Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012461.1

Orthogroup ID

OG0012113

Physical Location & Seq

Genomic Coordinates Reverse (-)

9946 .. 10647

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012461.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atggccgccgccgcgcctccaccgcccccagccccggtcccggaggcccccatcgacgtccccagagggtccaccccaatgggctaccctctcttcgcccgtatccgcctggcccaccccaccgacgtcccccacatccacaagctcatccaccagatgtccgtcttcgaacgcctggccgaccaatgctccgccaccgaagcctccctcgccgccactctcttcacctcccctcccttcaagtccttcaccgtcttcctcctcgaagtctcctccgcccctctccccaacgacgcccatagctccaaccagttctaccaccccactctcaaaaccctcaatctcgacctcccgatcgacgacccggagagccatgtcttccgatccagcggcggtgacgccaccgtcgctgggtttgtgctgtttttcccgaactattctacttttctcgccaagccggggttttatgtggaggacttgtttgtgagggagtgctacaggaggaaggggatggggaaaatgctgctttcggcggtggccaagcaggcggtgaagatggggttcgggagagtggagtgggttgtgctggattggaatgtgaatgcgattaagttttatgaggaaatgggggctaagattatgcaggagtggaggatttgcaggctcactggggatgctcttcaggcttatcatgatgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006591 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

233

Amino Acids

25.84

Weight (kDa)

6.44

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39020 AT2G39030
fragaria_vesca	FvH4_7g19050
malus_domestica	MD01G1105800.v1.1
prunus_persica	Prupe.2G211200_v2.0.a1 Prupe.2G211200_v2.0.a1 Prupe.2G211200_v2.0.a1
pyrus_communis	pycom01g13260
rosa_chinensis	RchiOBHm_Chr1g0362951
rosa_laevigata	RLG00000027608
rosa_multiflora	Rmu_sc0000174.1_g000011 Rmu_sc0012461.1_g000003
rosa_roxburghii	Rroxscaffold_4G00293610
rosa_rugosa	Rorug01G0302300
rosa_samantha	Rh1AG312000 Rh1BG275000 Rh1CG292300 Rh1DG305700
rosa_wichuraiana	Rw1G027640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	404
AatII	GACGTC	2 cut(s)	60, 129
AccII	CGCG	1 cut(s)	14
AclWI	GGATC	1 cut(s)	378
AcoI	YGGCCR	3 cut(s)	3, 177, 537
AcuI	CTGAAG	1 cut(s)	665
AcyI	GRCGYC	4 cut(s)	57, 126, 294, 399
AfiI	CCNNNNNNNGG	4 cut(s)	34, 40, 411, 459
AgsI	TTSAA	1 cut(s)	241
AjnI	CCWGG	2 cut(s)	108, 174
AluBI	AGCT	2 cut(s)	145, 303
AluI	AGCT	2 cut(s)	145, 303
Alw26I	GTCTC	1 cut(s)	274
AlwI	GGATC	1 cut(s)	378
AoxI	GGCC	5 cut(s)	3, 45, 111, 177, 537
ApeKI	GCWGC	1 cut(s)	523
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	4 cut(s)	37, 46, 69, 112
AsuC2I	CCSGG	4 cut(s)	35, 41, 365, 459
AsuHPI	GGTGA	4 cut(s)	217, 241, 407, 562
AsuII	TTCGAA	1 cut(s)	168
AvaII	GGWCC	2 cut(s)	37, 69
BalI	TGGCCA	1 cut(s)	539
BbsI	GAAGAC	3 cut(s)	157, 247, 370
BbvI	GCAGC	1 cut(s)	510
BccI	CCATC	3 cut(s)	59, 505, 550
BciT130I	CCWGG	2 cut(s)	110, 176
BciVI	GTATCC	1 cut(s)	113
BcnI	CCSGG	4 cut(s)	35, 41, 365, 459
BcoDI	GTCTC	1 cut(s)	274
BfmI	CTRYAG	1 cut(s)	496
BfuI	GTATCC	1 cut(s)	113
BglI	GCCNNNNNGGC	1 cut(s)	545
BisI	GCNGC	6 cut(s)	6, 9, 12, 213, 391, 524
BlsI	GCNGC	6 cut(s)	7, 10, 13, 214, 392, 525
Bme1390I	CCNGG	6 cut(s)	35, 41, 110, 176, 365, 459
Bme18I	GGWCC	2 cut(s)	37, 69
BmgT120I	GGNCC	4 cut(s)	37, 46, 69, 112
BmiI	GGNNCC	3 cut(s)	39, 48, 70
BmrFI	CCNGG	6 cut(s)	35, 41, 110, 176, 365, 459
BmrI	ACTGGG	1 cut(s)	678
BmsI	GCATC	2 cut(s)	664, 685
BmuI	ACTGGG	1 cut(s)	678
BpiI	GAAGAC	3 cut(s)	157, 247, 370
Bpu14I	TTCGAA	1 cut(s)	168
BpuMI	CCSGG	4 cut(s)	35, 41, 365, 459
BsaHI	GRCGYC	4 cut(s)	57, 126, 294, 399
BsaJI	CCNNGG	2 cut(s)	33, 458
BsaXI	ACNNNNNCTCC	6 cut(s)	173, 203, 217, 247, 464, 494
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 40, 411, 459
Bse1I	ACTGG	2 cut(s)	310, 673
BseBI	CCWGG	2 cut(s)	110, 176
BseDI	CCNNGG	2 cut(s)	33, 458
BseGI	GGATG	4 cut(s)	135, 147, 516, 679
BseLI	CCNNNNNNNGG	4 cut(s)	34, 40, 411, 459
BseNI	ACTGG	2 cut(s)	310, 673
BseRI	GAGGAG	2 cut(s)	251, 262
BseXI	GCAGC	1 cut(s)	510
BseYI	CCCAGC	2 cut(s)	28, 410
Bsh1236I	CGCG	1 cut(s)	14
Bsh1285I	CGRYCG	1 cut(s)	357
BshFI	GGCC	5 cut(s)	5, 47, 113, 179, 539
BsiEI	CGRYCG	1 cut(s)	357
BsiSI	CCGG	4 cut(s)	35, 41, 365, 458
BslFI	GGGAC	3 cut(s)	23, 44, 113
BslI	CCNNNNNNNGG	4 cut(s)	34, 40, 411, 459
BsmAI	GTCTC	1 cut(s)	274
BsmFI	GGGAC	3 cut(s)	23, 44, 113
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	5 cut(s)	5, 47, 113, 179, 539
Bsp119I	TTCGAA	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	354, 383
BspANI	GGCC	5 cut(s)	5, 47, 113, 179, 539
BspFNI	CGCG	1 cut(s)	14
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	3 cut(s)	39, 48, 70
BspPI	GGATC	1 cut(s)	378
BspQI	GCTCTTC	1 cut(s)	684
BspT104I	TTCGAA	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	310, 673
BssECI	CCNNGG	2 cut(s)	33, 458
BssMI	GATC	2 cut(s)	354, 383
BssNI	GRCGYC	4 cut(s)	57, 126, 294, 399
Bst2UI	CCWGG	2 cut(s)	110, 176
Bst4CI	ACNGT	2 cut(s)	253, 406
Bst6I	CTCTTC	3 cut(s)	98, 227, 684
BstACI	GRCGYC	4 cut(s)	57, 126, 294, 399
BstBI	TTCGAA	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	546, 662
BstDEI	CTNAG	1 cut(s)	633
BstF5I	GGATG	4 cut(s)	135, 147, 516, 679
BstFNI	CGCG	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	2 cut(s)	357, 386
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	2 cut(s)	354, 383
BstMCI	CGRYCG	1 cut(s)	357
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 22, 200, 209, 407, 545, 683
BstNI	CCWGG	2 cut(s)	110, 176
BstSCI	CCNGG	6 cut(s)	33, 39, 108, 174, 363, 457
BstSFI	CTRYAG	1 cut(s)	496
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	510
BstV2I	GAAGAC	3 cut(s)	157, 247, 370
BstXI	CCANNNNNNTGG	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	113
BsuRI	GGCC	5 cut(s)	5, 47, 113, 179, 539
BtsCI	GGATG	4 cut(s)	135, 147, 516, 679
BtsIMutI	CAGTG	1 cut(s)	666
Cac8I	GCNNGC	2 cut(s)	546, 662
CciI	TCATGA	1 cut(s)	691
CfoI	GCGC	1 cut(s)	16
Cfr13I	GGNCC	4 cut(s)	37, 46, 69, 112
CseI	GACGC	2 cut(s)	302, 407
CviAII	CATG	2 cut(s)	374, 692
DdeI	CTNAG	1 cut(s)	633
DpnI	GATC	2 cut(s)	356, 385
DpnII	GATC	2 cut(s)	354, 383
DrdI	GACNNNNNNGTC	1 cut(s)	404
DseDI	GACNNNNNNGTC	1 cut(s)	404
EaeI	YGGCCR	3 cut(s)	3, 177, 537
Eam1104I	CTCTTC	3 cut(s)	98, 227, 684
EarI	CTCTTC	3 cut(s)	98, 227, 684
EciI	GGCGGA	3 cut(s)	95, 181, 265
Eco47I	GGWCC	2 cut(s)	37, 69
Eco57I	CTGAAG	1 cut(s)	665
EcoO109I	RGGNCCY	1 cut(s)	46
EcoRII	CCWGG	2 cut(s)	108, 174
EcoT22I	ATGCAT	1 cut(s)	700
FaeI	CATG	2 cut(s)	377, 695
FaiI	YATR	7 cut(s)	300, 375, 468, 618, 641, 693, 700
FaqI	GGGAC	3 cut(s)	23, 44, 113
FatI	CATG	2 cut(s)	373, 691
Fnu4HI	GCNGC	6 cut(s)	6, 9, 12, 213, 391, 524
FokI	GGATG	4 cut(s)	122, 134, 523, 686
Fsp4HI	GCNGC	6 cut(s)	6, 9, 12, 213, 391, 524
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	6 cut(s)	6, 9, 12, 213, 391, 524
GsaI	CCCAGC	2 cut(s)	32, 414
HaeIII	GGCC	5 cut(s)	5, 47, 113, 179, 539
HapII	CCGG	4 cut(s)	35, 41, 365, 458
HgaI	GACGC	2 cut(s)	302, 407
HhaI	GCGC	1 cut(s)	16
Hin1I	GRCGYC	4 cut(s)	57, 126, 294, 399
Hin1II	CATG	2 cut(s)	377, 695
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HpaII	CCGG	4 cut(s)	35, 41, 365, 458
HphI	GGTGA	4 cut(s)	217, 241, 407, 562
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188I	TCNGA	1 cut(s)	383
Hpy188III	TCNNGA	5 cut(s)	344, 352, 430, 565, 692
Hpy8I	GTNNAC	1 cut(s)	72
Hpy99I	CGWCG	5 cut(s)	59, 128, 296, 362, 410
HpyAV	CCTTC	3 cut(s)	247, 256, 499
HpyCH4III	ACNGT	2 cut(s)	253, 406
HpyCH4IV	ACGT	2 cut(s)	57, 126
HpyCH4V	TGCA	3 cut(s)	643, 660, 698
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 22, 200, 209, 407, 545, 683
HpyF3I	CTNAG	1 cut(s)	633
HpySE526I	ACGT	2 cut(s)	57, 126
Hsp92I	GRCGYC	4 cut(s)	57, 126, 294, 399
Hsp92II	CATG	2 cut(s)	377, 695
HspAI	GCGC	1 cut(s)	14
Kzo9I	GATC	2 cut(s)	354, 383
LguI	GCTCTTC	1 cut(s)	684
LmnI	GCTCC	2 cut(s)	194, 308
Lsp1109I	GCAGC	1 cut(s)	510
LweI	GCATC	2 cut(s)	664, 685
MaeII	ACGT	2 cut(s)	57, 126
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	2 cut(s)	356, 385
MboI	GATC	2 cut(s)	354, 383
MboII	GAAGA	7 cut(s)	85, 157, 214, 247, 370, 565, 671
MlsI	TGGCCA	1 cut(s)	539
MluNI	TGGCCA	1 cut(s)	539
MmeI	TCCRAC	1 cut(s)	330
Mox20I	TGGCCA	1 cut(s)	539
Mph1103I	ATGCAT	1 cut(s)	700
MscI	TGGCCA	1 cut(s)	539
MseI	TTAA	1 cut(s)	609
MslI	CAYNNNNRTG	1 cut(s)	77
Msp20I	TGGCCA	1 cut(s)	539
MspA1I	CMGCKG	1 cut(s)	390
MspI	CCGG	4 cut(s)	35, 41, 365, 458
MspR9I	CCNGG	6 cut(s)	35, 41, 110, 176, 365, 459
Mva1269I	GAATGC	1 cut(s)	607
MvaI	CCWGG	2 cut(s)	110, 176
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	7 cut(s)	11, 22, 200, 209, 407, 545, 683
NciI	CCSGG	4 cut(s)	35, 41, 365, 459
NdeII	GATC	2 cut(s)	354, 383
NlaIII	CATG	2 cut(s)	377, 695
NlaIV	GGNNCC	3 cut(s)	39, 48, 70
NmuCI	GTSAC	1 cut(s)	395
NsiI	ATGCAT	1 cut(s)	700
NspV	TTCGAA	1 cut(s)	168
PagI	TCATGA	1 cut(s)	691
PciSI	GCTCTTC	1 cut(s)	684
PctI	GAATGC	1 cut(s)	607
PfoI	TCCNGGA	1 cut(s)	39
PkrI	GCNGC	6 cut(s)	7, 10, 13, 214, 392, 525
Ple19I	CGATCG	1 cut(s)	357
Psp6I	CCWGG	2 cut(s)	108, 174
PspFI	CCCAGC	2 cut(s)	28, 410
PspGI	CCWGG	2 cut(s)	108, 174
PspN4I	GGNNCC	3 cut(s)	39, 48, 70
PspPI	GGNCC	4 cut(s)	37, 46, 69, 112
PvuI	CGATCG	1 cut(s)	357
RseI	CAYNNNNRTG	1 cut(s)	77
SapI	GCTCTTC	1 cut(s)	684
SaqAI	TTAA	1 cut(s)	609
SatI	GCNGC	6 cut(s)	6, 9, 12, 213, 391, 524
Sau3AI	GATC	2 cut(s)	354, 383
Sau96I	GGNCC	4 cut(s)	37, 46, 69, 112
ScrFI	CCNGG	6 cut(s)	35, 41, 110, 176, 365, 459
SetI	ASST	6 cut(s)	60, 129, 147, 230, 305, 351
SfaNI	GCATC	2 cut(s)	664, 685
SfcI	CTRYAG	1 cut(s)	496
SfuI	TTCGAA	1 cut(s)	168
SinI	GGWCC	2 cut(s)	37, 69
SmiMI	CAYNNNNRTG	1 cut(s)	77
StyD4I	CCNGG	6 cut(s)	33, 39, 108, 174, 363, 457
TaaI	ACNGT	2 cut(s)	253, 406
TaiI	ACGT	2 cut(s)	60, 129
TaqI	TCGA	5 cut(s)	54, 168, 264, 345, 357
TauI	GCSGC	5 cut(s)	8, 11, 14, 215, 393
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TscAI	CASTG	1 cut(s)	673
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	1 cut(s)	523
Tsp45I	GTSAC	1 cut(s)	395
TspGWI	ACGGA	1 cut(s)	151
TspRI	CASTG	1 cut(s)	673
VpaK11BI	GGWCC	2 cut(s)	37, 69
ZraI	GACGTC	2 cut(s)	58, 127
Zsp2I	ATGCAT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.