Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012113

Physical Location & Seq

Genomic Coordinates Forward (+)

41824598 .. 41828381

Gene Structure 3784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0302300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCTTCTCTTCCTTCCGTCTCTTTCCTCATTTTCTCATCCTCTCAAATTATTGAGCACTTGGTCAAGTGCCACTTTTCTCTCTCTCTCTGAAACCCTCTTCCTCCTTCTCTCAGATCCGCGACGATCTACGTCGATGGCGTCCAAGCGGATCTTGAAGGAGCTCAAGGATCTCCAGAAGGATCCTCCGACCTCATGCAGCGCCGGTCCGGTTGCTGAAGACATGTTTCATTGGCAAGCGACGATAATGGGCCCTCCTGACAGTCCTTATGCAGGGGGTGTCTTTCTAGTTACCATTCATTTCCCTCCTGATTATCCGTTTAAACCACCTAAGGTTGCATTTAGGACTAAGGTCTTTCATCCAAATATCAACAGCAATGGAAGTATCTGCCTTGACATTTTGAAAGAGCAGTGGAGCCCTGCTCTGACCATATCCAAGGTGTTACTATCCATTTGTTCCCTGTTGACGGACCCCAACCCGGATGATCCCCTGGTGCCAGAAATTGCTCACATGTACAAGACAGACCGGTCAAAGTACGAGACAACTGCTAGGAGCTGGACCCAGAAGTATGCTATGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006591 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

193

Amino Acids

21.56

Weight (kDa)

8.41

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	50 - 186	9.2e-55	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39020 AT2G39030
fragaria_vesca	FvH4_7g19050
malus_domestica	MD01G1105800.v1.1
prunus_persica	Prupe.2G211200_v2.0.a1 Prupe.2G211200_v2.0.a1 Prupe.2G211200_v2.0.a1
pyrus_communis	pycom01g13260
rosa_chinensis	RchiOBHm_Chr1g0362951
rosa_laevigata	RLG00000027608
rosa_multiflora	Rmu_sc0000174.1_g000011 Rmu_sc0012461.1_g000003
rosa_roxburghii	Rroxscaffold_4G00293610
rosa_rugosa	Rorug01G0302300
rosa_samantha	Rh1AG312000 Rh1BG275000 Rh1CG292300 Rh1DG305700
rosa_wichuraiana	Rw1G027640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	526
AccB1I	GGYRCC	1 cut(s)	493
AccII	CGCG	1 cut(s)	121
AciI	CCGC	2 cut(s)	119, 148
AclWI	GGATC	6 cut(s)	110, 158, 176, 177, 189, 479
AcuI	CTGAAG	1 cut(s)	237
AcyI	GRCGYC	1 cut(s)	140
AfaI	GTAC	2 cut(s)	515, 536
AfiI	CCNNNNNNNGG	3 cut(s)	272, 466, 478
AflIII	ACRYGT	2 cut(s)	222, 510
AgeI	ACCGGT	1 cut(s)	525
AgsI	TTSAA	2 cut(s)	157, 403
AjnI	CCWGG	1 cut(s)	489
AluBI	AGCT	2 cut(s)	163, 555
AluI	AGCT	2 cut(s)	163, 555
Alw21I	GWGCWC	2 cut(s)	59, 165
Alw26I	GTCTC	2 cut(s)	24, 533
AlwI	GGATC	6 cut(s)	110, 158, 176, 177, 189, 479
AoxI	GGCC	1 cut(s)	250
ApaI	GGGCCC	1 cut(s)	254
ApeKI	GCWGC	1 cut(s)	198
AsiGI	ACCGGT	1 cut(s)	525
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	5 cut(s)	206, 250, 251, 469, 558
AsuC2I	CCSGG	1 cut(s)	479
AvaII	GGWCC	3 cut(s)	206, 469, 558
AxyI	CCTNAGG	1 cut(s)	330
BaeGI	GKGCMC	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	181
BanI	GGYRCC	1 cut(s)	493
BanII	GRGCYC	3 cut(s)	165, 254, 419
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	2 cut(s)	59, 165
BbvI	GCAGC	1 cut(s)	210
BccI	CCATC	1 cut(s)	130
BcgI	CGANNNNNNTGC	2 cut(s)	527, 561
BciT130I	CCWGG	1 cut(s)	491
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	2 cut(s)	24, 533
BfaI	CTAG	2 cut(s)	287, 549
BfoI	RGCGCY	1 cut(s)	204
BisI	GCNGC	1 cut(s)	199
BlsI	GCNGC	1 cut(s)	200
Bme1390I	CCNGG	2 cut(s)	479, 491
Bme18I	GGWCC	3 cut(s)	206, 469, 558
BmgT120I	GGNCC	5 cut(s)	206, 250, 251, 469, 558
BmiI	GGNNCC	6 cut(s)	183, 252, 416, 471, 495, 560
BmrFI	CCNGG	2 cut(s)	479, 491
BoxI	GACNNNNGTC	1 cut(s)	350
BpiI	GAAGAC	1 cut(s)	225
BplI	GAGNNNNNCTC	2 cut(s)	406, 438
BpmI	CTGGAG	1 cut(s)	158
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	479
BsaHI	GRCGYC	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	435, 489
BsaWI	WCCGGW	2 cut(s)	208, 525
Bsc4I	CCNNNNNNNGG	3 cut(s)	272, 466, 478
Bse118I	RCCGGY	2 cut(s)	203, 525
Bse21I	CCTNAGG	1 cut(s)	330
Bse3DI	GCAATG	1 cut(s)	382
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	2 cut(s)	435, 489
BseGI	GGATG	3 cut(s)	37, 358, 487
BseLI	CCNNNNNNNGG	3 cut(s)	272, 466, 478
BseMI	GCAATG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	126
BseSI	GKGCMC	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	210
Bsh1236I	CGCG	1 cut(s)	121
BshFI	GGCC	1 cut(s)	252
BshNI	GGYRCC	1 cut(s)	493
BshTI	ACCGGT	1 cut(s)	525
BsiHKAI	GWGCWC	2 cut(s)	59, 165
BsiSI	CCGG	4 cut(s)	204, 209, 479, 526
BslI	CCNNNNNNNGG	3 cut(s)	272, 466, 478
BsmAI	GTCTC	2 cut(s)	24, 533
BsmBI	CGTCTC	1 cut(s)	24
BsnI	GGCC	1 cut(s)	252
Bsp120I	GGGCCC	1 cut(s)	250
Bsp1286I	GDGCHC	4 cut(s)	59, 165, 254, 419
Bsp1407I	TGTACA	1 cut(s)	513
Bsp143I	GATC	6 cut(s)	115, 125, 150, 169, 181, 484
BspACI	CCGC	2 cut(s)	119, 148
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	1 cut(s)	125
BspFNI	CGCG	1 cut(s)	121
BspLI	GGNNCC	6 cut(s)	183, 252, 416, 471, 495, 560
BspPI	GGATC	6 cut(s)	110, 158, 176, 177, 189, 479
BspT107I	GGYRCC	1 cut(s)	493
BsrDI	GCAATG	1 cut(s)	382
BsrFI	RCCGGY	2 cut(s)	203, 525
BsrGI	TGTACA	1 cut(s)	513
BssAI	RCCGGY	2 cut(s)	203, 525
BssECI	CCNNGG	2 cut(s)	435, 489
BssMI	GATC	6 cut(s)	115, 125, 150, 169, 181, 484
BssNI	GRCGYC	1 cut(s)	140
BssT1I	CCWWGG	1 cut(s)	435
Bst2UI	CCWGG	1 cut(s)	491
Bst4CI	ACNGT	1 cut(s)	263
Bst6I	CTCTTC	2 cut(s)	14, 104
BstACI	GRCGYC	1 cut(s)	140
BstAUI	TGTACA	1 cut(s)	513
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	3 cut(s)	112, 330, 348
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstF5I	GGATG	3 cut(s)	37, 358, 487
BstFNI	CGCG	1 cut(s)	121
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	6 cut(s)	118, 128, 153, 172, 184, 487
BstMAI	GTCTC	2 cut(s)	24, 533
BstMBI	GATC	6 cut(s)	115, 125, 150, 169, 181, 484
BstNI	CCWGG	1 cut(s)	491
BstNSI	RCATGY	2 cut(s)	226, 514
BstPAI	GACNNNNGTC	1 cut(s)	350
BstSCI	CCNGG	2 cut(s)	477, 489
BstSLI	GKGCMC	1 cut(s)	254
BstUI	CGCG	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	210
BstV2I	GAAGAC	1 cut(s)	225
BstX2I	RGATCY	4 cut(s)	115, 150, 169, 181
BstYI	RGATCY	4 cut(s)	115, 150, 169, 181
Bsu36I	CCTNAGG	1 cut(s)	330
BsuRI	GGCC	1 cut(s)	252
BtsCI	GGATG	3 cut(s)	37, 358, 487
BtsI	GCAGTG	1 cut(s)	416
BtsIMutI	CAGTG	1 cut(s)	416
Cac8I	GCNNGC	1 cut(s)	237
CfoI	GCGC	1 cut(s)	203
Cfr10I	RCCGGY	2 cut(s)	203, 525
Cfr13I	GGNCC	5 cut(s)	206, 250, 251, 469, 558
CpoI	CGGWCCG	1 cut(s)	206
CseI	GACGC	1 cut(s)	129
Csp6I	GTAC	2 cut(s)	514, 535
CspAI	ACCGGT	1 cut(s)	525
CspI	CGGWCCG	1 cut(s)	206
CviAII	CATG	3 cut(s)	195, 223, 511
CviJI	RGCY	4 cut(s)	163, 252, 417, 555
CviKI_1	RGCY	4 cut(s)	163, 252, 417, 555
CviQI	GTAC	2 cut(s)	514, 535
DdeI	CTNAG	3 cut(s)	112, 330, 348
DpnI	GATC	6 cut(s)	117, 127, 152, 171, 183, 486
DpnII	GATC	6 cut(s)	115, 125, 150, 169, 181, 484
DraI	TTTAAA	1 cut(s)	322
DrdI	GACNNNNNNGTC	1 cut(s)	526
DseDI	GACNNNNNNGTC	1 cut(s)	526
Eam1104I	CTCTTC	2 cut(s)	14, 104
EarI	CTCTTC	2 cut(s)	14, 104
Ecl136II	GAGCTC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	435
Eco24I	GRGCYC	3 cut(s)	165, 254, 419
Eco47I	GGWCC	3 cut(s)	206, 469, 558
Eco53kI	GAGCTC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	237
Eco81I	CCTNAGG	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	163
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	435
EcoT38I	GRGCYC	3 cut(s)	165, 254, 419
ErhI	CCWWGG	1 cut(s)	435
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	3 cut(s)	198, 226, 514
FaiI	YATR	7 cut(s)	196, 224, 270, 431, 512, 570, 575
FalI	AAGNNNNNCTT	4 cut(s)	58, 90, 137, 169
FatI	CATG	3 cut(s)	194, 222, 510
Fnu4HI	GCNGC	1 cut(s)	199
FokI	GGATG	3 cut(s)	24, 345, 494
FriOI	GRGCYC	3 cut(s)	165, 254, 419
Fsp4HI	GCNGC	1 cut(s)	199
FspBI	CTAG	2 cut(s)	287, 549
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	1 cut(s)	199
GsuI	CTGGAG	1 cut(s)	158
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	4 cut(s)	204, 209, 479, 526
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	3 cut(s)	198, 226, 514
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	465
HindII	GTYRAC	1 cut(s)	465
HpaII	CCGG	4 cut(s)	204, 209, 479, 526
Hpy166II	GTNNAC	1 cut(s)	465
Hpy188I	TCNGA	4 cut(s)	91, 115, 189, 426
Hpy188III	TCNNGA	4 cut(s)	154, 175, 257, 308
Hpy8I	GTNNAC	1 cut(s)	465
Hpy99I	CGWCG	3 cut(s)	126, 136, 244
HpyAV	CCTTC	4 cut(s)	23, 116, 151, 172
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	3 cut(s)	198, 272, 338
HpyF3I	CTNAG	3 cut(s)	112, 330, 348
HpySE526I	ACGT	1 cut(s)	131
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	3 cut(s)	198, 226, 514
HspAI	GCGC	1 cut(s)	201
Kzo9I	GATC	6 cut(s)	115, 125, 150, 169, 181, 484
LmnI	GCTCC	3 cut(s)	160, 414, 552
Lsp1109I	GCAGC	1 cut(s)	210
MaeI	CTAG	2 cut(s)	287, 549
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	2 cut(s)	289, 441
MalI	GATC	6 cut(s)	117, 127, 152, 171, 183, 486
MboI	GATC	6 cut(s)	115, 125, 150, 169, 181, 484
MboII	GAAGA	2 cut(s)	91, 230
MflI	RGATCY	4 cut(s)	115, 150, 169, 181
MhlI	GDGCHC	4 cut(s)	59, 165, 254, 419
MluCI	AATT	2 cut(s)	47, 501
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	8 cut(s)	37, 51, 107, 113, 195, 202, 264, 315
MseI	TTAA	1 cut(s)	321
MspI	CCGG	4 cut(s)	204, 209, 479, 526
MspR9I	CCNGG	2 cut(s)	479, 491
MssI	GTTTAAAC	1 cut(s)	322
MvaI	CCWGG	1 cut(s)	491
MvnI	CGCG	1 cut(s)	121
NciI	CCSGG	1 cut(s)	479
NdeII	GATC	6 cut(s)	115, 125, 150, 169, 181, 484
NlaIII	CATG	3 cut(s)	198, 226, 514
NlaIV	GGNNCC	6 cut(s)	183, 252, 416, 471, 495, 560
NspI	RCATGY	2 cut(s)	226, 514
PciI	ACATGT	2 cut(s)	222, 510
PcsI	WCGNNNNNNNCGW	1 cut(s)	137
PinAI	ACCGGT	1 cut(s)	525
PkrI	GCNGC	1 cut(s)	200
PmeI	GTTTAAAC	1 cut(s)	322
PscI	ACATGT	2 cut(s)	222, 510
PshAI	GACNNNNGTC	1 cut(s)	350
Psp124BI	GAGCTC	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	489
PspGI	CCWGG	1 cut(s)	489
PspN4I	GGNNCC	6 cut(s)	183, 252, 416, 471, 495, 560
PspOMI	GGGCCC	1 cut(s)	250
PspPI	GGNCC	5 cut(s)	206, 250, 251, 469, 558
PsuI	RGATCY	4 cut(s)	115, 150, 169, 181
RsaI	GTAC	2 cut(s)	515, 536
RsaNI	GTAC	2 cut(s)	514, 535
Rsr2I	CGGWCCG	1 cut(s)	206
RsrII	CGGWCCG	1 cut(s)	206
SacI	GAGCTC	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	1 cut(s)	199
Sau3AI	GATC	6 cut(s)	115, 125, 150, 169, 181, 484
Sau96I	GGNCC	5 cut(s)	206, 250, 251, 469, 558
ScrFI	CCNGG	2 cut(s)	479, 491
SduI	GDGCHC	4 cut(s)	59, 165, 254, 419
SetI	ASST	8 cut(s)	134, 165, 194, 331, 336, 354, 441, 557
SinI	GGWCC	3 cut(s)	206, 469, 558
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	2 cut(s)	47, 501
SsiI	CCGC	2 cut(s)	119, 148
SspMI	CTAG	2 cut(s)	287, 549
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	2 cut(s)	477, 489
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	1 cut(s)	134
TasI	AATT	2 cut(s)	47, 501
TatI	WGTACW	1 cut(s)	513
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	1 cut(s)	416
TseI	GCWGC	1 cut(s)	198
TspDTI	ATGAA	3 cut(s)	218, 287, 347
TspGWI	ACGGA	3 cut(s)	6, 306, 482
TspRI	CASTG	1 cut(s)	416
VpaK11BI	GGWCC	3 cut(s)	206, 469, 558
XagI	CCTNNNNNAGG	1 cut(s)	270
XceI	RCATGY	2 cut(s)	226, 514
XspI	CTAG	2 cut(s)	287, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.