Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012113

Physical Location & Seq

Genomic Coordinates Forward (+)

16298110 .. 16299205

Gene Structure 1096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCGCCTCCAACCGCAGCACCAGAGCCAAACACTGTGCCAGAGACTTCACCGACCGGCCACCGTATGTTTTCCCGGATCCGCCTCGCTACGCCGACCGATGTCCCTTTCATTCACAAGCTAATCCACCAGATGGCGGTTTTTGAGCGCCTCACGCATCTCTTTGTCGCCACCGAGTCTGGTCTTGCCTCCACGCTCTTCAACTCCCGTCCGTTCCAAGCCGTCACCGTCTTCCTCTTGGAAATCTCCCCTTCCCCATTTCCCACCACTCATGACGCTTCGTCCCCTGATTTCACCCCCTTTCTTGAGACGCATAAGGTTGATCTCCCTATCGAGGATCCGGACAGAGAAAAGTTCTTGCCGGATAAGCTCAACGACGTGGTGGTGGCTGGATTCGTTCTGTTCTTCCCGAACTACCCAAGTTTTCTAGCGAAACAGGGTTTCTACATCGAGGATATCTTCATGAGAGAACCTTACAGACGAAAAGGCTTCGGAAAACTGCTACTGACCGCTGTGGCAAAGCAAGCAGTGAAGTTGGGTGTCGGAAGAGTGGAGTGGATTGTGATCGATTGGAATGTGAATGCTATCAACTTCTATGAGCAGATGGGTGCGCAGGTTTTTAAGGAATGGAGACTTTGTAGGCTCACTGGCGATGCACTTCAAGCTATTGACAAGCTAAACATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006591 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

228

Amino Acids

25.82

Weight (kDa)

6.31

Isoelectric Point (pI)

48.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	91 - 203	5.8e-18	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	129 - 203	2.5e-07	Acetyltransferase (GNAT) domain
Acetyltransf_10	PF13673	145 - 203	4.1e-06	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39020 AT2G39030
fragaria_vesca	FvH4_7g19050
malus_domestica	MD01G1105800.v1.1
prunus_persica	Prupe.2G211200_v2.0.a1 Prupe.2G211200_v2.0.a1 Prupe.2G211200_v2.0.a1
pyrus_communis	pycom01g13260
rosa_chinensis	RchiOBHm_Chr1g0362951
rosa_laevigata	RLG00000027608
rosa_multiflora	Rmu_sc0000174.1_g000011 Rmu_sc0012461.1_g000003
rosa_roxburghii	Rroxscaffold_4G00293610
rosa_rugosa	Rorug01G0302300
rosa_samantha	Rh1AG312000 Rh1BG275000 Rh1CG292300 Rh1DG305700
rosa_wichuraiana	Rw1G027640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	612
Acc36I	ACCTGC	1 cut(s)	604
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	133
AccIII	TCCGGA	1 cut(s)	340
AciI	CCGC	4 cut(s)	15, 82, 137, 510
AclWI	GGATC	4 cut(s)	73, 86, 332, 345
AcoI	YGGCCR	1 cut(s)	58
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	133, 136, 334
AgsI	TTSAA	2 cut(s)	202, 662
AhdI	GACNNNNNGTC	1 cut(s)	280
AjiI	CACGTC	1 cut(s)	379
AluBI	AGCT	4 cut(s)	121, 370, 665, 676
AluI	AGCT	4 cut(s)	121, 370, 665, 676
Alw26I	GTCTC	3 cut(s)	38, 302, 625
AlwI	GGATC	4 cut(s)	73, 86, 332, 345
Aor13HI	TCCGGA	1 cut(s)	340
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	17
AspLEI	GCGC	3 cut(s)	7, 150, 613
AsuC2I	CCSGG	1 cut(s)	76
AsuHPI	GGTGA	3 cut(s)	42, 217, 286
BamHI	GGATCC	2 cut(s)	78, 337
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	2 cut(s)	127, 598
BceAI	ACGGC	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	76
BcoDI	GTCTC	3 cut(s)	38, 302, 625
BfaI	CTAG	2 cut(s)	428, 685
BfoI	RGCGCY	2 cut(s)	8, 151
BfuAI	ACCTGC	1 cut(s)	604
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	76
BmeRI	GACNNNNNGTC	1 cut(s)	280
BmgBI	CACGTC	1 cut(s)	379
BmiI	GGNNCC	3 cut(s)	6, 80, 339
BmrFI	CCNGG	1 cut(s)	76
BmsI	GCATC	2 cut(s)	166, 643
BoxI	GACNNNNGTC	1 cut(s)	101
BpiI	GAAGAC	1 cut(s)	223
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	76
Bsa29I	ATCGAT	1 cut(s)	567
BsaBI	GATNNNNATC	1 cut(s)	563
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	340
BsaXI	ACNNNNNCTCC	2 cut(s)	622, 652
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 136, 334
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	652
Bse8I	GATNNNNATC	1 cut(s)	563
BseAI	TCCGGA	1 cut(s)	340
BseCI	ATCGAT	1 cut(s)	567
BseJI	GATNNNNATC	1 cut(s)	563
BseLI	CCNNNNNNNGG	3 cut(s)	133, 136, 334
BseNI	ACTGG	1 cut(s)	652
BseXI	GCAGC	1 cut(s)	29
Bsh1285I	CGRYCG	2 cut(s)	57, 99
BshFI	GGCC	1 cut(s)	60
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	1 cut(s)	567
BsiEI	CGRYCG	2 cut(s)	57, 99
BsiSI	CCGG	4 cut(s)	57, 76, 341, 362
BslFI	GGGAC	2 cut(s)	89, 268
BslI	CCNNNNNNNGG	3 cut(s)	133, 136, 334
BsmAI	GTCTC	3 cut(s)	38, 302, 625
BsmBI	CGTCTC	1 cut(s)	302
BsmFI	GGGAC	2 cut(s)	89, 268
BsmI	GAATGC	1 cut(s)	586
BsnI	GGCC	1 cut(s)	60
Bsp13I	TCCGGA	1 cut(s)	340
Bsp143I	GATC	4 cut(s)	78, 322, 337, 564
BspACI	CCGC	4 cut(s)	15, 82, 137, 510
BspANI	GGCC	1 cut(s)	60
BspDI	ATCGAT	1 cut(s)	567
BspEI	TCCGGA	1 cut(s)	340
BspHI	TCATGA	2 cut(s)	271, 462
BspLI	GGNNCC	3 cut(s)	6, 80, 339
BspMI	ACCTGC	1 cut(s)	604
BspPI	GGATC	4 cut(s)	73, 86, 332, 345
BspQI	GCTCTTC	1 cut(s)	203
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	652
BssAI	RCCGGY	1 cut(s)	56
BssMI	GATC	4 cut(s)	78, 322, 337, 564
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	3 cut(s)	37, 65, 229
Bst6I	CTCTTC	2 cut(s)	203, 541
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	525
BstH2I	RGCGCY	2 cut(s)	8, 151
BstHHI	GCGC	3 cut(s)	7, 150, 613
BstKTI	GATC	4 cut(s)	81, 325, 340, 567
BstMAI	GTCTC	3 cut(s)	38, 302, 625
BstMBI	GATC	4 cut(s)	78, 322, 337, 564
BstMCI	CGRYCG	2 cut(s)	57, 99
BstMWI	GCNNNNNNNGC	4 cut(s)	154, 367, 524, 662
BstPAI	GACNNNNGTC	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	29
BstV2I	GAAGAC	1 cut(s)	223
BstX2I	RGATCY	2 cut(s)	78, 337
BstYI	RGATCY	2 cut(s)	78, 337
Bsu15I	ATCGAT	1 cut(s)	567
BsuRI	GGCC	1 cut(s)	60
BsuTUI	ATCGAT	1 cut(s)	567
BtgZI	GCGATG	1 cut(s)	666
BtrI	CACGTC	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	3 cut(s)	33, 534, 645
BveI	ACCTGC	1 cut(s)	604
Cac8I	GCNNGC	1 cut(s)	525
CciI	TCATGA	2 cut(s)	271, 462
CfoI	GCGC	3 cut(s)	7, 150, 613
Cfr10I	RCCGGY	1 cut(s)	56
ClaI	ATCGAT	1 cut(s)	567
CseI	GACGC	2 cut(s)	284, 319
CviAII	CATG	2 cut(s)	272, 463
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	4 cut(s)	80, 324, 339, 566
DpnII	GATC	4 cut(s)	78, 322, 337, 564
DriI	GACNNNNNGTC	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	58
Eam1104I	CTCTTC	2 cut(s)	203, 541
Eam1105I	GACNNNNNGTC	1 cut(s)	280
EarI	CTCTTC	2 cut(s)	203, 541
EciI	GGCGGA	1 cut(s)	71
Eco32I	GATATC	1 cut(s)	457
EcoRV	GATATC	1 cut(s)	457
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	302
FaeI	CATG	2 cut(s)	275, 466
FaiI	YATR	5 cut(s)	68, 273, 315, 464, 597
FaqI	GGGAC	2 cut(s)	89, 268
FatI	CATG	2 cut(s)	271, 462
Fnu4HI	GCNGC	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	2 cut(s)	428, 685
FspI	TGCGCA	1 cut(s)	612
GlaI	GCGC	3 cut(s)	6, 149, 612
GluI	GCNGC	1 cut(s)	18
HaeII	RGCGCY	2 cut(s)	8, 151
HaeIII	GGCC	1 cut(s)	60
HapII	CCGG	4 cut(s)	57, 76, 341, 362
HgaI	GACGC	2 cut(s)	284, 319
HhaI	GCGC	3 cut(s)	7, 150, 613
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	275, 466
Hin6I	GCGC	3 cut(s)	5, 148, 611
HinP1I	GCGC	3 cut(s)	5, 148, 611
HinfI	GANTC	2 cut(s)	176, 393
HpaII	CCGG	4 cut(s)	57, 76, 341, 362
HphI	GGTGA	3 cut(s)	42, 217, 286
Hpy188I	TCNGA	2 cut(s)	494, 545
Hpy188III	TCNNGA	5 cut(s)	272, 305, 341, 409, 463
Hpy99I	CGWCG	1 cut(s)	380
HpyAV	CCTTC	1 cut(s)	261
HpyCH4III	ACNGT	3 cut(s)	37, 65, 229
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	1 cut(s)	656
HpyF10VI	GCNNNNNNNGC	4 cut(s)	154, 367, 524, 662
HpySE526I	ACGT	1 cut(s)	378
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	275, 466
HspAI	GCGC	3 cut(s)	5, 148, 611
KasI	GGCGCC	1 cut(s)	4
Kpn2I	TCCGGA	1 cut(s)	340
Kzo9I	GATC	4 cut(s)	78, 322, 337, 564
LguI	GCTCTTC	1 cut(s)	203
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	2 cut(s)	166, 643
MaeI	CTAG	2 cut(s)	428, 685
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	4 cut(s)	80, 324, 339, 566
MboI	GATC	4 cut(s)	78, 322, 337, 564
MboII	GAAGA	5 cut(s)	190, 223, 397, 451, 558
MflI	RGATCY	2 cut(s)	78, 337
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	2 cut(s)	35, 523
MnlI	CCTC	7 cut(s)	18, 95, 161, 199, 245, 328, 445
MroI	TCCGGA	1 cut(s)	340
MseI	TTAA	1 cut(s)	621
MspA1I	CMGCKG	1 cut(s)	512
MspI	CCGG	4 cut(s)	57, 76, 341, 362
MspR9I	CCNGG	1 cut(s)	76
Mva1269I	GAATGC	1 cut(s)	586
MwoI	GCNNNNNNNGC	4 cut(s)	154, 367, 524, 662
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	76
NdeII	GATC	4 cut(s)	78, 322, 337, 564
NlaIII	CATG	2 cut(s)	275, 466
NlaIV	GGNNCC	3 cut(s)	6, 80, 339
NmuCI	GTSAC	1 cut(s)	223
NsbI	TGCGCA	1 cut(s)	612
PagI	TCATGA	2 cut(s)	271, 462
PciSI	GCTCTTC	1 cut(s)	203
PctI	GAATGC	1 cut(s)	586
PfeI	GAWTC	1 cut(s)	393
PflMI	CCANNNNNTGG	1 cut(s)	133
PfoI	TCCNGGA	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	19
PleI	GAGTC	1 cut(s)	184
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	184
PshAI	GACNNNNGTC	1 cut(s)	101
PspN4I	GGNNCC	3 cut(s)	6, 80, 339
PsuI	RGATCY	2 cut(s)	78, 337
SapI	GCTCTTC	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	621
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	4 cut(s)	78, 322, 337, 564
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	76
SetI	ASST	8 cut(s)	123, 321, 372, 381, 475, 618, 667, 678
SfaNI	GCATC	2 cut(s)	166, 643
SfoI	GGCGCC	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
SsiI	CCGC	4 cut(s)	15, 82, 137, 510
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	428, 685
StyD4I	CCNGG	1 cut(s)	74
TaaI	ACNGT	3 cut(s)	37, 65, 229
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	3 cut(s)	333, 450, 567
TaqII	GACCGA	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	393
Tru1I	TTAA	1 cut(s)	621
Tru9I	TTAA	1 cut(s)	621
TscAI	CASTG	3 cut(s)	40, 534, 652
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	100, 451
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	3 cut(s)	40, 534, 652
Van91I	CCANNNNNTGG	1 cut(s)	133
XspI	CTAG	2 cut(s)	428, 685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.