Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0012113

Physical Location & Seq

Genomic Coordinates Reverse (-)

21911542 .. 21912243

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1105800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCCGCCGCCGCGCCGCCACCGCCACCTACCCCAGCCCCAGAGGGCTTCAATGACGTACCCCGAGGCTCCACCCCAATGGGCTACCCACTCTTCTCTCGGATCCGCCTAGCCCACCCCACCGACGTCCCCCACATCCACAAGCTCATCCAGCAGATGGCCGTCTTCGAGCGCCTCACCGACCTCTTCGTCGCCACCGAGTCTTCCCTCTCGTCCACCCTCTTCACCTCCCCTCCCTTCCAGTCATTCACCATCTTGGTCCTCGAAGTCTCTGAGACGCCTTTCGTCGAACACCTTCAGTGCAACAACTCGGCCTACCCACCCACCATCAAAACCCACAATCTGGACCTCCCGATCGACGACGCAGAACGCGATTTGTTCAGATCCAACGGCGGGGACGCTGTCGTTGCTGGGTTTGTGCTGTTTTTCCCAAATTACTCCACCTTTTTGGGGAAGCCAGGGTTTTACATAGAGGACCTGTTTGTGAGGGAGTGCTATAGGAGGAAGGGGCTGGGGAAGATGCTGCTTTCAGCGGTGGCGAAGCAGGCGGTGAAGATGGGGTACGGCAGAGTGGAGTGGGTGGTGCTGGACTGGAACGTCAATGCCATCAAGTTTTACGAGGAGATGGGGGCTAAGATTTTGCAGGAGTGGAGGATTTGCAGGCTCACTGGTGACGCTCTCAATGCTTATGTCAATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006591 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

234

Amino Acids

26.03

Weight (kDa)

5.96

Isoelectric Point (pI)

52.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	120 - 210	8.1e-17	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	135 - 210	3e-09	Acetyltransferase (GNAT) domain
Acetyltransf_10	PF13673	155 - 210	3.1e-07	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39020 AT2G39030
fragaria_vesca	FvH4_7g19050
malus_domestica	MD01G1105800.v1.1
prunus_persica	Prupe.2G211200_v2.0.a1 Prupe.2G211200_v2.0.a1 Prupe.2G211200_v2.0.a1
pyrus_communis	pycom01g13260
rosa_chinensis	RchiOBHm_Chr1g0362951
rosa_laevigata	RLG00000027608
rosa_multiflora	Rmu_sc0000174.1_g000011 Rmu_sc0012461.1_g000003
rosa_roxburghii	Rroxscaffold_4G00293610
rosa_rugosa	Rorug01G0302300
rosa_samantha	Rh1AG312000 Rh1BG275000 Rh1CG292300 Rh1DG305700
rosa_wichuraiana	Rw1G027640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	188, 596
AatII	GACGTC	1 cut(s)	129
AccB7I	CCANNNNNTGG	2 cut(s)	157, 343
AccII	CGCG	2 cut(s)	14, 372
AciI	CCGC	9 cut(s)	6, 9, 12, 17, 23, 106, 393, 533, 548
AclWI	GGATC	3 cut(s)	97, 110, 378
AcoI	YGGCCR	2 cut(s)	3, 159
AcuI	CTGAAG	1 cut(s)	281
AcyI	GRCGYC	2 cut(s)	126, 278
AfaI	GTAC	2 cut(s)	60, 563
AfiI	CCNNNNNNNGG	4 cut(s)	157, 343, 393, 450
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
Alw26I	GTCTC	2 cut(s)	269, 274
AlwI	GGATC	3 cut(s)	97, 110, 378
Ama87I	CYCGRG	1 cut(s)	63
AoxI	GGCC	3 cut(s)	3, 159, 312
ApeKI	GCWGC	1 cut(s)	523
Asp700I	GAANNNNTTC	1 cut(s)	294
AspLEI	GCGC	2 cut(s)	16, 174
AspS9I	GGNCC	3 cut(s)	259, 346, 475
AsuHPI	GGTGA	5 cut(s)	169, 217, 241, 562, 683
AvaI	CYCGRG	1 cut(s)	63
AvaII	GGWCC	3 cut(s)	259, 346, 475
BamHI	GGATCC	1 cut(s)	102
BarI	GAAGNNNNNNTAC	2 cut(s)	545, 577
BbsI	GAAGAC	2 cut(s)	157, 195
BbvI	GCAGC	1 cut(s)	510
BccI	CCATC	6 cut(s)	151, 260, 335, 550, 614, 619
BceAI	ACGGC	3 cut(s)	146, 406, 580
BciT130I	CCWGG	1 cut(s)	459
BcoDI	GTCTC	2 cut(s)	269, 274
BfaI	CTAG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	496
BfoI	RGCGCY	1 cut(s)	175
BisI	GCNGC	5 cut(s)	6, 9, 12, 17, 524
BlsI	GCNGC	5 cut(s)	7, 10, 13, 18, 525
Bme1390I	CCNGG	1 cut(s)	459
Bme18I	GGWCC	3 cut(s)	259, 346, 475
BmeT110I	CYCGRG	1 cut(s)	63
BmgT120I	GGNCC	3 cut(s)	259, 346, 475
BmiI	GGNNCC	2 cut(s)	70, 104
BmrFI	CCNGG	1 cut(s)	459
BmsI	GCATC	1 cut(s)	510
BpiI	GAAGAC	2 cut(s)	157, 195
BsaHI	GRCGYC	2 cut(s)	126, 278
BsaJI	CCNNGG	2 cut(s)	64, 458
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	4 cut(s)	157, 343, 393, 450
Bse1I	ACTGG	3 cut(s)	241, 596, 673
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	2 cut(s)	64, 458
BseGI	GGATG	2 cut(s)	135, 147
BseLI	CCNNNNNNNGG	4 cut(s)	157, 343, 393, 450
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	3 cut(s)	241, 596, 673
BseRI	GAGGAG	1 cut(s)	635
BseXI	GCAGC	1 cut(s)	510
BseYI	CCCAGC	3 cut(s)	34, 410, 511
Bsh1236I	CGCG	2 cut(s)	14, 372
Bsh1285I	CGRYCG	1 cut(s)	357
BshFI	GGCC	3 cut(s)	5, 161, 314
BsiEI	CGRYCG	1 cut(s)	357
BsiHKCI	CYCGRG	1 cut(s)	63
BslFI	GGGAC	2 cut(s)	113, 410
BslI	CCNNNNNNNGG	4 cut(s)	157, 343, 393, 450
BsmAI	GTCTC	2 cut(s)	269, 274
BsmBI	CGTCTC	1 cut(s)	269
BsmFI	GGGAC	2 cut(s)	113, 410
BsnI	GGCC	3 cut(s)	5, 161, 314
BsoBI	CYCGRG	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	102, 354, 383
BspACI	CCGC	9 cut(s)	6, 9, 12, 17, 23, 106, 393, 533, 548
BspANI	GGCC	3 cut(s)	5, 161, 314
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	2 cut(s)	14, 372
BspLI	GGNNCC	2 cut(s)	70, 104
BspPI	GGATC	3 cut(s)	97, 110, 378
BsrI	ACTGG	3 cut(s)	241, 596, 673
BssECI	CCNNGG	2 cut(s)	64, 458
BssMI	GATC	3 cut(s)	102, 354, 383
BssNI	GRCGYC	2 cut(s)	126, 278
Bst2UI	CCWGG	1 cut(s)	459
Bst6I	CTCTTC	3 cut(s)	98, 191, 227
BstACI	GRCGYC	2 cut(s)	126, 278
BstC8I	GCNNGC	2 cut(s)	546, 662
BstDEI	CTNAG	2 cut(s)	273, 633
BstF5I	GGATG	2 cut(s)	135, 147
BstFNI	CGCG	2 cut(s)	14, 372
BstH2I	RGCGCY	1 cut(s)	175
BstHHI	GCGC	2 cut(s)	16, 174
BstKTI	GATC	3 cut(s)	105, 357, 386
BstMAI	GTCTC	2 cut(s)	269, 274
BstMBI	GATC	3 cut(s)	102, 354, 383
BstMCI	CGRYCG	1 cut(s)	357
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 22, 151, 407, 545, 683
BstNI	CCWGG	1 cut(s)	459
BstSCI	CCNGG	1 cut(s)	457
BstSFI	CTRYAG	1 cut(s)	496
BstUI	CGCG	2 cut(s)	14, 372
BstV1I	GCAGC	1 cut(s)	510
BstV2I	GAAGAC	2 cut(s)	157, 195
BstX2I	RGATCY	2 cut(s)	102, 383
BstXI	CCANNNNNNTGG	2 cut(s)	79, 448
BstYI	RGATCY	2 cut(s)	102, 383
BsuRI	GGCC	3 cut(s)	5, 161, 314
BtsCI	GGATG	2 cut(s)	135, 147
BtsIMutI	CAGTG	2 cut(s)	305, 666
Cac8I	GCNNGC	2 cut(s)	546, 662
CfoI	GCGC	2 cut(s)	16, 174
Cfr13I	GGNCC	3 cut(s)	259, 346, 475
CseI	GACGC	4 cut(s)	286, 371, 407, 683
Csp6I	GTAC	2 cut(s)	59, 562
CviQI	GTAC	2 cut(s)	59, 562
DdeI	CTNAG	2 cut(s)	273, 633
DpnI	GATC	3 cut(s)	104, 356, 385
DpnII	GATC	3 cut(s)	102, 354, 383
DrdI	GACNNNNNNGTC	2 cut(s)	188, 596
DseDI	GACNNNNNNGTC	2 cut(s)	188, 596
EaeI	YGGCCR	2 cut(s)	3, 159
Eam1104I	CTCTTC	3 cut(s)	98, 191, 227
EarI	CTCTTC	3 cut(s)	98, 191, 227
EciI	GGCGGA	1 cut(s)	95
Eco47I	GGWCC	3 cut(s)	259, 346, 475
Eco57I	CTGAAG	1 cut(s)	281
Eco88I	CYCGRG	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	475
EcoRII	CCWGG	1 cut(s)	457
Esp3I	CGTCTC	1 cut(s)	269
FaiI	YATR	3 cut(s)	470, 498, 690
FaqI	GGGAC	2 cut(s)	113, 410
FauI	CCCGC	1 cut(s)	386
Fnu4HI	GCNGC	5 cut(s)	6, 9, 12, 17, 524
FokI	GGATG	2 cut(s)	122, 134
Fsp4HI	GCNGC	5 cut(s)	6, 9, 12, 17, 524
FspBI	CTAG	1 cut(s)	110
GlaI	GCGC	2 cut(s)	15, 173
GluI	GCNGC	5 cut(s)	6, 9, 12, 17, 524
GsaI	CCCAGC	3 cut(s)	38, 414, 515
HaeII	RGCGCY	1 cut(s)	175
HaeIII	GGCC	3 cut(s)	5, 161, 314
HgaI	GACGC	4 cut(s)	286, 371, 407, 683
HhaI	GCGC	2 cut(s)	16, 174
Hin1I	GRCGYC	2 cut(s)	126, 278
Hin6I	GCGC	2 cut(s)	14, 172
HinP1I	GCGC	2 cut(s)	14, 172
HinfI	GANTC	1 cut(s)	200
HphI	GGTGA	5 cut(s)	169, 217, 241, 562, 683
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	3 cut(s)	102, 274, 383
Hpy188III	TCNNGA	2 cut(s)	344, 352
Hpy8I	GTNNAC	1 cut(s)	216
Hpy99I	CGWCG	5 cut(s)	128, 194, 290, 362, 365
HpyAV	CCTTC	3 cut(s)	247, 305, 499
HpyCH4IV	ACGT	3 cut(s)	57, 126, 597
HpyCH4V	TGCA	3 cut(s)	303, 643, 660
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 22, 151, 407, 545, 683
HpyF3I	CTNAG	2 cut(s)	273, 633
HpySE526I	ACGT	3 cut(s)	57, 126, 597
Hsp92I	GRCGYC	2 cut(s)	126, 278
HspAI	GCGC	2 cut(s)	14, 172
Kzo9I	GATC	3 cut(s)	102, 354, 383
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	1 cut(s)	510
LweI	GCATC	1 cut(s)	510
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	3 cut(s)	57, 126, 597
MaeIII	GTNAC	1 cut(s)	671
MalI	GATC	3 cut(s)	104, 356, 385
MboI	GATC	3 cut(s)	102, 354, 383
MboII	GAAGA	7 cut(s)	85, 157, 178, 195, 214, 529, 565
MflI	RGATCY	2 cut(s)	102, 383
MluCI	AATT	1 cut(s)	433
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	411
MroXI	GAANNNNTTC	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	533
MspR9I	CCNGG	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	459
MvnI	CGCG	2 cut(s)	14, 372
MwoI	GCNNNNNNNGC	6 cut(s)	11, 22, 151, 407, 545, 683
NdeII	GATC	3 cut(s)	102, 354, 383
NlaIV	GGNNCC	2 cut(s)	70, 104
NmeAIII	GCCGAG	1 cut(s)	290
NmuCI	GTSAC	1 cut(s)	671
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 369
PdmI	GAANNNNTTC	1 cut(s)	294
PflFI	GACNNNGTC	1 cut(s)	401
PflMI	CCANNNNNTGG	2 cut(s)	157, 343
PkrI	GCNGC	5 cut(s)	7, 10, 13, 18, 525
Ple19I	CGATCG	1 cut(s)	357
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PpuMI	RGGWCCY	1 cut(s)	475
Psp5II	RGGWCCY	1 cut(s)	475
Psp6I	CCWGG	1 cut(s)	457
PspFI	CCCAGC	3 cut(s)	34, 410, 511
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	2 cut(s)	70, 104
PspPI	GGNCC	3 cut(s)	259, 346, 475
PspPPI	RGGWCCY	1 cut(s)	475
PsuI	RGATCY	2 cut(s)	102, 383
PsyI	GACNNNGTC	1 cut(s)	401
PvuI	CGATCG	1 cut(s)	357
RsaI	GTAC	2 cut(s)	60, 563
RsaNI	GTAC	2 cut(s)	59, 562
RseI	CAYNNNNRTG	1 cut(s)	77
SatI	GCNGC	5 cut(s)	6, 9, 12, 17, 524
Sau3AI	GATC	3 cut(s)	102, 354, 383
Sau96I	GGNCC	3 cut(s)	259, 346, 475
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	459
SfaNI	GCATC	1 cut(s)	510
SfcI	CTRYAG	1 cut(s)	496
SinI	GGWCC	3 cut(s)	259, 346, 475
SmiMI	CAYNNNNRTG	1 cut(s)	77
Sse9I	AATT	1 cut(s)	433
SsiI	CCGC	9 cut(s)	6, 9, 12, 17, 23, 106, 393, 533, 548
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	457
TaiI	ACGT	3 cut(s)	60, 129, 600
TaqI	TCGA	4 cut(s)	168, 264, 288, 357
TasI	AATT	1 cut(s)	433
TauI	GCSGC	4 cut(s)	8, 11, 14, 19
TscAI	CASTG	2 cut(s)	305, 673
TseFI	GTSAC	1 cut(s)	671
TseI	GCWGC	1 cut(s)	523
Tsp45I	GTSAC	1 cut(s)	671
TspRI	CASTG	2 cut(s)	305, 673
Tth111I	GACNNNGTC	1 cut(s)	401
Van91I	CCANNNNNTGG	2 cut(s)	157, 343
VpaK11BI	GGWCC	3 cut(s)	259, 346, 475
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	1 cut(s)	110
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.