Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0012113

Physical Location & Seq

Genomic Coordinates Reverse (-)

15814479 .. 15815183

Gene Structure 705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g19050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCCGCCGCCGCACCTCCACCGCCCCCAACCCCCGCCCCGGAGACTCCGATCGACCTCCCGAGAGGCTCCACCACCCCAATGGGCCACCCACTCTTCGCCCGCGTCCGCCTGGCCCAGCCCACCGACGTCCCCCACATCTACAAGCTCATCCACCAGATGGCCGTCTTCGAGCGCCTCTCCGACCACTGCTCCGCCACCGAAGCCTCCCTCGCCTCCACTCTCTTCAACTCCCCTCCTTTCCAGTCCTTCACCGTCTTCGTCCTCGAAGCCTCCCCCACCCCTTTCCCCAACGACGCCCACTACTCCAATCCCCACTACCAACCTGTTGTCAAAACCCTCAATCTCGACCTCCCTGTTGAAGACCCCGAGAGGCTCGTGTTCTGGTCCGGCGTTGGCGACGCTGTGGTTGCCGGGTTCGTGTTGTTTTTTCCGAATTACTCGACGTTTCTCGGCAAGCCCGGGTTTTATGTGGAGGATTTGTTTGTGAGGGAGTGCTACAGGAGGAAGGGGATGGGGAAGATGCTGCTTTCGGCTGTGGCGAAGCAGGCGGTGAAGATGGGGTATGGGAGAGTGGAGTGGGTTGTGCTGGATTGGAATGTGAATGCGATTAATTTTTATGAGGAAATGGGGGCTAAGATTATGCAGGAGTGGAGGATTTGCAGGCTTACTGGGGATGCTCTTCAGGCGTATCAGGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006591 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

235

Amino Acids

26.11

Weight (kDa)

5.85

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	120 - 211	5.4e-16	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	135 - 211	8.9e-09	Acetyltransferase (GNAT) domain
Acetyltransf_10	PF13673	153 - 211	9e-07	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39020 AT2G39030
fragaria_vesca	FvH4_7g19050
malus_domestica	MD01G1105800.v1.1
prunus_persica	Prupe.2G211200_v2.0.a1 Prupe.2G211200_v2.0.a1 Prupe.2G211200_v2.0.a1
pyrus_communis	pycom01g13260
rosa_chinensis	RchiOBHm_Chr1g0362951
rosa_laevigata	RLG00000027608
rosa_multiflora	Rmu_sc0000174.1_g000011 Rmu_sc0012461.1_g000003
rosa_roxburghii	Rroxscaffold_4G00293610
rosa_rugosa	Rorug01G0302300
rosa_samantha	Rh1AG312000 Rh1BG275000 Rh1CG292300 Rh1DG305700
rosa_wichuraiana	Rw1G027640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	132
AccB7I	CCANNNNNTGG	1 cut(s)	160
AccII	CGCG	1 cut(s)	105
AciI	CCGC	9 cut(s)	6, 9, 12, 23, 36, 103, 109, 195, 551
AcoI	YGGCCR	2 cut(s)	3, 162
AcuI	CTGAAG	1 cut(s)	668
AcyI	GRCGYC	2 cut(s)	129, 297
AfiI	CCNNNNNNNGG	2 cut(s)	40, 160
AgsI	TTSAA	2 cut(s)	229, 362
AjnI	CCWGG	1 cut(s)	111
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	38
Ama87I	CYCGRG	3 cut(s)	61, 368, 461
AoxI	GGCC	4 cut(s)	3, 85, 114, 162
ApeKI	GCWGC	1 cut(s)	526
AseI	ATTAAT	1 cut(s)	612
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	3 cut(s)	85, 115, 387
AsuC2I	CCSGG	4 cut(s)	41, 415, 462, 463
AsuHPI	GGTGA	2 cut(s)	244, 565
AvaI	CYCGRG	3 cut(s)	61, 368, 461
AvaII	GGWCC	1 cut(s)	387
BauI	CACGAG	1 cut(s)	377
BbsI	GAAGAC	3 cut(s)	160, 250, 369
BbvI	GCAGC	1 cut(s)	513
BccI	CCATC	3 cut(s)	154, 508, 553
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	113
BcnI	CCSGG	4 cut(s)	41, 415, 462, 463
BcoDI	GTCTC	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	499
BfoI	RGCGCY	1 cut(s)	178
BisI	GCNGC	4 cut(s)	6, 9, 12, 527
BlsI	GCNGC	4 cut(s)	7, 10, 13, 528
Bme1390I	CCNGG	5 cut(s)	41, 113, 415, 462, 463
Bme18I	GGWCC	1 cut(s)	387
BmeT110I	CYCGRG	3 cut(s)	61, 368, 461
BmgT120I	GGNCC	3 cut(s)	85, 115, 387
BmiI	GGNNCC	1 cut(s)	70
BmrFI	CCNGG	5 cut(s)	41, 113, 415, 462, 463
BmrI	ACTGGG	1 cut(s)	681
BmsI	GCATC	3 cut(s)	513, 667, 688
BmuI	ACTGGG	1 cut(s)	681
BpiI	GAAGAC	3 cut(s)	160, 250, 369
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BpuMI	CCSGG	4 cut(s)	41, 415, 462, 463
BsaHI	GRCGYC	2 cut(s)	129, 297
BsaJI	CCNNGG	2 cut(s)	39, 461
BsaXI	ACNNNNNCTCC	4 cut(s)	176, 206, 467, 497
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 160
Bse1I	ACTGG	2 cut(s)	244, 676
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	2 cut(s)	39, 461
BseGI	GGATG	4 cut(s)	150, 519, 682, 703
BseLI	CCNNNNNNNGG	2 cut(s)	40, 160
BseNI	ACTGG	2 cut(s)	244, 676
BseXI	GCAGC	1 cut(s)	513
BseYI	CCCAGC	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	105
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	4 cut(s)	5, 87, 116, 164
BsiEI	CGRYCG	1 cut(s)	54
BsiHKCI	CYCGRG	3 cut(s)	61, 368, 461
BsiSI	CCGG	4 cut(s)	41, 390, 414, 462
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	2 cut(s)	40, 160
BsmAI	GTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	610
BsnI	GGCC	4 cut(s)	5, 87, 116, 164
BsoBI	CYCGRG	3 cut(s)	61, 368, 461
Bsp143I	GATC	1 cut(s)	51
BspACI	CCGC	9 cut(s)	6, 9, 12, 23, 36, 103, 109, 195, 551
BspANI	GGCC	4 cut(s)	5, 87, 116, 164
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	70
BspQI	GCTCTTC	1 cut(s)	687
BsrI	ACTGG	2 cut(s)	244, 676
BssECI	CCNNGG	2 cut(s)	39, 461
BssMI	GATC	1 cut(s)	51
BssNI	GRCGYC	2 cut(s)	129, 297
BssSI	CACGAG	1 cut(s)	377
Bst2BI	CACGAG	1 cut(s)	377
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	256
Bst6I	CTCTTC	3 cut(s)	101, 230, 687
BstACI	GRCGYC	2 cut(s)	129, 297
BstC8I	GCNNGC	4 cut(s)	103, 458, 549, 665
BstDEI	CTNAG	2 cut(s)	636, 702
BstF5I	GGATG	4 cut(s)	150, 519, 682, 703
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	1 cut(s)	54
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	1 cut(s)	51
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 203, 212, 410, 548, 686
BstNI	CCWGG	1 cut(s)	113
BstSCI	CCNGG	5 cut(s)	39, 111, 413, 460, 461
BstSFI	CTRYAG	1 cut(s)	499
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	513
BstV2I	GAAGAC	3 cut(s)	160, 250, 369
BstXI	CCANNNNNNTGG	1 cut(s)	82
BsuRI	GGCC	4 cut(s)	5, 87, 116, 164
BtsCI	GGATG	4 cut(s)	150, 519, 682, 703
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	187
Cac8I	GCNNGC	4 cut(s)	103, 458, 549, 665
CfoI	GCGC	1 cut(s)	177
Cfr13I	GGNCC	3 cut(s)	85, 115, 387
Cfr9I	CCCGGG	1 cut(s)	461
CseI	GACGC	3 cut(s)	94, 305, 410
DdeI	CTNAG	2 cut(s)	636, 702
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
EaeI	YGGCCR	2 cut(s)	3, 162
Eam1104I	CTCTTC	3 cut(s)	101, 230, 687
EarI	CTCTTC	3 cut(s)	101, 230, 687
EciI	GGCGGA	2 cut(s)	98, 184
Eco47I	GGWCC	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	668
Eco88I	CYCGRG	3 cut(s)	61, 368, 461
EcoRII	CCWGG	1 cut(s)	111
FaiI	YATR	4 cut(s)	471, 567, 621, 644
FaqI	GGGAC	1 cut(s)	116
FauI	CCCGC	2 cut(s)	43, 110
Fnu4HI	GCNGC	4 cut(s)	6, 9, 12, 527
FokI	GGATG	3 cut(s)	137, 526, 689
Fsp4HI	GCNGC	4 cut(s)	6, 9, 12, 527
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	4 cut(s)	6, 9, 12, 527
GsaI	CCCAGC	1 cut(s)	121
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	4 cut(s)	5, 87, 116, 164
HapII	CCGG	4 cut(s)	41, 390, 414, 462
HgaI	GACGC	3 cut(s)	94, 305, 410
HhaI	GCGC	1 cut(s)	177
Hin1I	GRCGYC	2 cut(s)	129, 297
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	1 cut(s)	46
HpaII	CCGG	4 cut(s)	41, 390, 414, 462
HphI	GGTGA	2 cut(s)	244, 565
Hpy188I	TCNGA	3 cut(s)	51, 184, 435
Hpy188III	TCNNGA	3 cut(s)	61, 347, 695
Hpy99I	CGWCG	4 cut(s)	131, 299, 404, 448
HpyAV	CCTTC	2 cut(s)	259, 502
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	2 cut(s)	129, 446
HpyCH4V	TGCA	2 cut(s)	646, 663
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 203, 212, 410, 548, 686
HpyF3I	CTNAG	2 cut(s)	636, 702
HpySE526I	ACGT	2 cut(s)	129, 446
Hsp92I	GRCGYC	2 cut(s)	129, 297
HspAI	GCGC	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	51
LguI	GCTCTTC	1 cut(s)	687
LmnI	GCTCC	2 cut(s)	74, 197
Lsp1109I	GCAGC	1 cut(s)	513
LweI	GCATC	3 cut(s)	513, 667, 688
MaeII	ACGT	2 cut(s)	129, 446
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	8 cut(s)	88, 160, 217, 250, 374, 532, 568, 674
MluCI	AATT	2 cut(s)	436, 613
MlyI	GAGTC	1 cut(s)	40
MmeI	TCCRAC	1 cut(s)	207
MseI	TTAA	1 cut(s)	612
MslI	CAYNNNNRTG	1 cut(s)	80
MspI	CCGG	4 cut(s)	41, 390, 414, 462
MspR9I	CCNGG	5 cut(s)	41, 113, 415, 462, 463
Mva1269I	GAATGC	1 cut(s)	610
MvaI	CCWGG	1 cut(s)	113
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	6 cut(s)	11, 203, 212, 410, 548, 686
NciI	CCSGG	4 cut(s)	41, 415, 462, 463
NdeII	GATC	1 cut(s)	51
NlaIV	GGNNCC	1 cut(s)	70
NmeAIII	GCCGAG	1 cut(s)	432
PciSI	GCTCTTC	1 cut(s)	687
PcsI	WCGNNNNNNNCGW	1 cut(s)	539
PctI	GAATGC	1 cut(s)	610
PflMI	CCANNNNNTGG	1 cut(s)	160
PkrI	GCNGC	4 cut(s)	7, 10, 13, 528
Ple19I	CGATCG	1 cut(s)	54
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PshBI	ATTAAT	1 cut(s)	612
Psp6I	CCWGG	1 cut(s)	111
PspFI	CCCAGC	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	3 cut(s)	85, 115, 387
PvuI	CGATCG	1 cut(s)	54
RseI	CAYNNNNRTG	1 cut(s)	80
SapI	GCTCTTC	1 cut(s)	687
SaqAI	TTAA	1 cut(s)	612
SatI	GCNGC	4 cut(s)	6, 9, 12, 527
Sau3AI	GATC	1 cut(s)	51
Sau96I	GGNCC	3 cut(s)	85, 115, 387
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	5 cut(s)	41, 113, 415, 462, 463
SetI	ASST	7 cut(s)	19, 60, 132, 150, 328, 354, 449
SfaNI	GCATC	3 cut(s)	513, 667, 688
SfcI	CTRYAG	1 cut(s)	499
SinI	GGWCC	1 cut(s)	387
SmaI	CCCGGG	1 cut(s)	463
SmiMI	CAYNNNNRTG	1 cut(s)	80
Sse9I	AATT	2 cut(s)	436, 613
SsiI	CCGC	9 cut(s)	6, 9, 12, 23, 36, 103, 109, 195, 551
StyD4I	CCNGG	5 cut(s)	39, 111, 413, 460, 461
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	2 cut(s)	132, 449
TaqI	TCGA	5 cut(s)	54, 171, 267, 348, 443
TasI	AATT	2 cut(s)	436, 613
TauI	GCSGC	3 cut(s)	8, 11, 14
Tru1I	TTAA	1 cut(s)	612
Tru9I	TTAA	1 cut(s)	612
TscAI	CASTG	1 cut(s)	194
TseI	GCWGC	1 cut(s)	526
TspMI	CCCGGG	1 cut(s)	461
TspRI	CASTG	1 cut(s)	194
Van91I	CCANNNNNTGG	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	387
VspI	ATTAAT	1 cut(s)	612
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79
XmaI	CCCGGG	1 cut(s)	461
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.