Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0012113

Physical Location & Seq

Genomic Coordinates Reverse (-)

56505287 .. 56505910

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG292300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGGCTACCCTCTCTTCACCCGTATCCGCCTGGCCCACCCCACCGACGTCCCCCACATCCACAAGCTCATCCACCAGATGTCCGTCTTCGAACGCCTCGCCGACCAATGCTCCGCCACCGAAGCCTCCCTGGCCGCCACTCTCTTCACCTCCCCTCCCTTCAAGTCCTTCACCGTCTTCCTCCTCGAAGTCTCCTCCGCCCCTTTCCCCAACGACGCTCATAGCTCCAACCAGTTCTACCACCCCACCGTCAAAACCCTCAATCTCGACCTCCCGATCGACGACCCGGAGAGCCATGTCTTCCGATCCAGCGGCGGTGACGCCACCGTCGCTGGGTTTGTGCTGTTTTTCCCGAACTATTCTACTTTTCTCGCCAAGCCGGGGTTTTATGTGGAGGACTTGTTTGTGAGGGAGTGCTACAGGAGGAAGGGGATGGGGAAAATGCTGCTTTCGGCGGTGGCCAAGCAGGCGGTGAAGATGGGGTTCGGGAGAGTGGAGTGGGTTGTGCTGGATTGGAATGTGAATGCGATTAAGTTTTATGAGGAAATGGGGGCTAAGATTATGCAGGAGTGGAGGATTTGCAGGCTCACTGGGGATGCTCTTCAGGCTTATCATGATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006591 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

207

Amino Acids

23.4

Weight (kDa)

6.7

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	90 - 184	3.6e-16	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	109 - 184	1.9e-08	Acetyltransferase (GNAT) domain
Acetyltransf_10	PF13673	112 - 184	1.1e-06	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39020 AT2G39030
fragaria_vesca	FvH4_7g19050
malus_domestica	MD01G1105800.v1.1
prunus_persica	Prupe.2G211200_v2.0.a1 Prupe.2G211200_v2.0.a1 Prupe.2G211200_v2.0.a1
pyrus_communis	pycom01g13260
rosa_chinensis	RchiOBHm_Chr1g0362951
rosa_laevigata	RLG00000027608
rosa_multiflora	Rmu_sc0000174.1_g000011 Rmu_sc0012461.1_g000003
rosa_roxburghii	Rroxscaffold_4G00293610
rosa_rugosa	Rorug01G0302300
rosa_samantha	Rh1AG312000 Rh1BG275000 Rh1CG292300 Rh1DG305700
rosa_wichuraiana	Rw1G027640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	326
AatII	GACGTC	1 cut(s)	51
AciI	CCGC	8 cut(s)	28, 114, 135, 198, 312, 315, 455, 470
AclWI	GGATC	1 cut(s)	300
AcoI	YGGCCR	2 cut(s)	132, 459
AcuI	CTGAAG	1 cut(s)	587
AcyI	GRCGYC	2 cut(s)	48, 321
AfiI	CCNNNNNNNGG	2 cut(s)	333, 381
AgsI	TTSAA	1 cut(s)	163
AjnI	CCWGG	2 cut(s)	30, 129
AluBI	AGCT	2 cut(s)	67, 225
AluI	AGCT	2 cut(s)	67, 225
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	1 cut(s)	300
AoxI	GGCC	3 cut(s)	33, 132, 459
ApeKI	GCWGC	1 cut(s)	445
AspS9I	GGNCC	1 cut(s)	34
AsuC2I	CCSGG	2 cut(s)	287, 381
AsuHPI	GGTGA	5 cut(s)	10, 139, 163, 329, 484
AsuII	TTCGAA	1 cut(s)	90
BalI	TGGCCA	1 cut(s)	461
BbsI	GAAGAC	3 cut(s)	79, 169, 292
BbvI	GCAGC	1 cut(s)	432
BccI	CCATC	2 cut(s)	427, 472
BciT130I	CCWGG	2 cut(s)	32, 131
BciVI	GTATCC	1 cut(s)	35
BcnI	CCSGG	2 cut(s)	287, 381
BcoDI	GTCTC	1 cut(s)	196
BfmI	CTRYAG	1 cut(s)	418
BfuI	GTATCC	1 cut(s)	35
BglI	GCCNNNNNGGC	2 cut(s)	131, 467
BisI	GCNGC	3 cut(s)	135, 313, 446
BlsI	GCNGC	3 cut(s)	136, 314, 447
Bme1390I	CCNGG	4 cut(s)	32, 131, 287, 381
BmgT120I	GGNCC	1 cut(s)	34
BmrFI	CCNGG	4 cut(s)	32, 131, 287, 381
BmrI	ACTGGG	1 cut(s)	600
BmsI	GCATC	2 cut(s)	586, 607
BmuI	ACTGGG	1 cut(s)	600
BpiI	GAAGAC	3 cut(s)	79, 169, 292
Bpu14I	TTCGAA	1 cut(s)	90
BpuMI	CCSGG	2 cut(s)	287, 381
BsaHI	GRCGYC	2 cut(s)	48, 321
BsaJI	CCNNGG	2 cut(s)	129, 380
BsaXI	ACNNNNNCTCC	6 cut(s)	95, 125, 139, 169, 386, 416
Bsc4I	CCNNNNNNNGG	2 cut(s)	333, 381
Bse1I	ACTGG	2 cut(s)	232, 595
BseBI	CCWGG	2 cut(s)	32, 131
BseDI	CCNNGG	2 cut(s)	129, 380
BseGI	GGATG	4 cut(s)	57, 69, 438, 601
BseLI	CCNNNNNNNGG	2 cut(s)	333, 381
BseNI	ACTGG	2 cut(s)	232, 595
BseRI	GAGGAG	2 cut(s)	173, 184
BseXI	GCAGC	1 cut(s)	432
BseYI	CCCAGC	1 cut(s)	332
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	3 cut(s)	35, 134, 461
BsiEI	CGRYCG	1 cut(s)	279
BsiSI	CCGG	2 cut(s)	287, 380
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	333, 381
BsmAI	GTCTC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	529
BsnI	GGCC	3 cut(s)	35, 134, 461
Bsp119I	TTCGAA	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	276, 305
BspACI	CCGC	8 cut(s)	28, 114, 135, 198, 312, 315, 455, 470
BspANI	GGCC	3 cut(s)	35, 134, 461
BspHI	TCATGA	1 cut(s)	613
BspPI	GGATC	1 cut(s)	300
BspQI	GCTCTTC	1 cut(s)	606
BspT104I	TTCGAA	1 cut(s)	90
BsrI	ACTGG	2 cut(s)	232, 595
BssECI	CCNNGG	2 cut(s)	129, 380
BssMI	GATC	2 cut(s)	276, 305
BssNI	GRCGYC	2 cut(s)	48, 321
Bst2UI	CCWGG	2 cut(s)	32, 131
Bst4CI	ACNGT	3 cut(s)	175, 250, 328
Bst6I	CTCTTC	3 cut(s)	20, 149, 606
BstACI	GRCGYC	2 cut(s)	48, 321
BstBI	TTCGAA	1 cut(s)	90
BstC8I	GCNNGC	2 cut(s)	468, 584
BstDEI	CTNAG	1 cut(s)	555
BstF5I	GGATG	4 cut(s)	57, 69, 438, 601
BstKTI	GATC	2 cut(s)	279, 308
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	2 cut(s)	276, 305
BstMCI	CGRYCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 131, 329, 467, 605
BstNI	CCWGG	2 cut(s)	32, 131
BstSCI	CCNGG	4 cut(s)	30, 129, 285, 379
BstSFI	CTRYAG	1 cut(s)	418
BstV1I	GCAGC	1 cut(s)	432
BstV2I	GAAGAC	3 cut(s)	79, 169, 292
BsuI	GTATCC	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	35, 134, 461
BtsCI	GGATG	4 cut(s)	57, 69, 438, 601
BtsIMutI	CAGTG	1 cut(s)	588
Cac8I	GCNNGC	2 cut(s)	468, 584
CciI	TCATGA	1 cut(s)	613
Cfr13I	GGNCC	1 cut(s)	34
CseI	GACGC	2 cut(s)	224, 329
CviAII	CATG	2 cut(s)	296, 614
DdeI	CTNAG	1 cut(s)	555
DpnI	GATC	2 cut(s)	278, 307
DpnII	GATC	2 cut(s)	276, 305
DrdI	GACNNNNNNGTC	1 cut(s)	326
DseDI	GACNNNNNNGTC	1 cut(s)	326
EaeI	YGGCCR	2 cut(s)	132, 459
Eam1104I	CTCTTC	3 cut(s)	20, 149, 606
EarI	CTCTTC	3 cut(s)	20, 149, 606
EciI	GGCGGA	3 cut(s)	17, 103, 187
Eco57I	CTGAAG	1 cut(s)	587
EcoRII	CCWGG	2 cut(s)	30, 129
EcoT22I	ATGCAT	1 cut(s)	622
FaeI	CATG	2 cut(s)	299, 617
FaiI	YATR	7 cut(s)	222, 297, 390, 540, 563, 615, 622
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	2 cut(s)	295, 613
Fnu4HI	GCNGC	3 cut(s)	135, 313, 446
FokI	GGATG	4 cut(s)	44, 56, 445, 608
Fsp4HI	GCNGC	3 cut(s)	135, 313, 446
GluI	GCNGC	3 cut(s)	135, 313, 446
GsaI	CCCAGC	1 cut(s)	336
HaeIII	GGCC	3 cut(s)	35, 134, 461
HapII	CCGG	2 cut(s)	287, 380
HgaI	GACGC	2 cut(s)	224, 329
Hin1I	GRCGYC	2 cut(s)	48, 321
Hin1II	CATG	2 cut(s)	299, 617
HpaII	CCGG	2 cut(s)	287, 380
HphI	GGTGA	5 cut(s)	10, 139, 163, 329, 484
Hpy188I	TCNGA	1 cut(s)	305
Hpy188III	TCNNGA	5 cut(s)	266, 274, 352, 487, 614
Hpy99I	CGWCG	4 cut(s)	50, 218, 284, 332
HpyAV	CCTTC	3 cut(s)	169, 178, 421
HpyCH4III	ACNGT	3 cut(s)	175, 250, 328
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	3 cut(s)	565, 582, 620
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 131, 329, 467, 605
HpyF3I	CTNAG	1 cut(s)	555
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	2 cut(s)	48, 321
Hsp92II	CATG	2 cut(s)	299, 617
Kzo9I	GATC	2 cut(s)	276, 305
LguI	GCTCTTC	1 cut(s)	606
LmnI	GCTCC	2 cut(s)	116, 230
Lsp1109I	GCAGC	1 cut(s)	432
LweI	GCATC	2 cut(s)	586, 607
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	2 cut(s)	278, 307
MboI	GATC	2 cut(s)	276, 305
MboII	GAAGA	7 cut(s)	7, 79, 136, 169, 292, 487, 593
MlsI	TGGCCA	1 cut(s)	461
MluNI	TGGCCA	1 cut(s)	461
MmeI	TCCRAC	1 cut(s)	252
Mox20I	TGGCCA	1 cut(s)	461
Mph1103I	ATGCAT	1 cut(s)	622
MscI	TGGCCA	1 cut(s)	461
MseI	TTAA	1 cut(s)	531
Msp20I	TGGCCA	1 cut(s)	461
MspA1I	CMGCKG	1 cut(s)	312
MspI	CCGG	2 cut(s)	287, 380
MspR9I	CCNGG	4 cut(s)	32, 131, 287, 381
Mva1269I	GAATGC	1 cut(s)	529
MvaI	CCWGG	2 cut(s)	32, 131
MwoI	GCNNNNNNNGC	5 cut(s)	122, 131, 329, 467, 605
NciI	CCSGG	2 cut(s)	287, 381
NdeII	GATC	2 cut(s)	276, 305
NlaIII	CATG	2 cut(s)	299, 617
NmuCI	GTSAC	1 cut(s)	317
NsiI	ATGCAT	1 cut(s)	622
NspV	TTCGAA	1 cut(s)	90
PagI	TCATGA	1 cut(s)	613
PciSI	GCTCTTC	1 cut(s)	606
PctI	GAATGC	1 cut(s)	529
PkrI	GCNGC	3 cut(s)	136, 314, 447
Ple19I	CGATCG	1 cut(s)	279
Psp6I	CCWGG	2 cut(s)	30, 129
PspFI	CCCAGC	1 cut(s)	332
PspGI	CCWGG	2 cut(s)	30, 129
PspPI	GGNCC	1 cut(s)	34
PvuI	CGATCG	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	606
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	3 cut(s)	135, 313, 446
Sau3AI	GATC	2 cut(s)	276, 305
Sau96I	GGNCC	1 cut(s)	34
ScrFI	CCNGG	4 cut(s)	32, 131, 287, 381
SetI	ASST	5 cut(s)	51, 69, 152, 227, 273
SfaNI	GCATC	2 cut(s)	586, 607
SfcI	CTRYAG	1 cut(s)	418
SfuI	TTCGAA	1 cut(s)	90
SsiI	CCGC	8 cut(s)	28, 114, 135, 198, 312, 315, 455, 470
StyD4I	CCNGG	4 cut(s)	30, 129, 285, 379
TaaI	ACNGT	3 cut(s)	175, 250, 328
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	4 cut(s)	90, 186, 267, 279
TauI	GCSGC	2 cut(s)	137, 315
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TscAI	CASTG	1 cut(s)	595
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	1 cut(s)	445
Tsp45I	GTSAC	1 cut(s)	317
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	595
ZraI	GACGTC	1 cut(s)	49
Zsp2I	ATGCAT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.