 271
BstMBI	GATC	4 cut(s)	99, 346, 361, 694
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 548, 686
BstNI	CCWGG	1 cut(s)	462
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	2 cut(s)	95, 460
BstSFI	CTRYAG	1 cut(s)	644
BstV1I	GCAGC	2 cut(s)	17, 47
BstV2I	GAAGAC	2 cut(s)	154, 244
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BsuRI	GGCC	2 cut(s)	81, 542
BtsCI	GGATG	1 cut(s)	132
CaiI	CAGNNNCTG	1 cut(s)	643
CviAII	CATG	2 cut(s)	52, 523
CviJI	RGCY	8 cut(s)	8, 81, 413, 447, 460, 496, 542, 689
CviKI_1	RGCY	8 cut(s)	8, 81, 413, 447, 460, 496, 542, 689
DdeI	CTNAG	2 cut(s)	259, 636
DpnI	GATC	4 cut(s)	101, 348, 363, 696
DpnII	GATC	4 cut(s)	99, 346, 361, 694
EaeI	YGGCCR	2 cut(s)	79, 540
Eam1104I	CTCTTC	3 cut(s)	188, 224, 565
EarI	CTCTTC	3 cut(s)	188, 224, 565
EciI	GGCGGA	1 cut(s)	178
Eco31I	GGTCTC	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	460
Esp3I	CGTCTC	1 cut(s)	176
FaeI	CATG	2 cut(s)	55, 526
FaiI	YATR	8 cut(s)	53, 339, 392, 482, 501, 524, 567, 621
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	2 cut(s)	51, 522
FbaI	TGATCA	1 cut(s)	694
FblI	GTMKAC	1 cut(s)	664
Fnu4HI	GCNGC	4 cut(s)	6, 9, 12, 36
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	4 cut(s)	6, 9, 12, 36
FspBI	CTAG	2 cut(s)	444, 709
GluI	GCNGC	4 cut(s)	6, 9, 12, 36
GsaI	CCCAGC	1 cut(s)	417
HaeIII	GGCC	2 cut(s)	81, 542
HapII	CCGG	4 cut(s)	41, 97, 365, 386
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	2 cut(s)	55, 526
HincII	GTYRAC	2 cut(s)	531, 703
HindII	GTYRAC	2 cut(s)	531, 703
HindIII	AAGCTT	1 cut(s)	687
HinfI	GANTC	2 cut(s)	197, 640
HpaII	CCGG	4 cut(s)	41, 97, 365, 386
HphI	GGTGA	6 cut(s)	63, 140, 214, 294, 565, 686
Hpy166II	GTNNAC	3 cut(s)	531, 665, 703
Hpy188I	TCNGA	2 cut(s)	121, 639
Hpy188III	TCNNGA	6 cut(s)	311, 352, 365, 433, 590, 683
Hpy8I	GTNNAC	3 cut(s)	531, 665, 703
Hpy99I	CGWCG	2 cut(s)	404, 407
HpyCH4III	ACNGT	3 cut(s)	117, 250, 324
HpyCH4IV	ACGT	2 cut(s)	169, 402
HpyCH4V	TGCA	1 cut(s)	646
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 548, 686
HpyF3I	CTNAG	2 cut(s)	259, 636
HpySE526I	ACGT	2 cut(s)	169, 402
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	2 cut(s)	55, 526
Kpn2I	TCCGGA	1 cut(s)	364
Ksp22I	TGATCA	1 cut(s)	694
Kzo9I	GATC	4 cut(s)	99, 346, 361, 694
Lsp1109I	GCAGC	2 cut(s)	17, 47
LweI	GCATC	2 cut(s)	187, 667
MaeI	CTAG	2 cut(s)	444, 709
MaeII	ACGT	2 cut(s)	169, 402
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	4 cut(s)	101, 348, 363, 696
MboI	GATC	4 cut(s)	99, 346, 361, 694
MboII	GAAGA	6 cut(s)	154, 175, 211, 244, 568, 582
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	1 cut(s)	637
MlsI	TGGCCA	1 cut(s)	542
MluCI	AATT	4 cut(s)	66, 144, 376, 436
MluNI	TGGCCA	1 cut(s)	542
MnlI	CCTC	4 cut(s)	235, 266, 469, 498
Mox20I	TGGCCA	1 cut(s)	542
MroI	TCCGGA	1 cut(s)	364
MscI	TGGCCA	1 cut(s)	542
MseI	TTAA	1 cut(s)	603
Msp20I	TGGCCA	1 cut(s)	542
MspI	CCGG	4 cut(s)	41, 97, 365, 386
MspR9I	CCNGG	2 cut(s)	97, 462
MvaI	CCWGG	1 cut(s)	462
MwoI	GCNNNNNNNGC	3 cut(s)	11, 548, 686
NciI	CCSGG	1 cut(s)	97
NdeII	GATC	4 cut(s)	99, 346, 361, 694
NlaIII	CATG	2 cut(s)	55, 526
NlaIV	GGNNCC	2 cut(s)	45, 101
NspI	RCATGY	1 cut(s)	526
NspV	TTCGAA	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	197, 640
PfoI	TCCNGGA	1 cut(s)	95
PkrI	GCNGC	4 cut(s)	7, 10, 13, 37
Psp6I	CCWGG	1 cut(s)	460
PspFI	CCCAGC	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	2 cut(s)	45, 101
PstI	CTGCAG	1 cut(s)	648
PstNI	CAGNNNCTG	1 cut(s)	643
PsuI	RGATCY	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	603
SatI	GCNGC	4 cut(s)	6, 9, 12, 36
Sau3AI	GATC	4 cut(s)	99, 346, 361, 694
ScrFI	CCNGG	2 cut(s)	97, 462
SduI	GDGCHC	1 cut(s)	637
SetI	ASST	9 cut(s)	172, 205, 227, 345, 405, 415, 449, 691, 702
SfaNI	GCATC	2 cut(s)	187, 667
SfcI	CTRYAG	1 cut(s)	644
SfuI	TTCGAA	1 cut(s)	165
Sse9I	AATT	4 cut(s)	66, 144, 376, 436
SsiI	CCGC	6 cut(s)	9, 12, 17, 23, 189, 551
SspMI	CTAG	2 cut(s)	444, 709
StyD4I	CCNGG	2 cut(s)	95, 460
TaaI	ACNGT	3 cut(s)	117, 250, 324
TaiI	ACGT	2 cut(s)	172, 405
TaqI	TCGA	1 cut(s)	165
TasI	AATT	4 cut(s)	66, 144, 376, 436
TauI	GCSGC	2 cut(s)	11, 14
TfiI	GAWTC	2 cut(s)	197, 640
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TseI	GCWGC	2 cut(s)	5, 35
TspDTI	ATGAA	2 cut(s)	121, 288
TspGWI	ACGGA	1 cut(s)	92
XceI	RCATGY	1 cut(s)	526
XmiI	GTMKAC	1 cut(s)	664
XspI	CTAG	2 cut(s)	444, 709
ZraI	GACGTC	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.