Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0012113

Physical Location & Seq

Genomic Coordinates Forward (+)

13844097 .. 13844798

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00293610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCCGCCGCCGCACCTCCACCGCCCCCGGCCCCGGTCCCGGAGGCCCCCATCGACGTCCCCAGAGGCTCCACCCCAATGGGCTACCCTCTGTTCGCCCGTATCCGCCTGGCCCACCCCACCGACGTCCCCCACATCCACAAGCTCATCCACCAGATGTCCGTCTTCGAACGCCTCGCCGACCAATGCTCCGCCACCGAAGCCTCCCTCGCCGCCACTCTCTTCACCTCCCCTCCCTTCAAGTCCTTCACCGTCTTCGTTCTCGAAGTCTCCTCCGCCCCTTTCCCCAACGACGCCCACAGCTCCAACCAGTTCTACCACCCCACTATCAAAACCCTCAATCTCGACCTCCCGATCGACGACCCGGAGAGCCATATCTTCCGATCCAAAGGCGGTGACGCCACCGTCGCCGGCTTCGTGCTGTTTTTCCCAAACTATTCTACTTTTCTCGCCAAGCCCGGGTTCTATGTGGAGGACCTGTTTGTGAGGGAGTGCTACCGGAGGAAGGGGATGGGGAAAATGCTGCTTTCGGCGGTGGCGAAGCAGGCGGTGAAGATGGGGTTCGGGAGAGTGGAGTGGGTTGTGCTGGATTGGAATGTGAATGCGATTAAGTTTTATGAGGAAATGGGCGCTAAGATTATGCAGGAGTGGAGGATTTGCAGGCTCACTGGGGATGCTCTTCAGGCTTATCATGATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006591 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

233

Amino Acids

25.91

Weight (kDa)

6.7

Isoelectric Point (pI)

51.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	116 - 210	3.1e-16	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	135 - 210	2.3e-08	Acetyltransferase (GNAT) domain
Acetyltransf_10	PF13673	138 - 210	1.4e-06	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39020 AT2G39030
fragaria_vesca	FvH4_7g19050
malus_domestica	MD01G1105800.v1.1
prunus_persica	Prupe.2G211200_v2.0.a1 Prupe.2G211200_v2.0.a1 Prupe.2G211200_v2.0.a1
pyrus_communis	pycom01g13260
rosa_chinensis	RchiOBHm_Chr1g0362951
rosa_laevigata	RLG00000027608
rosa_multiflora	Rmu_sc0000174.1_g000011 Rmu_sc0012461.1_g000003
rosa_roxburghii	Rroxscaffold_4G00293610
rosa_rugosa	Rorug01G0302300
rosa_samantha	Rh1AG312000 Rh1BG275000 Rh1CG292300 Rh1DG305700
rosa_wichuraiana	Rw1G027640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	404
AatII	GACGTC	2 cut(s)	60, 129
AclWI	GGATC	1 cut(s)	378
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	665
AcyI	GRCGYC	4 cut(s)	57, 126, 294, 399
AfiI	CCNNNNNNNGG	4 cut(s)	34, 40, 459, 505
AgsI	TTSAA	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	108
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AluBI	AGCT	2 cut(s)	145, 303
AluI	AGCT	2 cut(s)	145, 303
Alw26I	GTCTC	1 cut(s)	274
AlwI	GGATC	1 cut(s)	378
Ama87I	CYCGRG	1 cut(s)	458
AoxI	GGCC	4 cut(s)	3, 30, 45, 111
ApeKI	GCWGC	1 cut(s)	523
AspLEI	GCGC	1 cut(s)	632
AspS9I	GGNCC	5 cut(s)	31, 37, 46, 112, 475
AsuC2I	CCSGG	6 cut(s)	29, 35, 41, 365, 459, 460
AsuHPI	GGTGA	4 cut(s)	217, 241, 407, 562
AsuII	TTCGAA	1 cut(s)	168
AvaI	CYCGRG	1 cut(s)	458
AvaII	GGWCC	2 cut(s)	37, 475
BbsI	GAAGAC	2 cut(s)	157, 247
BbvI	GCAGC	1 cut(s)	510
BccI	CCATC	3 cut(s)	59, 505, 550
BciT130I	CCWGG	1 cut(s)	110
BciVI	GTATCC	1 cut(s)	113
BcnI	CCSGG	6 cut(s)	29, 35, 41, 365, 459, 460
BcoDI	GTCTC	1 cut(s)	274
BfoI	RGCGCY	1 cut(s)	633
BfuI	GTATCC	1 cut(s)	113
BisI	GCNGC	5 cut(s)	6, 9, 12, 213, 524
BlsI	GCNGC	5 cut(s)	7, 10, 13, 214, 525
Bme1390I	CCNGG	7 cut(s)	29, 35, 41, 110, 365, 459, 460
Bme18I	GGWCC	2 cut(s)	37, 475
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	5 cut(s)	31, 37, 46, 112, 475
BmiI	GGNNCC	4 cut(s)	33, 39, 48, 70
BmrFI	CCNGG	7 cut(s)	29, 35, 41, 110, 365, 459, 460
BmrI	ACTGGG	1 cut(s)	678
BmsI	GCATC	2 cut(s)	664, 685
BmuI	ACTGGG	1 cut(s)	678
BpiI	GAAGAC	2 cut(s)	157, 247
Bpu14I	TTCGAA	1 cut(s)	168
BpuMI	CCSGG	6 cut(s)	29, 35, 41, 365, 459, 460
BsaHI	GRCGYC	4 cut(s)	57, 126, 294, 399
BsaJI	CCNNGG	3 cut(s)	27, 33, 458
BsaWI	WCCGGW	1 cut(s)	498
BsaXI	ACNNNNNCTCC	6 cut(s)	173, 203, 217, 247, 464, 494
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 40, 459, 505
Bse118I	RCCGGY	1 cut(s)	410
Bse1I	ACTGG	2 cut(s)	310, 673
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	3 cut(s)	27, 33, 458
BseGI	GGATG	4 cut(s)	135, 147, 516, 679
BseLI	CCNNNNNNNGG	4 cut(s)	34, 40, 459, 505
BseNI	ACTGG	2 cut(s)	310, 673
BseRI	GAGGAG	1 cut(s)	262
BseXI	GCAGC	1 cut(s)	510
Bsh1285I	CGRYCG	1 cut(s)	357
BshFI	GGCC	4 cut(s)	5, 32, 47, 113
BsiEI	CGRYCG	1 cut(s)	357
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	7 cut(s)	29, 35, 41, 365, 411, 459, 499
BslFI	GGGAC	3 cut(s)	23, 44, 113
BslI	CCNNNNNNNGG	4 cut(s)	34, 40, 459, 505
BsmAI	GTCTC	1 cut(s)	274
BsmFI	GGGAC	3 cut(s)	23, 44, 113
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	4 cut(s)	5, 32, 47, 113
BsoBI	CYCGRG	1 cut(s)	458
Bsp119I	TTCGAA	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	354, 383
BspANI	GGCC	4 cut(s)	5, 32, 47, 113
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	4 cut(s)	33, 39, 48, 70
BspPI	GGATC	1 cut(s)	378
BspQI	GCTCTTC	1 cut(s)	684
BspT104I	TTCGAA	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	410
BsrI	ACTGG	2 cut(s)	310, 673
BssAI	RCCGGY	1 cut(s)	410
BssECI	CCNNGG	3 cut(s)	27, 33, 458
BssMI	GATC	2 cut(s)	354, 383
BssNI	GRCGYC	4 cut(s)	57, 126, 294, 399
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	2 cut(s)	253, 406
Bst6I	CTCTTC	2 cut(s)	227, 684
BstACI	GRCGYC	4 cut(s)	57, 126, 294, 399
BstBI	TTCGAA	1 cut(s)	168
BstC8I	GCNNGC	3 cut(s)	412, 546, 662
BstDEI	CTNAG	1 cut(s)	633
BstF5I	GGATG	4 cut(s)	135, 147, 516, 679
BstH2I	RGCGCY	1 cut(s)	633
BstHHI	GCGC	1 cut(s)	632
BstKTI	GATC	2 cut(s)	357, 386
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	2 cut(s)	354, 383
BstMCI	CGRYCG	1 cut(s)	357
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 200, 209, 407, 545, 683
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	7 cut(s)	27, 33, 39, 108, 363, 457, 458
BstV1I	GCAGC	1 cut(s)	510
BstV2I	GAAGAC	2 cut(s)	157, 247
BstXI	CCANNNNNNTGG	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	113
BsuRI	GGCC	4 cut(s)	5, 32, 47, 113
BtsCI	GGATG	4 cut(s)	135, 147, 516, 679
BtsIMutI	CAGTG	1 cut(s)	666
Cac8I	GCNNGC	3 cut(s)	412, 546, 662
CciI	TCATGA	1 cut(s)	691
CfoI	GCGC	1 cut(s)	632
Cfr10I	RCCGGY	1 cut(s)	410
Cfr13I	GGNCC	5 cut(s)	31, 37, 46, 112, 475
Cfr9I	CCCGGG	1 cut(s)	458
CseI	GACGC	2 cut(s)	302, 407
CviAII	CATG	1 cut(s)	692
DdeI	CTNAG	1 cut(s)	633
DpnI	GATC	2 cut(s)	356, 385
DpnII	GATC	2 cut(s)	354, 383
DrdI	GACNNNNNNGTC	1 cut(s)	404
DseDI	GACNNNNNNGTC	1 cut(s)	404
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	227, 684
EarI	CTCTTC	2 cut(s)	227, 684
EciI	GGCGGA	3 cut(s)	95, 181, 265
Eco47I	GGWCC	2 cut(s)	37, 475
Eco57I	CTGAAG	1 cut(s)	665
Eco88I	CYCGRG	1 cut(s)	458
EcoO109I	RGGNCCY	2 cut(s)	46, 475
EcoRII	CCWGG	1 cut(s)	108
EcoT22I	ATGCAT	1 cut(s)	700
FaeI	CATG	1 cut(s)	695
FaiI	YATR	6 cut(s)	375, 468, 618, 641, 693, 700
FaqI	GGGAC	3 cut(s)	23, 44, 113
FatI	CATG	1 cut(s)	691
Fnu4HI	GCNGC	5 cut(s)	6, 9, 12, 213, 524
FokI	GGATG	4 cut(s)	122, 134, 523, 686
Fsp4HI	GCNGC	5 cut(s)	6, 9, 12, 213, 524
GlaI	GCGC	1 cut(s)	631
GluI	GCNGC	5 cut(s)	6, 9, 12, 213, 524
HaeII	RGCGCY	1 cut(s)	633
HaeIII	GGCC	4 cut(s)	5, 32, 47, 113
HapII	CCGG	7 cut(s)	29, 35, 41, 365, 411, 459, 499
HgaI	GACGC	2 cut(s)	302, 407
HhaI	GCGC	1 cut(s)	632
Hin1I	GRCGYC	4 cut(s)	57, 126, 294, 399
Hin1II	CATG	1 cut(s)	695
Hin6I	GCGC	1 cut(s)	630
HinP1I	GCGC	1 cut(s)	630
HpaII	CCGG	7 cut(s)	29, 35, 41, 365, 411, 459, 499
HphI	GGTGA	4 cut(s)	217, 241, 407, 562
Hpy188I	TCNGA	1 cut(s)	383
Hpy188III	TCNNGA	5 cut(s)	263, 344, 352, 565, 692
Hpy99I	CGWCG	5 cut(s)	59, 128, 296, 362, 410
HpyAV	CCTTC	3 cut(s)	247, 256, 499
HpyCH4III	ACNGT	2 cut(s)	253, 406
HpyCH4IV	ACGT	2 cut(s)	57, 126
HpyCH4V	TGCA	3 cut(s)	643, 660, 698
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 200, 209, 407, 545, 683
HpyF3I	CTNAG	1 cut(s)	633
HpySE526I	ACGT	2 cut(s)	57, 126
Hsp92I	GRCGYC	4 cut(s)	57, 126, 294, 399
Hsp92II	CATG	1 cut(s)	695
HspAI	GCGC	1 cut(s)	630
KroI	GCCGGC	1 cut(s)	410
KroNI	GCCGGC	1 cut(s)	412
Kzo9I	GATC	2 cut(s)	354, 383
LguI	GCTCTTC	1 cut(s)	684
LmnI	GCTCC	3 cut(s)	74, 194, 308
Lsp1109I	GCAGC	1 cut(s)	510
LweI	GCATC	2 cut(s)	664, 685
MaeII	ACGT	2 cut(s)	57, 126
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	2 cut(s)	356, 385
MboI	GATC	2 cut(s)	354, 383
MboII	GAAGA	6 cut(s)	157, 214, 247, 370, 565, 671
MmeI	TCCRAC	1 cut(s)	330
Mph1103I	ATGCAT	1 cut(s)	700
MroNI	GCCGGC	1 cut(s)	410
MseI	TTAA	1 cut(s)	609
MslI	CAYNNNNRTG	1 cut(s)	77
MspI	CCGG	7 cut(s)	29, 35, 41, 365, 411, 459, 499
MspR9I	CCNGG	7 cut(s)	29, 35, 41, 110, 365, 459, 460
Mva1269I	GAATGC	1 cut(s)	607
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	6 cut(s)	11, 200, 209, 407, 545, 683
NaeI	GCCGGC	1 cut(s)	412
NciI	CCSGG	6 cut(s)	29, 35, 41, 365, 459, 460
NdeII	GATC	2 cut(s)	354, 383
NgoMIV	GCCGGC	1 cut(s)	410
NlaIII	CATG	1 cut(s)	695
NlaIV	GGNNCC	4 cut(s)	33, 39, 48, 70
NmuCI	GTSAC	1 cut(s)	395
NsiI	ATGCAT	1 cut(s)	700
NspV	TTCGAA	1 cut(s)	168
PagI	TCATGA	1 cut(s)	691
PciSI	GCTCTTC	1 cut(s)	684
PcsI	WCGNNNNNNNCGW	2 cut(s)	414, 536
PctI	GAATGC	1 cut(s)	607
PdiI	GCCGGC	1 cut(s)	412
PfoI	TCCNGGA	1 cut(s)	39
PkrI	GCNGC	5 cut(s)	7, 10, 13, 214, 525
Ple19I	CGATCG	1 cut(s)	357
PpuMI	RGGWCCY	1 cut(s)	475
Psp5II	RGGWCCY	1 cut(s)	475
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	4 cut(s)	33, 39, 48, 70
PspPI	GGNCC	5 cut(s)	31, 37, 46, 112, 475
PspPPI	RGGWCCY	1 cut(s)	475
PvuI	CGATCG	1 cut(s)	357
RseI	CAYNNNNRTG	1 cut(s)	77
SapI	GCTCTTC	1 cut(s)	684
SaqAI	TTAA	1 cut(s)	609
SatI	GCNGC	5 cut(s)	6, 9, 12, 213, 524
Sau3AI	GATC	2 cut(s)	354, 383
Sau96I	GGNCC	5 cut(s)	31, 37, 46, 112, 475
ScrFI	CCNGG	7 cut(s)	29, 35, 41, 110, 365, 459, 460
SetI	ASST	8 cut(s)	19, 60, 129, 147, 230, 305, 351, 480
SfaNI	GCATC	2 cut(s)	664, 685
SfuI	TTCGAA	1 cut(s)	168
SinI	GGWCC	2 cut(s)	37, 475
SmaI	CCCGGG	1 cut(s)	460
SmiMI	CAYNNNNRTG	1 cut(s)	77
StyD4I	CCNGG	7 cut(s)	27, 33, 39, 108, 363, 457, 458
TaaI	ACNGT	2 cut(s)	253, 406
TaiI	ACGT	2 cut(s)	60, 129
TaqI	TCGA	5 cut(s)	54, 168, 264, 345, 357
TauI	GCSGC	4 cut(s)	8, 11, 14, 215
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TscAI	CASTG	1 cut(s)	673
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	1 cut(s)	523
Tsp45I	GTSAC	1 cut(s)	395
TspGWI	ACGGA	1 cut(s)	151
TspMI	CCCGGG	1 cut(s)	458
TspRI	CASTG	1 cut(s)	673
VpaK11BI	GGWCC	2 cut(s)	37, 475
XmaI	CCCGGG	1 cut(s)	458
ZraI	GACGTC	2 cut(s)	58, 127
Zsp2I	ATGCAT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.