Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0012113

Physical Location & Seq

Genomic Coordinates Forward (+)

13130302 .. 13131003

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027608

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCCGCCGCCGCACCTCCACCGCCCCCAGCCCCGGTCCCGGAGGCCCCCATCGACGTCCCCAGAGGCTCCACCCCAATGGGCCACCCTCTCTTCGCCCGTATCCGCCTGGCCCACGCCACCGACGTCCCCCACATCCACAAGCTCATCCACCAGATGTCCGTCTTCGAACGCCTCGCCGACCAATGCTCCGCCACCGAAGCCTCCCTCGCCGCCACTCTCTTCACCTCCCCTCCCTTCAAGTCCTTCACCGTCTTCGTCCTCGAAGTCTCCGCCGCCCCTTTCCCCAACGACGCCCATAGCTCCAACCAGTTCTACCACCCCACTATCAAAACCCTCAATCTCGACCTCCCGCTCGACGACCCGGAGAGCCATATCTTCCGATCCAGCGGCGGTGACGCCACCGTCGCTGGGTTCGTGCTGTTTTTCCCGAACTATTCTACTTTTCTCGCCAAGCCGGGGTTTTATGTGGAGGACTTGTTTGTGAGGGAGTGCTACAGGAGGAAGGGACTGGGGAAAATGCTGCTTTCAGCGGTGGCGAAGCAGGCGGTGAAGATGGGGTTCGGGAGAGTGGAGTGGGTTGTGCTGGATTGGAATGTGAATGCGATTAAGTTTTATGAGGAAATGGGGGCTAAGATTATGCAGGAGTGGAGGATTTGCAGGCTTACTGGAGATGCTCTTCAGGCTTATCATGAAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006591 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

234

Amino Acids

25.8

Weight (kDa)

6.5

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	118 - 210	6.2e-17	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	135 - 210	1e-08	Acetyltransferase (GNAT) domain
Acetyltransf_10	PF13673	152 - 210	1.4e-06	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39020 AT2G39030
fragaria_vesca	FvH4_7g19050
malus_domestica	MD01G1105800.v1.1
prunus_persica	Prupe.2G211200_v2.0.a1 Prupe.2G211200_v2.0.a1 Prupe.2G211200_v2.0.a1
pyrus_communis	pycom01g13260
rosa_chinensis	RchiOBHm_Chr1g0362951
rosa_laevigata	RLG00000027608
rosa_multiflora	Rmu_sc0000174.1_g000011 Rmu_sc0012461.1_g000003
rosa_roxburghii	Rroxscaffold_4G00293610
rosa_rugosa	Rorug01G0302300
rosa_samantha	Rh1AG312000 Rh1BG275000 Rh1CG292300 Rh1DG305700
rosa_wichuraiana	Rw1G027640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	404
AatII	GACGTC	2 cut(s)	60, 129
AccBSI	CCGCTC	1 cut(s)	355
AclWI	GGATC	1 cut(s)	378
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	665
AcyI	GRCGYC	4 cut(s)	57, 126, 294, 399
AfiI	CCNNNNNNNGG	4 cut(s)	34, 40, 411, 459
AgsI	TTSAA	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	2 cut(s)	145, 303
AluI	AGCT	2 cut(s)	145, 303
Alw26I	GTCTC	1 cut(s)	274
AlwI	GGATC	1 cut(s)	378
AoxI	GGCC	4 cut(s)	3, 45, 82, 111
ApeKI	GCWGC	1 cut(s)	523
AspS9I	GGNCC	4 cut(s)	37, 46, 82, 112
AsuC2I	CCSGG	4 cut(s)	35, 41, 365, 459
AsuHPI	GGTGA	4 cut(s)	217, 241, 407, 562
AsuII	TTCGAA	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	37
BbsI	GAAGAC	2 cut(s)	157, 247
BbvI	GCAGC	1 cut(s)	510
BccI	CCATC	2 cut(s)	59, 550
BciT130I	CCWGG	1 cut(s)	110
BciVI	GTATCC	1 cut(s)	113
BcnI	CCSGG	4 cut(s)	35, 41, 365, 459
BcoDI	GTCTC	1 cut(s)	274
BfmI	CTRYAG	1 cut(s)	496
BfuI	GTATCC	1 cut(s)	113
BisI	GCNGC	7 cut(s)	6, 9, 12, 213, 276, 391, 524
BlsI	GCNGC	7 cut(s)	7, 10, 13, 214, 277, 392, 525
Bme1390I	CCNGG	5 cut(s)	35, 41, 110, 365, 459
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	4 cut(s)	37, 46, 82, 112
BmiI	GGNNCC	3 cut(s)	39, 48, 70
BmrFI	CCNGG	5 cut(s)	35, 41, 110, 365, 459
BmrI	ACTGGG	1 cut(s)	521
BmsI	GCATC	1 cut(s)	664
BmuI	ACTGGG	1 cut(s)	521
BpiI	GAAGAC	2 cut(s)	157, 247
BpmI	CTGGAG	1 cut(s)	690
Bpu14I	TTCGAA	1 cut(s)	168
BpuMI	CCSGG	4 cut(s)	35, 41, 365, 459
BsaHI	GRCGYC	4 cut(s)	57, 126, 294, 399
BsaJI	CCNNGG	2 cut(s)	33, 458
BsaXI	ACNNNNNCTCC	6 cut(s)	173, 203, 217, 247, 464, 494
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 40, 411, 459
Bse1I	ACTGG	3 cut(s)	310, 516, 673
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	33, 458
BseGI	GGATG	2 cut(s)	135, 147
BseLI	CCNNNNNNNGG	4 cut(s)	34, 40, 411, 459
BseNI	ACTGG	3 cut(s)	310, 516, 673
BseXI	GCAGC	1 cut(s)	510
BseYI	CCCAGC	2 cut(s)	28, 410
BshFI	GGCC	4 cut(s)	5, 47, 84, 113
BsiSI	CCGG	4 cut(s)	35, 41, 365, 458
BslFI	GGGAC	4 cut(s)	23, 44, 113, 522
BslI	CCNNNNNNNGG	4 cut(s)	34, 40, 411, 459
BsmAI	GTCTC	1 cut(s)	274
BsmFI	GGGAC	4 cut(s)	23, 44, 113, 522
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	4 cut(s)	5, 47, 84, 113
Bsp119I	TTCGAA	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	383
BspANI	GGCC	4 cut(s)	5, 47, 84, 113
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	3 cut(s)	39, 48, 70
BspPI	GGATC	1 cut(s)	378
BspQI	GCTCTTC	1 cut(s)	684
BspT104I	TTCGAA	1 cut(s)	168
BsrBI	CCGCTC	1 cut(s)	355
BsrI	ACTGG	3 cut(s)	310, 516, 673
BssECI	CCNNGG	2 cut(s)	33, 458
BssMI	GATC	1 cut(s)	383
BssNI	GRCGYC	4 cut(s)	57, 126, 294, 399
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	2 cut(s)	253, 406
Bst6I	CTCTTC	3 cut(s)	98, 227, 684
BstACI	GRCGYC	4 cut(s)	57, 126, 294, 399
BstBI	TTCGAA	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	546, 662
BstDEI	CTNAG	1 cut(s)	633
BstF5I	GGATG	2 cut(s)	135, 147
BstKTI	GATC	1 cut(s)	386
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	383
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 200, 209, 407, 545, 683
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	5 cut(s)	33, 39, 108, 363, 457
BstSFI	CTRYAG	1 cut(s)	496
BstV1I	GCAGC	1 cut(s)	510
BstV2I	GAAGAC	2 cut(s)	157, 247
BstXI	CCANNNNNNTGG	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	113
BsuRI	GGCC	4 cut(s)	5, 47, 84, 113
BtsCI	GGATG	2 cut(s)	135, 147
Cac8I	GCNNGC	2 cut(s)	546, 662
CciI	TCATGA	1 cut(s)	691
Cfr13I	GGNCC	4 cut(s)	37, 46, 82, 112
CseI	GACGC	2 cut(s)	302, 407
CviAII	CATG	1 cut(s)	692
DdeI	CTNAG	1 cut(s)	633
DpnI	GATC	1 cut(s)	385
DpnII	GATC	1 cut(s)	383
DrdI	GACNNNNNNGTC	1 cut(s)	404
DseDI	GACNNNNNNGTC	1 cut(s)	404
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	98, 227, 684
EarI	CTCTTC	3 cut(s)	98, 227, 684
EciI	GGCGGA	3 cut(s)	95, 181, 262
Eco47I	GGWCC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	665
EcoO109I	RGGNCCY	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	108
FaeI	CATG	1 cut(s)	695
FaiI	YATR	6 cut(s)	300, 375, 468, 618, 641, 693
FaqI	GGGAC	4 cut(s)	23, 44, 113, 522
FatI	CATG	1 cut(s)	691
FauI	CCCGC	1 cut(s)	360
Fnu4HI	GCNGC	7 cut(s)	6, 9, 12, 213, 276, 391, 524
FokI	GGATG	2 cut(s)	122, 134
Fsp4HI	GCNGC	7 cut(s)	6, 9, 12, 213, 276, 391, 524
GluI	GCNGC	7 cut(s)	6, 9, 12, 213, 276, 391, 524
GsaI	CCCAGC	2 cut(s)	32, 414
GsuI	CTGGAG	1 cut(s)	690
HaeIII	GGCC	4 cut(s)	5, 47, 84, 113
HapII	CCGG	4 cut(s)	35, 41, 365, 458
HgaI	GACGC	2 cut(s)	302, 407
Hin1I	GRCGYC	4 cut(s)	57, 126, 294, 399
Hin1II	CATG	1 cut(s)	695
HpaII	CCGG	4 cut(s)	35, 41, 365, 458
HphI	GGTGA	4 cut(s)	217, 241, 407, 562
Hpy188I	TCNGA	1 cut(s)	383
Hpy188III	TCNNGA	4 cut(s)	344, 430, 565, 692
Hpy99I	CGWCG	5 cut(s)	59, 128, 296, 362, 410
HpyAV	CCTTC	3 cut(s)	247, 256, 499
HpyCH4III	ACNGT	2 cut(s)	253, 406
HpyCH4IV	ACGT	2 cut(s)	57, 126
HpyCH4V	TGCA	2 cut(s)	643, 660
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 200, 209, 407, 545, 683
HpyF3I	CTNAG	1 cut(s)	633
HpySE526I	ACGT	2 cut(s)	57, 126
Hsp92I	GRCGYC	4 cut(s)	57, 126, 294, 399
Hsp92II	CATG	1 cut(s)	695
Kzo9I	GATC	1 cut(s)	383
LguI	GCTCTTC	1 cut(s)	684
LmnI	GCTCC	3 cut(s)	74, 194, 308
Lsp1109I	GCAGC	1 cut(s)	510
LweI	GCATC	1 cut(s)	664
MaeII	ACGT	2 cut(s)	57, 126
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	1 cut(s)	385
MbiI	CCGCTC	1 cut(s)	355
MboI	GATC	1 cut(s)	383
MboII	GAAGA	7 cut(s)	85, 157, 214, 247, 370, 565, 671
MmeI	TCCRAC	1 cut(s)	330
MseI	TTAA	1 cut(s)	609
MslI	CAYNNNNRTG	1 cut(s)	77
MspA1I	CMGCKG	2 cut(s)	390, 533
MspI	CCGG	4 cut(s)	35, 41, 365, 458
MspR9I	CCNGG	5 cut(s)	35, 41, 110, 365, 459
Mva1269I	GAATGC	1 cut(s)	607
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	6 cut(s)	11, 200, 209, 407, 545, 683
NciI	CCSGG	4 cut(s)	35, 41, 365, 459
NdeII	GATC	1 cut(s)	383
NlaIII	CATG	1 cut(s)	695
NlaIV	GGNNCC	3 cut(s)	39, 48, 70
NmuCI	GTSAC	1 cut(s)	395
NspV	TTCGAA	1 cut(s)	168
PagI	TCATGA	1 cut(s)	691
PciSI	GCTCTTC	1 cut(s)	684
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 414
PctI	GAATGC	1 cut(s)	607
PfoI	TCCNGGA	1 cut(s)	39
PkrI	GCNGC	7 cut(s)	7, 10, 13, 214, 277, 392, 525
Psp6I	CCWGG	1 cut(s)	108
PspFI	CCCAGC	2 cut(s)	28, 410
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	3 cut(s)	39, 48, 70
PspPI	GGNCC	4 cut(s)	37, 46, 82, 112
RseI	CAYNNNNRTG	1 cut(s)	77
SapI	GCTCTTC	1 cut(s)	684
SaqAI	TTAA	1 cut(s)	609
SatI	GCNGC	7 cut(s)	6, 9, 12, 213, 276, 391, 524
Sau3AI	GATC	1 cut(s)	383
Sau96I	GGNCC	4 cut(s)	37, 46, 82, 112
ScrFI	CCNGG	5 cut(s)	35, 41, 110, 365, 459
SetI	ASST	7 cut(s)	19, 60, 129, 147, 230, 305, 351
SfaNI	GCATC	1 cut(s)	664
SfcI	CTRYAG	1 cut(s)	496
SfuI	TTCGAA	1 cut(s)	168
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	77
StyD4I	CCNGG	5 cut(s)	33, 39, 108, 363, 457
TaaI	ACNGT	2 cut(s)	253, 406
TaiI	ACGT	2 cut(s)	60, 129
TaqI	TCGA	5 cut(s)	54, 168, 264, 345, 357
TauI	GCSGC	6 cut(s)	8, 11, 14, 215, 278, 393
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	1 cut(s)	523
Tsp45I	GTSAC	1 cut(s)	395
TspGWI	ACGGA	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	37
ZraI	GACGTC	2 cut(s)	58, 127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.