Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0012113

Physical Location & Seq

Genomic Coordinates Reverse (-)

41119658 .. 41120281

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG275000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGGCTACCCTCTCTTCGCCCGTATCCGCCTGGCCCACCCCATCGACGTCCCCCACATCCACAAGCTCATCCACCAGATGTCCGTCTTCGAACGCCTCGCCGACCATTGCTCCGCCACCGAAGCCTCCCTCGCCGCCACTCTCTTCACCTCCCCTCCCTTCAAGTCCTTCACCGTCTTCCTCCTCGAAGTCTCCTCCGCCCCTTTCCCCAACGACGCCCATAGCTCCAACCAGTTCTACCACCCCACTATCAAAACCCTCAATCTCGACCTCCCGATCGACGACCCGGAGAGCCATGTCTTCCGATCCAGCGGCGGTGACGCCACCGTCGCTGGGTTTGTGCTGTTTTTCCCGAACTACTCTACTTTTCTCGCCAAGCCGGGGTTTTATGTGGAGGACTTGTTTGTGAGGGAGTGCTACCGGAGGAAGGGGCTGGGGAAAATGCTGCTTTCGGCGGTGGCGAAGCAGGCGGTGAAGATGGGGTTCGGGAGAGTGGAGTGGGTTGTGCTGGATTGGAATGTGAATGCGATTAAGTTTTATGAGGAAATGGGGGCTAAGATTATGCAGGAGTGGAGGATTTGCAGGCTCACTGGGGATGCTCTTCAGGCTTATCATGATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006591 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

207

Amino Acids

23.39

Weight (kDa)

6.75

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	92 - 184	4.9e-17	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	109 - 184	6.8e-09	Acetyltransferase (GNAT) domain
Acetyltransf_10	PF13673	112 - 184	7.8e-07	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39020 AT2G39030
fragaria_vesca	FvH4_7g19050
malus_domestica	MD01G1105800.v1.1
prunus_persica	Prupe.2G211200_v2.0.a1 Prupe.2G211200_v2.0.a1 Prupe.2G211200_v2.0.a1
pyrus_communis	pycom01g13260
rosa_chinensis	RchiOBHm_Chr1g0362951
rosa_laevigata	RLG00000027608
rosa_multiflora	Rmu_sc0000174.1_g000011 Rmu_sc0012461.1_g000003
rosa_roxburghii	Rroxscaffold_4G00293610
rosa_rugosa	Rorug01G0302300
rosa_samantha	Rh1AG312000 Rh1BG275000 Rh1CG292300 Rh1DG305700
rosa_wichuraiana	Rw1G027640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	326
AatII	GACGTC	1 cut(s)	51
AciI	CCGC	8 cut(s)	28, 114, 135, 198, 312, 315, 455, 470
AclWI	GGATC	1 cut(s)	300
AcuI	CTGAAG	1 cut(s)	587
AcyI	GRCGYC	3 cut(s)	48, 216, 321
AfiI	CCNNNNNNNGG	3 cut(s)	333, 381, 427
AgsI	TTSAA	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	2 cut(s)	67, 225
AluI	AGCT	2 cut(s)	67, 225
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	1 cut(s)	300
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	445
AspS9I	GGNCC	1 cut(s)	34
AsuC2I	CCSGG	2 cut(s)	287, 381
AsuHPI	GGTGA	4 cut(s)	139, 163, 329, 484
AsuII	TTCGAA	1 cut(s)	90
BbsI	GAAGAC	3 cut(s)	79, 169, 292
BbvI	GCAGC	1 cut(s)	432
BccI	CCATC	2 cut(s)	50, 472
BciT130I	CCWGG	1 cut(s)	32
BciVI	GTATCC	1 cut(s)	35
BcnI	CCSGG	2 cut(s)	287, 381
BcoDI	GTCTC	1 cut(s)	196
BfuI	GTATCC	1 cut(s)	35
BisI	GCNGC	3 cut(s)	135, 313, 446
BlsI	GCNGC	3 cut(s)	136, 314, 447
Bme1390I	CCNGG	3 cut(s)	32, 287, 381
BmgT120I	GGNCC	1 cut(s)	34
BmrFI	CCNGG	3 cut(s)	32, 287, 381
BmrI	ACTGGG	1 cut(s)	600
BmsI	GCATC	2 cut(s)	586, 607
BmuI	ACTGGG	1 cut(s)	600
BpiI	GAAGAC	3 cut(s)	79, 169, 292
Bpu14I	TTCGAA	1 cut(s)	90
BpuMI	CCSGG	2 cut(s)	287, 381
BsaHI	GRCGYC	3 cut(s)	48, 216, 321
BsaJI	CCNNGG	1 cut(s)	380
BsaWI	WCCGGW	1 cut(s)	420
BsaXI	ACNNNNNCTCC	6 cut(s)	95, 125, 139, 169, 386, 416
Bsc4I	CCNNNNNNNGG	3 cut(s)	333, 381, 427
Bse1I	ACTGG	2 cut(s)	232, 595
Bse3DI	GCAATG	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	3 cut(s)	57, 69, 601
BseLI	CCNNNNNNNGG	3 cut(s)	333, 381, 427
BseMI	GCAATG	1 cut(s)	106
BseNI	ACTGG	2 cut(s)	232, 595
BseRI	GAGGAG	2 cut(s)	173, 184
BseXI	GCAGC	1 cut(s)	432
BseYI	CCCAGC	2 cut(s)	332, 433
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	1 cut(s)	35
BsiEI	CGRYCG	1 cut(s)	279
BsiSI	CCGG	3 cut(s)	287, 380, 421
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	3 cut(s)	333, 381, 427
BsmAI	GTCTC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	529
BsnI	GGCC	1 cut(s)	35
Bsp119I	TTCGAA	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	276, 305
BspACI	CCGC	8 cut(s)	28, 114, 135, 198, 312, 315, 455, 470
BspANI	GGCC	1 cut(s)	35
BspHI	TCATGA	1 cut(s)	613
BspPI	GGATC	1 cut(s)	300
BspQI	GCTCTTC	1 cut(s)	606
BspT104I	TTCGAA	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	232, 595
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	2 cut(s)	276, 305
BssNI	GRCGYC	3 cut(s)	48, 216, 321
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	2 cut(s)	175, 328
Bst6I	CTCTTC	3 cut(s)	20, 149, 606
BstACI	GRCGYC	3 cut(s)	48, 216, 321
BstBI	TTCGAA	1 cut(s)	90
BstC8I	GCNNGC	2 cut(s)	468, 584
BstDEI	CTNAG	1 cut(s)	555
BstF5I	GGATG	3 cut(s)	57, 69, 601
BstKTI	GATC	2 cut(s)	279, 308
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	2 cut(s)	276, 305
BstMCI	CGRYCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 131, 329, 467, 605
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	3 cut(s)	30, 285, 379
BstV1I	GCAGC	1 cut(s)	432
BstV2I	GAAGAC	3 cut(s)	79, 169, 292
BsuI	GTATCC	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	35
BtsCI	GGATG	3 cut(s)	57, 69, 601
BtsIMutI	CAGTG	1 cut(s)	588
Cac8I	GCNNGC	2 cut(s)	468, 584
CciI	TCATGA	1 cut(s)	613
Cfr13I	GGNCC	1 cut(s)	34
CseI	GACGC	2 cut(s)	224, 329
CviAII	CATG	2 cut(s)	296, 614
DdeI	CTNAG	1 cut(s)	555
DpnI	GATC	2 cut(s)	278, 307
DpnII	GATC	2 cut(s)	276, 305
DrdI	GACNNNNNNGTC	1 cut(s)	326
DseDI	GACNNNNNNGTC	1 cut(s)	326
Eam1104I	CTCTTC	3 cut(s)	20, 149, 606
EarI	CTCTTC	3 cut(s)	20, 149, 606
EciI	GGCGGA	3 cut(s)	17, 103, 187
Eco57I	CTGAAG	1 cut(s)	587
EcoRII	CCWGG	1 cut(s)	30
EcoT22I	ATGCAT	1 cut(s)	622
FaeI	CATG	2 cut(s)	299, 617
FaiI	YATR	7 cut(s)	222, 297, 390, 540, 563, 615, 622
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	2 cut(s)	295, 613
Fnu4HI	GCNGC	3 cut(s)	135, 313, 446
FokI	GGATG	3 cut(s)	44, 56, 608
Fsp4HI	GCNGC	3 cut(s)	135, 313, 446
GluI	GCNGC	3 cut(s)	135, 313, 446
GsaI	CCCAGC	2 cut(s)	336, 437
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	3 cut(s)	287, 380, 421
HgaI	GACGC	2 cut(s)	224, 329
Hin1I	GRCGYC	3 cut(s)	48, 216, 321
Hin1II	CATG	2 cut(s)	299, 617
HpaII	CCGG	3 cut(s)	287, 380, 421
HphI	GGTGA	4 cut(s)	139, 163, 329, 484
Hpy188I	TCNGA	1 cut(s)	305
Hpy188III	TCNNGA	5 cut(s)	266, 274, 352, 487, 614
Hpy99I	CGWCG	4 cut(s)	50, 218, 284, 332
HpyAV	CCTTC	3 cut(s)	169, 178, 421
HpyCH4III	ACNGT	2 cut(s)	175, 328
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	3 cut(s)	565, 582, 620
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 131, 329, 467, 605
HpyF3I	CTNAG	1 cut(s)	555
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	3 cut(s)	48, 216, 321
Hsp92II	CATG	2 cut(s)	299, 617
Kzo9I	GATC	2 cut(s)	276, 305
LguI	GCTCTTC	1 cut(s)	606
LmnI	GCTCC	2 cut(s)	116, 230
Lsp1109I	GCAGC	1 cut(s)	432
LweI	GCATC	2 cut(s)	586, 607
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	2 cut(s)	278, 307
MboI	GATC	2 cut(s)	276, 305
MboII	GAAGA	7 cut(s)	7, 79, 136, 169, 292, 487, 593
MmeI	TCCRAC	1 cut(s)	252
Mph1103I	ATGCAT	1 cut(s)	622
MseI	TTAA	1 cut(s)	531
MspA1I	CMGCKG	1 cut(s)	312
MspI	CCGG	3 cut(s)	287, 380, 421
MspR9I	CCNGG	3 cut(s)	32, 287, 381
Mva1269I	GAATGC	1 cut(s)	529
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	5 cut(s)	122, 131, 329, 467, 605
NciI	CCSGG	2 cut(s)	287, 381
NdeII	GATC	2 cut(s)	276, 305
NlaIII	CATG	2 cut(s)	299, 617
NmuCI	GTSAC	1 cut(s)	317
NsiI	ATGCAT	1 cut(s)	622
NspV	TTCGAA	1 cut(s)	90
PagI	TCATGA	1 cut(s)	613
PciSI	GCTCTTC	1 cut(s)	606
PcsI	WCGNNNNNNNCGW	1 cut(s)	458
PctI	GAATGC	1 cut(s)	529
PkrI	GCNGC	3 cut(s)	136, 314, 447
Ple19I	CGATCG	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	30
PspFI	CCCAGC	2 cut(s)	332, 433
PspGI	CCWGG	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	34
PvuI	CGATCG	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	606
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	3 cut(s)	135, 313, 446
Sau3AI	GATC	2 cut(s)	276, 305
Sau96I	GGNCC	1 cut(s)	34
ScrFI	CCNGG	3 cut(s)	32, 287, 381
SetI	ASST	5 cut(s)	51, 69, 152, 227, 273
SfaNI	GCATC	2 cut(s)	586, 607
SfuI	TTCGAA	1 cut(s)	90
SsiI	CCGC	8 cut(s)	28, 114, 135, 198, 312, 315, 455, 470
StyD4I	CCNGG	3 cut(s)	30, 285, 379
TaaI	ACNGT	2 cut(s)	175, 328
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	5 cut(s)	45, 90, 186, 267, 279
TauI	GCSGC	2 cut(s)	137, 315
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TscAI	CASTG	1 cut(s)	595
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	1 cut(s)	445
Tsp45I	GTSAC	1 cut(s)	317
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	595
ZraI	GACGTC	1 cut(s)	49
Zsp2I	ATGCAT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.