Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007268

Physical Location & Seq

Genomic Coordinates Reverse (-)

16443996 .. 16445408

Gene Structure 1413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCGGCTTATCTAGAGCGATGCGACAGTGTAGAAGAAGATTACATTGATATGGAAGTAACTTCTTTCACAAACCTCGTACGTAAAACTCTGAGCAACAACTACCCTCGAGAGTTCGAGTTCCAAATGTCTCATCTTTGTCCTCTTGAGATAGACAAAACCACTTCCCCTGCGGACGAACTCTTCTACAAAGGCAAGCTTCTCCCTCTTCACTTACCTCCACGTCTCCAAATGGTCCAAAAGATTCTAGAAGATTACACCTTCGACGACGAATTCTACAGCACTCCTTTAGCCACCGGAACGGTTACAACTCCAGTGACGAGCAACACTCCGTTCGAGTCCTGCACCGTCTCTCCGGCAGAGTCTTGCCAAGTGAGTAAAGAGCTTAACCCTGAAGACTACTTCCTAGAATATTCAGATTCATTGGAGGAGGACGATGAGAAGAAGAAATCTTGGACCACGAAACTAAGATTGATGAAGCAGTCAAGTCTCGGAACGAAGATTAAAGCTTCGAGAGCTTATCTAAGATCGTTCTTTGGTAAGACAAGTTGTTCTGATGAGTCATCATGCGCGTCTTCCGCTGCGAGAGTTGCAGACGAAGATTCGGTTTTGAGGTATTCGCGAGTAAAGCCTTTTGGACAGATCAAAACAGAGAGACCTAAAAAACAGAGTAATGGTTCTGTTTCCGGAAGCCATAGGAGATCATTTTCAGTTTCTATGAGGAGGCAAGCTGCCAAGAGTTCTAACAACAAATCATCGAATAGTTTAGGGTTTCGTCCGTTGCAGTTTTTGAAGAGAAGTACGAGTTCGAGTTCTGAAATTGAGAATTCTATCCAAGGAGCTATCTTGCATTGCAAGCAATCACAGCAGCAGAAGCAGAAACAGAAACAGTATAGTACTGTTAACGAGGTCGGATTCTGTTCGTTGTCAGCGTCAAGAATCGCAGCTAGGGATGATCAAGAATGGGCTCAGATGTTTAGGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

328

Amino Acids

37.14

Weight (kDa)

8.31

Isoelectric Point (pI)

63.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39370
fragaria_vesca	FvH4_7g20880
malus_domestica	MD07G1186600.v1.1
prunus_persica	Prupe.2G225400_v2.0.a1
pyrus_communis	pycom07g17790
rosa_chinensis	RchiOBHm_Chr1g0365131 RchiOBHm_Chr7g0221341
rosa_laevigata	RLG00000002159 RLG00000027439
rosa_multiflora	Rmu_sc0000324.1_g000026 Rmu_sc0001688.1_g000007
rosa_roxburghii	Rroxscaffold_2G00105470 Rroxscaffold_3G00238390 Rroxscaffold_4G00291400
rosa_rugosa	Rorug01G0320200
rosa_samantha	Rh1AG328800 Rh1BG290400 Rh1CG307100 Rh1DG322000 Rh2DG256000 Rh7AG341500 Rh7CG359400 Rh7DG340000
rosa_wichuraiana	Rw1G029180 Rw7G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	572, 622
AccIII	TCCGGA	1 cut(s)	686
AciI	CCGC	3 cut(s)	5, 173, 579
AcsI	RAATTY	2 cut(s)	272, 826
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	3 cut(s)	81, 802, 898
AgsI	TTSAA	1 cut(s)	793
AjiI	CACGTC	1 cut(s)	224
AluBI	AGCT	7 cut(s)	199, 385, 509, 518, 731, 842, 947
AluI	AGCT	7 cut(s)	199, 385, 509, 518, 731, 842, 947
Alw26I	GTCTC	5 cut(s)	135, 230, 355, 494, 649
Ama87I	CYCGRG	1 cut(s)	108
Aor13HI	TCCGGA	1 cut(s)	686
ApeKI	GCWGC	4 cut(s)	581, 731, 868, 944
ApoI	RAATTY	2 cut(s)	272, 826
AspLEI	GCGC	1 cut(s)	572
AspS9I	GGNCC	2 cut(s)	235, 456
AvaI	CYCGRG	1 cut(s)	108
AvaII	GGWCC	2 cut(s)	235, 456
BanII	GRGCYC	1 cut(s)	970
BbsI	GAAGAC	2 cut(s)	402, 567
BbvI	GCAGC	4 cut(s)	568, 718, 880, 956
BclI	TGATCA	1 cut(s)	955
BcoDI	GTCTC	5 cut(s)	135, 230, 355, 494, 649
BfaI	CTAG	4 cut(s)	14, 248, 407, 948
BfmI	CTRYAG	1 cut(s)	277
BisI	GCNGC	5 cut(s)	6, 582, 732, 869, 945
BlsI	GCNGC	5 cut(s)	7, 583, 733, 870, 946
BmcAI	AGTACT	1 cut(s)	898
Bme18I	GGWCC	2 cut(s)	235, 456
BmeT110I	CYCGRG	1 cut(s)	108
BmgBI	CACGTC	1 cut(s)	224
BmgT120I	GGNCC	2 cut(s)	235, 456
BmsI	GCATC	1 cut(s)	11
BpiI	GAAGAC	2 cut(s)	402, 567
BplI	GAGNNNNNCTC	2 cut(s)	313, 345
BpmI	CTGGAG	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	167
BsaAI	YACGTR	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	649
BsaJI	CCNNGG	1 cut(s)	835
BsaWI	WCCGGW	2 cut(s)	296, 686
BsaXI	ACNNNNNCTCC	2 cut(s)	337, 367
Bse1I	ACTGG	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	850
BseAI	TCCGGA	1 cut(s)	686
BseDI	CCNNGG	1 cut(s)	835
BseGI	GGATG	1 cut(s)	958
BseMI	GCAATG	1 cut(s)	850
BseMII	CTCAG	2 cut(s)	83, 983
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	2 cut(s)	443, 736
BseXI	GCAGC	4 cut(s)	568, 718, 880, 956
BsgI	GTGCAG	1 cut(s)	328
Bsh1236I	CGCG	2 cut(s)	572, 622
BsiHKCI	CYCGRG	1 cut(s)	108
BsiSI	CCGG	3 cut(s)	297, 356, 687
BsiWI	CGTACG	1 cut(s)	79
BsmAI	GTCTC	5 cut(s)	135, 230, 355, 494, 649
BsmBI	CGTCTC	2 cut(s)	230, 355
Bso31I	GGTCTC	1 cut(s)	649
BsoBI	CYCGRG	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	970
Bsp13I	TCCGGA	1 cut(s)	686
Bsp143I	GATC	4 cut(s)	527, 642, 701, 955
Bsp68I	TCGCGA	1 cut(s)	622
BspACI	CCGC	3 cut(s)	5, 173, 579
BspCNI	CTCAG	2 cut(s)	84, 982
BspEI	TCCGGA	1 cut(s)	686
BspFNI	CGCG	2 cut(s)	572, 622
BspTNI	GGTCTC	1 cut(s)	649
BsrDI	GCAATG	1 cut(s)	850
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	835
BssMI	GATC	4 cut(s)	527, 642, 701, 955
BssT1I	CCWWGG	1 cut(s)	835
Bst4CI	ACNGT	5 cut(s)	29, 304, 349, 891, 901
Bst6I	CTCTTC	3 cut(s)	188, 213, 788
BstBAI	YACGTR	1 cut(s)	83
BstC8I	GCNNGC	3 cut(s)	197, 729, 857
BstDEI	CTNAG	4 cut(s)	92, 467, 524, 969
BstF5I	GGATG	1 cut(s)	958
BstFNI	CGCG	2 cut(s)	572, 622
BstHHI	GCGC	1 cut(s)	572
BstKTI	GATC	4 cut(s)	530, 645, 704, 958
BstMAI	GTCTC	5 cut(s)	135, 230, 355, 494, 649
BstMBI	GATC	4 cut(s)	527, 642, 701, 955
BstMWI	GCNNNNNNNGC	7 cut(s)	515, 578, 590, 628, 856, 865, 874
BstSFI	CTRYAG	1 cut(s)	277
BstSNI	TACGTA	1 cut(s)	83
BstUI	CGCG	2 cut(s)	572, 622
BstV1I	GCAGC	4 cut(s)	568, 718, 880, 956
BstV2I	GAAGAC	2 cut(s)	402, 567
BtgZI	GCGATG	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	224
BtsCI	GGATG	1 cut(s)	958
BtsIMutI	CAGTG	2 cut(s)	34, 321
BtuMI	TCGCGA	1 cut(s)	622
Cac8I	GCNNGC	3 cut(s)	197, 729, 857
CfoI	GCGC	1 cut(s)	572
Cfr13I	GGNCC	2 cut(s)	235, 456
CseI	GACGC	2 cut(s)	561, 921
Csp6I	GTAC	3 cut(s)	80, 801, 897
CviAII	CATG	1 cut(s)	567
CviQI	GTAC	3 cut(s)	80, 801, 897
DdeI	CTNAG	4 cut(s)	92, 467, 524, 969
DpnI	GATC	4 cut(s)	529, 644, 703, 957
DpnII	GATC	4 cut(s)	527, 642, 701, 955
Eam1104I	CTCTTC	3 cut(s)	188, 213, 788
EarI	CTCTTC	3 cut(s)	188, 213, 788
Eco105I	TACGTA	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	835
Eco24I	GRGCYC	1 cut(s)	970
Eco31I	GGTCTC	1 cut(s)	649
Eco47I	GGWCC	2 cut(s)	235, 456
Eco57I	CTGAAG	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	108
EcoRI	GAATTC	2 cut(s)	272, 826
EcoT14I	CCWWGG	1 cut(s)	835
EcoT38I	GRGCYC	1 cut(s)	970
ErhI	CCWWGG	1 cut(s)	835
Esp3I	CGTCTC	2 cut(s)	230, 355
FaeI	CATG	1 cut(s)	570
FaiI	YATR	5 cut(s)	53, 568, 696, 719, 894
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FatI	CATG	1 cut(s)	566
FbaI	TGATCA	1 cut(s)	955
Fnu4HI	GCNGC	5 cut(s)	6, 582, 732, 869, 945
FokI	GGATG	1 cut(s)	965
FriOI	GRGCYC	1 cut(s)	970
Fsp4HI	GCNGC	5 cut(s)	6, 582, 732, 869, 945
FspBI	CTAG	4 cut(s)	14, 248, 407, 948
GlaI	GCGC	1 cut(s)	571
GluI	GCNGC	5 cut(s)	6, 582, 732, 869, 945
GsuI	CTGGAG	1 cut(s)	297
HapII	CCGG	3 cut(s)	297, 356, 687
HgaI	GACGC	2 cut(s)	561, 921
HhaI	GCGC	1 cut(s)	572
Hin1II	CATG	1 cut(s)	570
Hin6I	GCGC	1 cut(s)	570
HinP1I	GCGC	1 cut(s)	570
HincII	GTYRAC	1 cut(s)	904
HindII	GTYRAC	1 cut(s)	904
HindIII	AAGCTT	2 cut(s)	197, 507
HinfI	GANTC	8 cut(s)	244, 338, 362, 419, 560, 602, 915, 939
HpaI	GTTAAC	1 cut(s)	904
HpaII	CCGG	3 cut(s)	297, 356, 687
Hpy166II	GTNNAC	1 cut(s)	904
Hpy188I	TCNGA	7 cut(s)	93, 418, 494, 556, 817, 914, 972
Hpy188III	TCNNGA	9 cut(s)	14, 110, 146, 248, 513, 621, 687, 936, 959
Hpy8I	GTNNAC	1 cut(s)	904
Hpy99I	CGWCG	2 cut(s)	269, 272
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	5 cut(s)	29, 304, 349, 891, 901
HpyCH4IV	ACGT	2 cut(s)	82, 223
HpyCH4V	TGCA	5 cut(s)	345, 593, 784, 850, 855
HpyF10VI	GCNNNNNNNGC	7 cut(s)	515, 578, 590, 628, 856, 865, 874
HpyF3I	CTNAG	4 cut(s)	92, 467, 524, 969
HpySE526I	ACGT	2 cut(s)	82, 223
Hsp92II	CATG	1 cut(s)	570
HspAI	GCGC	1 cut(s)	570
Kpn2I	TCCGGA	1 cut(s)	686
Ksp22I	TGATCA	1 cut(s)	955
KspAI	GTTAAC	1 cut(s)	904
Kzo9I	GATC	4 cut(s)	527, 642, 701, 955
LmnI	GCTCC	1 cut(s)	839
LpnPI	CCDG	7 cut(s)	183, 310, 327, 355, 369, 405, 700
Lsp1109I	GCAGC	4 cut(s)	568, 718, 880, 956
LweI	GCATC	1 cut(s)	11
MaeI	CTAG	4 cut(s)	14, 248, 407, 948
MaeII	ACGT	2 cut(s)	82, 223
MaeIII	GTNAC	3 cut(s)	58, 304, 316
MalI	GATC	4 cut(s)	529, 644, 703, 957
MboI	GATC	4 cut(s)	527, 642, 701, 955
MhlI	GDGCHC	1 cut(s)	970
MluCI	AATT	3 cut(s)	272, 819, 826
MlyI	GAGTC	3 cut(s)	347, 371, 569
MmeI	TCCRAC	1 cut(s)	892
MroI	TCCGGA	1 cut(s)	686
MseI	TTAA	3 cut(s)	387, 504, 903
MslI	CAYNNNNRTG	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	581
MspI	CCGG	3 cut(s)	297, 356, 687
MvnI	CGCG	2 cut(s)	572, 622
MwoI	GCNNNNNNNGC	7 cut(s)	515, 578, 590, 628, 856, 865, 874
NdeII	GATC	4 cut(s)	527, 642, 701, 955
NlaIII	CATG	1 cut(s)	570
NmuCI	GTSAC	1 cut(s)	316
NruI	TCGCGA	1 cut(s)	622
PaeR7I	CTCGAG	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	1 cut(s)	929
PfeI	GAWTC	5 cut(s)	244, 419, 602, 915, 939
Pfl23II	CGTACG	1 cut(s)	79
PkrI	GCNGC	5 cut(s)	7, 583, 733, 870, 946
PleI	GAGTC	3 cut(s)	346, 370, 568
PpsI	GAGTC	3 cut(s)	346, 370, 568
Ppu21I	YACGTR	1 cut(s)	83
PspLI	CGTACG	1 cut(s)	79
PspPI	GGNCC	2 cut(s)	235, 456
RruI	TCGCGA	1 cut(s)	622
RsaI	GTAC	3 cut(s)	81, 802, 898
RsaNI	GTAC	3 cut(s)	80, 801, 897
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	3 cut(s)	387, 504, 903
SatI	GCNGC	5 cut(s)	6, 582, 732, 869, 945
Sau3AI	GATC	4 cut(s)	527, 642, 701, 955
Sau96I	GGNCC	2 cut(s)	235, 456
ScaI	AGTACT	1 cut(s)	898
SchI	GAGTC	3 cut(s)	347, 371, 569
SduI	GDGCHC	1 cut(s)	970
SfaNI	GCATC	1 cut(s)	11
SfcI	CTRYAG	1 cut(s)	277
Sfr274I	CTCGAG	1 cut(s)	108
SinI	GGWCC	2 cut(s)	235, 456
SlaI	CTCGAG	1 cut(s)	108
SmiMI	CAYNNNNRTG	1 cut(s)	50
SmlI	CTYRAG	2 cut(s)	108, 146
SmoI	CTYRAG	2 cut(s)	108, 146
SnaBI	TACGTA	1 cut(s)	83
Sse9I	AATT	3 cut(s)	272, 819, 826
SsiI	CCGC	3 cut(s)	5, 173, 579
SspI	AATATT	1 cut(s)	413
SspMI	CTAG	4 cut(s)	14, 248, 407, 948
StyI	CCWWGG	1 cut(s)	835
TaaI	ACNGT	5 cut(s)	29, 304, 349, 891, 901
TaiI	ACGT	2 cut(s)	85, 226
TaqI	TCGA	7 cut(s)	109, 117, 264, 336, 512, 758, 809
TasI	AATT	3 cut(s)	272, 819, 826
TatI	WGTACW	1 cut(s)	896
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	5 cut(s)	244, 419, 602, 915, 939
Tru1I	TTAA	3 cut(s)	387, 504, 903
Tru9I	TTAA	3 cut(s)	387, 504, 903
TscAI	CASTG	2 cut(s)	34, 321
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	4 cut(s)	581, 731, 868, 944
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	2 cut(s)	411, 491
TspGWI	ACGGA	2 cut(s)	321, 768
TspRI	CASTG	2 cut(s)	34, 321
VpaK11BI	GGWCC	2 cut(s)	235, 456
XapI	RAATTY	2 cut(s)	272, 826
XbaI	TCTAGA	2 cut(s)	13, 247
XhoI	CTCGAG	1 cut(s)	108
XspI	CTAG	4 cut(s)	14, 248, 407, 948
ZrmI	AGTACT	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.