Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007268

Physical Location & Seq

Genomic Coordinates Forward (+)

20297229 .. 20298227

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g17790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAGCTCTCCTCCACACCCCAGAGAGTTTGAGTTTCAAATGTCATCCACTTCTTTGGAGAGAGAACCCCCAACAACTTCTCCAGCTGATGAGCTCTTTTACAAAGGGAAGCTCCTTCCCCTCCACCTCCCCCCGCGCTTACAAATGGTCGAGAAACTACTGCAGAACTCCTATTCTAGTTTTGATCATCAAAAAGATATGTTTGAAGAATTCTATAGCACTCCATTGGCCACCACTGCCCCAACTCCAACCACAACCAGCACCCCATTTGAGTCCTGCAATATTTCGCCTTCGGAGTCTTGCCAGGTTAGTAGGGAGCTGAACCCCGAGGAGTATATTTTGGAGTACTCAACTGAAGCAAGCGGCTTCATAAATGAAAACCCGAAAAAGTCTTGGACCAAAAAGTTCAGGCAGTCATTGCTTGGTTCAAAGCTGAAGTCTTCCCGGGCTTACCTCAAGTCTCTGTTTGGCAAATACAGTTGTTCCAATGAGTCCAGTGCAGCTGCTGCCAGGAATGCAGATGGAGGAATGGCTTTCAAATCTGAGGATTTAAGTAAATATATGAAGACATCCAAGAGCCCATTTGGACAAACTCAGAGGGAGAAATACCAAATGTCTGCTTCTGGTGCGAGGAGCTTCAGCAAAGACAAGATCATTGAGGATGGTGCTGCTCTCCACAGGAGATCATTCTCACTGGCCATCAAACGGAATCCAACAAAGATCTCGACATCCTCTTCATCATCTTCGGGGTCTTCATCTTCGTCTTCATCATCTTCAAATCATTCAAGTGGGACTCAGGAGCTGCAGTTTCTGAAGAGATGCAACAGTGCAAGTTCAGAAATTGAGAGTTCAATTCAGGGGGCAATTGCACATTGCAAGCAGTCGCAGCAACGTTTCCGTTCAAGAAAGACAGTAAGTGAAGTTGGGTTCTACACCTTGTCAGCTTCCAGGATAGCAGCTTGCGAGAATCAAGAAAGACCGGAGCTTTGCAGGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

333

Amino Acids

36.78

Weight (kDa)

9.12

Isoelectric Point (pI)

73.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39370
fragaria_vesca	FvH4_7g20880
malus_domestica	MD07G1186600.v1.1
prunus_persica	Prupe.2G225400_v2.0.a1
pyrus_communis	pycom07g17790
rosa_chinensis	RchiOBHm_Chr1g0365131 RchiOBHm_Chr7g0221341
rosa_laevigata	RLG00000002159 RLG00000027439
rosa_multiflora	Rmu_sc0000324.1_g000026 Rmu_sc0001688.1_g000007
rosa_roxburghii	Rroxscaffold_2G00105470 Rroxscaffold_3G00238390 Rroxscaffold_4G00291400
rosa_rugosa	Rorug01G0320200
rosa_samantha	Rh1AG328800 Rh1BG290400 Rh1CG307100 Rh1DG322000 Rh2DG256000 Rh7AG341500 Rh7CG359400 Rh7DG340000
rosa_wichuraiana	Rw1G029180 Rw7G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	136
AciI	CCGC	2 cut(s)	134, 363
AclI	AACGTT	1 cut(s)	892
AcoI	YGGCCR	2 cut(s)	228, 696
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	4 cut(s)	375, 455, 622, 833
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	705
AgsI	TTSAA	8 cut(s)	38, 206, 429, 538, 777, 786, 852, 903
AjnI	CCWGG	3 cut(s)	303, 509, 947
Alw21I	GWGCWC	2 cut(s)	8, 96
Alw26I	GTCTC	1 cut(s)	465
AlwNI	CAGNNNCTG	4 cut(s)	506, 802, 811, 996
Ama87I	CYCGRG	2 cut(s)	326, 444
AoxI	GGCC	2 cut(s)	228, 696
ApeKI	GCWGC	7 cut(s)	500, 503, 506, 668, 802, 886, 956
ApoI	RAATTY	1 cut(s)	209
ArsI	GACNNNNNNTTYG	3 cut(s)	422, 454, 969
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	396
AsuC2I	CCSGG	2 cut(s)	445, 446
AvaI	CYCGRG	2 cut(s)	326, 444
AvaII	GGWCC	1 cut(s)	396
BalI	TGGCCA	2 cut(s)	230, 698
BanII	GRGCYC	3 cut(s)	8, 96, 581
BbsI	GAAGAC	4 cut(s)	432, 572, 744, 756
Bbv12I	GWGCWC	2 cut(s)	8, 96
BbvI	GCAGC	7 cut(s)	490, 493, 512, 655, 789, 898, 968
BccI	CCATC	3 cut(s)	515, 656, 707
BciT130I	CCWGG	3 cut(s)	305, 511, 949
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	2 cut(s)	445, 446
BcoDI	GTCTC	1 cut(s)	465
BfaI	CTAG	1 cut(s)	177
BfmI	CTRYAG	3 cut(s)	161, 214, 803
BglII	AGATCT	1 cut(s)	720
BisI	GCNGC	8 cut(s)	364, 501, 504, 507, 669, 803, 887, 957
BlsI	GCNGC	8 cut(s)	365, 502, 505, 508, 670, 804, 888, 958
BmcAI	AGTACT	1 cut(s)	347
Bme1390I	CCNGG	5 cut(s)	305, 445, 446, 511, 949
Bme18I	GGWCC	1 cut(s)	396
BmeT110I	CYCGRG	2 cut(s)	326, 444
BmgT120I	GGNCC	1 cut(s)	396
BmrFI	CCNGG	5 cut(s)	305, 445, 446, 511, 949
BmsI	GCATC	1 cut(s)	809
BpiI	GAAGAC	4 cut(s)	432, 572, 744, 756
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	440
BpuMI	CCSGG	2 cut(s)	445, 446
BsaJI	CCNNGG	2 cut(s)	327, 444
BsaWI	WCCGGW	1 cut(s)	979
BsaXI	ACNNNNNCTCC	4 cut(s)	64, 94, 791, 821
Bsc4I	CCNNNNNNNGG	1 cut(s)	705
Bse1I	ACTGG	2 cut(s)	495, 699
Bse3DI	GCAATG	2 cut(s)	416, 871
BseBI	CCWGG	3 cut(s)	305, 511, 949
BseDI	CCNNGG	2 cut(s)	327, 444
BseGI	GGATG	4 cut(s)	44, 569, 667, 728
BseLI	CCNNNNNNNGG	1 cut(s)	705
BseMI	GCAATG	2 cut(s)	416, 871
BseMII	CTCAG	3 cut(s)	534, 608, 809
BseNI	ACTGG	2 cut(s)	495, 699
BseRI	GAGGAG	2 cut(s)	344, 646
BseXI	GCAGC	7 cut(s)	490, 493, 512, 655, 789, 898, 968
BsgI	GTGCAG	1 cut(s)	519
Bsh1236I	CGCG	1 cut(s)	136
BshFI	GGCC	2 cut(s)	230, 698
BsiHKAI	GWGCWC	2 cut(s)	8, 96
BsiHKCI	CYCGRG	2 cut(s)	326, 444
BsiSI	CCGG	2 cut(s)	445, 980
BslFI	GGGAC	1 cut(s)	805
BslI	CCNNNNNNNGG	1 cut(s)	705
BsmAI	GTCTC	1 cut(s)	465
BsmFI	GGGAC	1 cut(s)	805
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	2 cut(s)	230, 698
BsoBI	CYCGRG	2 cut(s)	326, 444
Bsp1286I	GDGCHC	3 cut(s)	8, 96, 581
Bsp143I	GATC	4 cut(s)	184, 651, 683, 720
BspACI	CCGC	2 cut(s)	134, 363
BspANI	GGCC	2 cut(s)	230, 698
BspCNI	CTCAG	3 cut(s)	535, 607, 808
BspFNI	CGCG	1 cut(s)	136
BspMAI	CTGCAG	2 cut(s)	165, 807
BsrDI	GCAATG	2 cut(s)	416, 871
BsrI	ACTGG	2 cut(s)	495, 699
BssECI	CCNNGG	2 cut(s)	327, 444
BssMI	GATC	4 cut(s)	184, 651, 683, 720
Bst2UI	CCWGG	3 cut(s)	305, 511, 949
Bst4CI	ACNGT	3 cut(s)	479, 827, 913
Bst6I	CTCTTC	2 cut(s)	739, 809
BstAPI	GCANNNNNTGC	2 cut(s)	418, 506
BstC8I	GCNNGC	3 cut(s)	361, 878, 961
BstDEI	CTNAG	3 cut(s)	543, 594, 795
BstF5I	GGATG	4 cut(s)	44, 569, 667, 728
BstFNI	CGCG	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	4 cut(s)	187, 654, 686, 723
BstMAI	GTCTC	1 cut(s)	465
BstMBI	GATC	4 cut(s)	184, 651, 683, 720
BstMWI	GCNNNNNNNGC	6 cut(s)	236, 418, 506, 515, 626, 886
BstNI	CCWGG	3 cut(s)	305, 511, 949
BstSCI	CCNGG	5 cut(s)	303, 443, 444, 509, 947
BstSFI	CTRYAG	3 cut(s)	161, 214, 803
BstUI	CGCG	1 cut(s)	136
BstV1I	GCAGC	7 cut(s)	490, 493, 512, 655, 789, 898, 968
BstV2I	GAAGAC	4 cut(s)	432, 572, 744, 756
BstX2I	RGATCY	1 cut(s)	720
BstXI	CCANNNNNNTGG	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	720
BsuRI	GGCC	2 cut(s)	230, 698
BtsCI	GGATG	4 cut(s)	44, 569, 667, 728
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	4 cut(s)	234, 502, 692, 832
Cac8I	GCNNGC	3 cut(s)	361, 878, 961
CaiI	CAGNNNCTG	4 cut(s)	506, 802, 811, 996
CfoI	GCGC	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	396
Cfr9I	CCCGGG	1 cut(s)	444
Csp6I	GTAC	1 cut(s)	346
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	3 cut(s)	543, 594, 795
DpnI	GATC	4 cut(s)	186, 653, 685, 722
DpnII	GATC	4 cut(s)	184, 651, 683, 720
EaeI	YGGCCR	2 cut(s)	228, 696
Eam1104I	CTCTTC	2 cut(s)	739, 809
EarI	CTCTTC	2 cut(s)	739, 809
Ecl136II	GAGCTC	2 cut(s)	6, 94
Eco24I	GRGCYC	3 cut(s)	8, 96, 581
Eco47I	GGWCC	1 cut(s)	396
Eco53kI	GAGCTC	2 cut(s)	6, 94
Eco57I	CTGAAG	4 cut(s)	375, 455, 622, 833
Eco88I	CYCGRG	2 cut(s)	326, 444
EcoICRI	GAGCTC	2 cut(s)	6, 94
EcoRI	GAATTC	1 cut(s)	209
EcoRII	CCWGG	3 cut(s)	303, 509, 947
EcoT38I	GRGCYC	3 cut(s)	8, 96, 581
FaiI	YATR	6 cut(s)	200, 216, 336, 371, 561, 563
FaqI	GGGAC	1 cut(s)	805
FauI	CCCGC	1 cut(s)	141
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	8 cut(s)	364, 501, 504, 507, 669, 803, 887, 957
FokI	GGATG	4 cut(s)	31, 556, 674, 715
FriOI	GRGCYC	3 cut(s)	8, 96, 581
Fsp4HI	GCNGC	8 cut(s)	364, 501, 504, 507, 669, 803, 887, 957
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	8 cut(s)	364, 501, 504, 507, 669, 803, 887, 957
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	230, 698
HapII	CCGG	2 cut(s)	445, 980
HhaI	GCGC	1 cut(s)	138
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HinfI	GANTC	6 cut(s)	272, 296, 491, 709, 793, 967
HpaII	CCGG	2 cut(s)	445, 980
Hpy188I	TCNGA	5 cut(s)	295, 544, 597, 813, 838
Hpy188III	TCNNGA	5 cut(s)	151, 724, 797, 903, 971
HpyAV	CCTTC	2 cut(s)	125, 300
HpyCH4III	ACNGT	3 cut(s)	479, 827, 913
HpyCH4IV	ACGT	1 cut(s)	892
HpyF10VI	GCNNNNNNNGC	6 cut(s)	236, 418, 506, 515, 626, 886
HpyF3I	CTNAG	3 cut(s)	543, 594, 795
HpySE526I	ACGT	1 cut(s)	892
HspAI	GCGC	1 cut(s)	136
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	184, 651, 683, 720
LmnI	GCTCC	5 cut(s)	117, 316, 633, 799, 982
Lsp1109I	GCAGC	7 cut(s)	490, 493, 512, 655, 789, 898, 968
LweI	GCATC	1 cut(s)	809
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	1 cut(s)	892
MalI	GATC	4 cut(s)	186, 653, 685, 722
MboI	GATC	4 cut(s)	184, 651, 683, 720
MfeI	CAATTG	1 cut(s)	864
MflI	RGATCY	1 cut(s)	720
MhlI	GDGCHC	3 cut(s)	8, 96, 581
MlsI	TGGCCA	2 cut(s)	230, 698
MluCI	AATT	4 cut(s)	209, 840, 852, 864
MluNI	TGGCCA	2 cut(s)	230, 698
MlyI	GAGTC	4 cut(s)	281, 305, 500, 787
MmeI	TCCRAC	2 cut(s)	272, 737
Mox20I	TGGCCA	2 cut(s)	230, 698
MscI	TGGCCA	2 cut(s)	230, 698
MseI	TTAA	1 cut(s)	551
MslI	CAYNNNNRTG	1 cut(s)	786
Msp20I	TGGCCA	2 cut(s)	230, 698
MspA1I	CMGCKG	2 cut(s)	86, 503
MspI	CCGG	2 cut(s)	445, 980
MspR9I	CCNGG	5 cut(s)	305, 445, 446, 511, 949
MunI	CAATTG	1 cut(s)	864
Mva1269I	GAATGC	1 cut(s)	520
MvaI	CCWGG	3 cut(s)	305, 511, 949
MvnI	CGCG	1 cut(s)	136
MwoI	GCNNNNNNNGC	6 cut(s)	236, 418, 506, 515, 626, 886
NciI	CCSGG	2 cut(s)	445, 446
NdeII	GATC	4 cut(s)	184, 651, 683, 720
PctI	GAATGC	1 cut(s)	520
PfeI	GAWTC	2 cut(s)	709, 967
PfoI	TCCNGGA	1 cut(s)	947
PkrI	GCNGC	8 cut(s)	365, 502, 505, 508, 670, 804, 888, 958
PleI	GAGTC	4 cut(s)	280, 304, 499, 787
PpsI	GAGTC	4 cut(s)	280, 304, 499, 787
Psp124BI	GAGCTC	2 cut(s)	8, 96
Psp1406I	AACGTT	1 cut(s)	892
Psp6I	CCWGG	3 cut(s)	303, 509, 947
PspGI	CCWGG	3 cut(s)	303, 509, 947
PspPI	GGNCC	1 cut(s)	396
PstI	CTGCAG	2 cut(s)	165, 807
PstNI	CAGNNNCTG	4 cut(s)	506, 802, 811, 996
PsuI	RGATCY	1 cut(s)	720
PvuII	CAGCTG	2 cut(s)	86, 503
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	1 cut(s)	786
SacI	GAGCTC	2 cut(s)	8, 96
SaqAI	TTAA	1 cut(s)	551
SatI	GCNGC	8 cut(s)	364, 501, 504, 507, 669, 803, 887, 957
Sau3AI	GATC	4 cut(s)	184, 651, 683, 720
Sau96I	GGNCC	1 cut(s)	396
ScaI	AGTACT	1 cut(s)	347
SchI	GAGTC	4 cut(s)	281, 305, 500, 787
ScrFI	CCNGG	5 cut(s)	305, 445, 446, 511, 949
SduI	GDGCHC	3 cut(s)	8, 96, 581
SfaNI	GCATC	1 cut(s)	809
SfcI	CTRYAG	3 cut(s)	161, 214, 803
SinI	GGWCC	1 cut(s)	396
SmaI	CCCGGG	1 cut(s)	446
SmiMI	CAYNNNNRTG	1 cut(s)	786
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	4 cut(s)	209, 840, 852, 864
SsiI	CCGC	2 cut(s)	134, 363
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	1 cut(s)	177
SstI	GAGCTC	2 cut(s)	8, 96
StyD4I	CCNGG	5 cut(s)	303, 443, 444, 509, 947
TaaI	ACNGT	3 cut(s)	479, 827, 913
TaiI	ACGT	1 cut(s)	895
TaqI	TCGA	2 cut(s)	150, 725
TasI	AATT	4 cut(s)	209, 840, 852, 864
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	1 cut(s)	366
TfiI	GAWTC	2 cut(s)	709, 967
Tru1I	TTAA	1 cut(s)	551
Tru9I	TTAA	1 cut(s)	551
TscAI	CASTG	4 cut(s)	241, 502, 699, 832
TseI	GCWGC	7 cut(s)	500, 503, 506, 668, 802, 886, 956
TspDTI	ATGAA	6 cut(s)	358, 390, 578, 726, 744, 756
TspGWI	ACGGA	2 cut(s)	721, 887
TspMI	CCCGGG	1 cut(s)	444
TspRI	CASTG	4 cut(s)	241, 502, 699, 832
VpaK11BI	GGWCC	1 cut(s)	396
XapI	RAATTY	1 cut(s)	209
XmaI	CCCGGG	1 cut(s)	444
XspI	CTAG	1 cut(s)	177
ZrmI	AGTACT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.