Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007268

Physical Location & Seq

Genomic Coordinates Reverse (-)

11670189 .. 11671310

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027439

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCTGTTGACCACTTATCCTATGATCCTTCAGAAGATGACTACATAGACATGGAAGTCGGTTCATACTCAGCCTTCTTCTCCCACTCTATGAGCTCTCCTCCACGTCCCAGAGAGTTTGAGTTTCAAATGTCATCAAGCTCACTAGAAATAGAGCCTTCAACTACTTCACCAGCTGATGAGCTTTTCTATAAAGGAAAGCTCCTTCCTCTTCACCTCCCACCGCGTTTACAAATGGTCGAAAAACTACTCCAAAACTCCACTTCATGCTTTGATCATAACCCAAAAGATAGATTTGAAGAGTTCTATAGCACCCCATTAGCCACTACAGCCACAACTCCAACAACAATGAGTACCCCATTTGAGTCCTGCAACATCTCACCTTCGGAGTCTTGTCAAGTTAGCAGAGAGCTGAACCGGGATGAGTATATTTTCGAGTATGCAACTGATGGGAGTGGATTTGGATATGTCAATGAAAACTCGAAAAAATCTTGGACCAAAAAGTTGAAGCAGTATTCCTCACTTGGGTCTAAGCTCAGGGCTTCAAGGGCTTATCTCAAGTCCTTGTTTAGCAAAACTGGTTGCTCCAGTGATTCCAGTGCTCTAGCAGCTGCTAAGAATGCAGATGAAGGAATGGTTATGAAATCCGAGGACTTGAGCAAGTACACGAAGGCGGGGAAGAAAAACCCCTTTGGACAAATTCAGAAGGATAAATATAGAATGTCTGCTCCTGGCATGAGGAGCTTCAACAAAGACATGATCACTGAGAATGGTGCTGGTCTTCACAGAAGGTCATTTTCATTAGCTATCAAGCGGCATTCTACAAAGGACTCTACTTCACCATCCTCCTCCTCCTCGTCATCATCAGCTTCTTCTTCATCTTCATGTTCAAACCTTTCAAATGGGACTCAGGAGCCGAAGTTTCTGAAGAGATGCAACAGTGCAAATTCAGAAATGGAGAGTTCAATTCAGGGGGCCATTGCGCATTGCAAGCAATCTCAGCAAACACTTCGTTCAAGAAAGACTGCGAGTGAAGTTGGGTTTTACTCATTGTCAACATCACTGTCAGCTTGTGAGGACAAAGATGGGCCAGACCTTTGCAGGGGGATCAGAAAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

374

Amino Acids

41.19

Weight (kDa)

8.58

Isoelectric Point (pI)

64.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39370
fragaria_vesca	FvH4_7g20880
malus_domestica	MD07G1186600.v1.1
prunus_persica	Prupe.2G225400_v2.0.a1
pyrus_communis	pycom07g17790
rosa_chinensis	RchiOBHm_Chr1g0365131 RchiOBHm_Chr7g0221341
rosa_laevigata	RLG00000002159 RLG00000027439
rosa_multiflora	Rmu_sc0000324.1_g000026 Rmu_sc0001688.1_g000007
rosa_roxburghii	Rroxscaffold_2G00105470 Rroxscaffold_3G00238390 Rroxscaffold_4G00291400
rosa_rugosa	Rorug01G0320200
rosa_samantha	Rh1AG328800 Rh1BG290400 Rh1CG307100 Rh1DG322000 Rh2DG256000 Rh7AG341500 Rh7CG359400 Rh7DG340000
rosa_wichuraiana	Rw1G029180 Rw7G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
Acc16I	TGCGCA	1 cut(s)	984
AccII	CGCG	1 cut(s)	226
AciI	CCGC	3 cut(s)	224, 674, 814
AclWI	GGATC	2 cut(s)	20, 1115
AcsI	RAATTY	2 cut(s)	699, 946
AcuI	CTGAAG	2 cut(s)	15, 947
AfaI	GTAC	2 cut(s)	355, 665
AfiI	CCNNNNNNNGG	2 cut(s)	525, 1102
AjiI	CACGTC	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	730
Alw21I	GWGCWC	2 cut(s)	98, 604
AlwI	GGATC	2 cut(s)	20, 1115
AoxI	GGCC	2 cut(s)	975, 1088
ApeKI	GCWGC	2 cut(s)	608, 611
ApoI	RAATTY	2 cut(s)	699, 946
AspLEI	GCGC	1 cut(s)	985
AspS9I	GGNCC	3 cut(s)	495, 975, 1088
AsuC2I	CCSGG	1 cut(s)	419
AsuHPI	GGTGA	4 cut(s)	162, 206, 372, 831
AvaII	GGWCC	1 cut(s)	495
BanII	GRGCYC	1 cut(s)	98
BbsI	GAAGAC	1 cut(s)	773
Bbv12I	GWGCWC	2 cut(s)	98, 604
BbvI	GCAGC	2 cut(s)	598, 620
BccI	CCATC	3 cut(s)	443, 850, 1079
BcgI	CGANNNNNNTGC	2 cut(s)	992, 1026
BciT130I	CCWGG	1 cut(s)	732
BclI	TGATCA	2 cut(s)	274, 759
BcnI	CCSGG	1 cut(s)	419
BfaI	CTAG	2 cut(s)	146, 605
BfmI	CTRYAG	2 cut(s)	307, 327
BisI	GCNGC	3 cut(s)	609, 612, 815
BlsI	GCNGC	3 cut(s)	610, 613, 816
Bme1390I	CCNGG	2 cut(s)	419, 732
Bme18I	GGWCC	1 cut(s)	495
BmgBI	CACGTC	1 cut(s)	107
BmgT120I	GGNCC	3 cut(s)	495, 975, 1088
BmiI	GGNNCC	2 cut(s)	915, 976
BmrFI	CCNGG	2 cut(s)	419, 732
BmsI	GCATC	1 cut(s)	923
BpiI	GAAGAC	1 cut(s)	773
BplI	GAGNNNNNCTC	2 cut(s)	85, 117
BpmI	CTGGAG	1 cut(s)	571
Bpu10I	CCTNAGC	1 cut(s)	536
BpuEI	CTTGAG	2 cut(s)	542, 676
BpuMI	CCSGG	1 cut(s)	419
BsaJI	CCNNGG	1 cut(s)	648
BsaXI	ACNNNNNCTCC	2 cut(s)	905, 935
Bsc4I	CCNNNNNNNGG	2 cut(s)	525, 1102
Bse1I	ACTGG	3 cut(s)	583, 588, 597
Bse3DI	GCAATG	2 cut(s)	978, 985
BseBI	CCWGG	1 cut(s)	732
BseDI	CCNNGG	1 cut(s)	648
BseGI	GGATG	2 cut(s)	427, 842
BseLI	CCNNNNNNNGG	2 cut(s)	525, 1102
BseMI	GCAATG	2 cut(s)	978, 985
BseMII	CTCAG	5 cut(s)	84, 550, 756, 923, 1013
BseNI	ACTGG	3 cut(s)	583, 588, 597
BseRI	GAGGAG	5 cut(s)	90, 754, 838, 841, 844
BseXI	GCAGC	2 cut(s)	598, 620
Bsh1236I	CGCG	1 cut(s)	226
BshFI	GGCC	2 cut(s)	977, 1090
BsiHKAI	GWGCWC	2 cut(s)	98, 604
BsiSI	CCGG	1 cut(s)	418
BslFI	GGGAC	2 cut(s)	93, 919
BslI	CCNNNNNNNGG	2 cut(s)	525, 1102
BsmFI	GGGAC	2 cut(s)	93, 919
BsmI	GAATGC	2 cut(s)	625, 817
BsnI	GGCC	2 cut(s)	977, 1090
Bsp1286I	GDGCHC	2 cut(s)	98, 604
Bsp143I	GATC	4 cut(s)	25, 274, 759, 1107
BspACI	CCGC	3 cut(s)	224, 674, 814
BspANI	GGCC	2 cut(s)	977, 1090
BspCNI	CTCAG	5 cut(s)	83, 549, 757, 922, 1012
BspFNI	CGCG	1 cut(s)	226
BspLI	GGNNCC	2 cut(s)	915, 976
BspPI	GGATC	2 cut(s)	20, 1115
BsrDI	GCAATG	2 cut(s)	978, 985
BsrI	ACTGG	3 cut(s)	583, 588, 597
BssECI	CCNNGG	1 cut(s)	648
BssMI	GATC	4 cut(s)	25, 274, 759, 1107
Bst2UI	CCWGG	1 cut(s)	732
Bst4CI	ACNGT	2 cut(s)	941, 1065
Bst6I	CTCTTC	3 cut(s)	216, 294, 923
BstC8I	GCNNGC	1 cut(s)	992
BstDEI	CTNAG	7 cut(s)	70, 531, 536, 615, 765, 909, 999
BstF5I	GGATG	2 cut(s)	427, 842
BstFNI	CGCG	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	985
BstKTI	GATC	4 cut(s)	28, 277, 762, 1110
BstMBI	GATC	4 cut(s)	25, 274, 759, 1107
BstMWI	GCNNNNNNNGC	7 cut(s)	329, 548, 608, 620, 741, 991, 1000
BstNI	CCWGG	1 cut(s)	732
BstSCI	CCNGG	2 cut(s)	417, 730
BstSFI	CTRYAG	2 cut(s)	307, 327
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	2 cut(s)	598, 620
BstV2I	GAAGAC	1 cut(s)	773
BsuRI	GGCC	2 cut(s)	977, 1090
BtrI	CACGTC	1 cut(s)	107
BtsCI	GGATG	2 cut(s)	427, 842
BtsIMutI	CAGTG	5 cut(s)	595, 604, 762, 946, 1061
Cac8I	GCNNGC	1 cut(s)	992
CfoI	GCGC	1 cut(s)	985
Cfr13I	GGNCC	3 cut(s)	495, 975, 1088
Csp6I	GTAC	2 cut(s)	354, 664
CviAII	CATG	5 cut(s)	52, 267, 736, 757, 885
CviQI	GTAC	2 cut(s)	354, 664
DdeI	CTNAG	7 cut(s)	70, 531, 536, 615, 765, 909, 999
DpnI	GATC	4 cut(s)	27, 276, 761, 1109
DpnII	GATC	4 cut(s)	25, 274, 759, 1107
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eam1104I	CTCTTC	3 cut(s)	216, 294, 923
EarI	CTCTTC	3 cut(s)	216, 294, 923
Ecl136II	GAGCTC	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	495
Eco53kI	GAGCTC	1 cut(s)	96
Eco57I	CTGAAG	2 cut(s)	15, 947
EcoICRI	GAGCTC	1 cut(s)	96
EcoRII	CCWGG	1 cut(s)	730
EcoT38I	GRGCYC	1 cut(s)	98
FaeI	CATG	5 cut(s)	55, 270, 739, 760, 888
FaqI	GGGAC	2 cut(s)	93, 919
FatI	CATG	5 cut(s)	51, 266, 735, 756, 884
FauI	CCCGC	1 cut(s)	667
FbaI	TGATCA	2 cut(s)	274, 759
Fnu4HI	GCNGC	3 cut(s)	609, 612, 815
FokI	GGATG	2 cut(s)	434, 829
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	3 cut(s)	609, 612, 815
FspBI	CTAG	2 cut(s)	146, 605
FspI	TGCGCA	1 cut(s)	984
GlaI	GCGC	1 cut(s)	984
GluI	GCNGC	3 cut(s)	609, 612, 815
GsuI	CTGGAG	1 cut(s)	571
HaeIII	GGCC	2 cut(s)	977, 1090
HapII	CCGG	1 cut(s)	418
HhaI	GCGC	1 cut(s)	985
Hin1II	CATG	5 cut(s)	55, 270, 739, 760, 888
Hin6I	GCGC	1 cut(s)	983
HinP1I	GCGC	1 cut(s)	983
HincII	GTYRAC	2 cut(s)	10, 1056
HindII	GTYRAC	2 cut(s)	10, 1056
HinfI	GANTC	5 cut(s)	365, 389, 593, 830, 907
HpaII	CCGG	1 cut(s)	418
HphI	GGTGA	4 cut(s)	162, 206, 372, 831
Hpy166II	GTNNAC	4 cut(s)	10, 230, 666, 1056
Hpy188I	TCNGA	7 cut(s)	34, 388, 649, 705, 927, 952, 1112
Hpy188III	TCNNGA	2 cut(s)	911, 1017
Hpy8I	GTNNAC	4 cut(s)	10, 230, 666, 1056
HpyAV	CCTTC	9 cut(s)	39, 85, 168, 215, 393, 623, 664, 700, 783
HpyCH4III	ACNGT	2 cut(s)	941, 1065
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	7 cut(s)	372, 443, 623, 936, 944, 990, 1101
HpyF10VI	GCNNNNNNNGC	7 cut(s)	329, 548, 608, 620, 741, 991, 1000
HpyF3I	CTNAG	7 cut(s)	70, 531, 536, 615, 765, 909, 999
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	5 cut(s)	55, 270, 739, 760, 888
HspAI	GCGC	1 cut(s)	983
Ksp22I	TGATCA	2 cut(s)	274, 759
Kzo9I	GATC	4 cut(s)	25, 274, 759, 1107
LmnI	GCTCC	5 cut(s)	207, 590, 733, 741, 913
Lsp1109I	GCAGC	2 cut(s)	598, 620
LweI	GCATC	1 cut(s)	923
MaeI	CTAG	2 cut(s)	146, 605
MaeII	ACGT	1 cut(s)	106
MalI	GATC	4 cut(s)	27, 276, 761, 1109
MboI	GATC	4 cut(s)	25, 274, 759, 1107
MhlI	GDGCHC	2 cut(s)	98, 604
MluCI	AATT	3 cut(s)	699, 946, 966
MlyI	GAGTC	4 cut(s)	374, 398, 824, 901
MmeI	TCCRAC	1 cut(s)	365
MslI	CAYNNNNRTG	2 cut(s)	50, 883
MspA1I	CMGCKG	2 cut(s)	176, 611
MspI	CCGG	1 cut(s)	418
MspR9I	CCNGG	2 cut(s)	419, 732
Mva1269I	GAATGC	2 cut(s)	625, 817
MvaI	CCWGG	1 cut(s)	732
MvnI	CGCG	1 cut(s)	226
MwoI	GCNNNNNNNGC	7 cut(s)	329, 548, 608, 620, 741, 991, 1000
NciI	CCSGG	1 cut(s)	419
NdeII	GATC	4 cut(s)	25, 274, 759, 1107
NlaIII	CATG	5 cut(s)	55, 270, 739, 760, 888
NlaIV	GGNNCC	2 cut(s)	915, 976
NsbI	TGCGCA	1 cut(s)	984
PctI	GAATGC	2 cut(s)	625, 817
PfeI	GAWTC	1 cut(s)	593
PkrI	GCNGC	3 cut(s)	610, 613, 816
PleI	GAGTC	4 cut(s)	373, 397, 824, 901
PpsI	GAGTC	4 cut(s)	373, 397, 824, 901
Psp124BI	GAGCTC	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	730
PspGI	CCWGG	1 cut(s)	730
PspN4I	GGNNCC	2 cut(s)	915, 976
PspPI	GGNCC	3 cut(s)	495, 975, 1088
PvuII	CAGCTG	2 cut(s)	176, 611
RsaI	GTAC	2 cut(s)	355, 665
RsaNI	GTAC	2 cut(s)	354, 664
RseI	CAYNNNNRTG	2 cut(s)	50, 883
SacI	GAGCTC	1 cut(s)	98
SatI	GCNGC	3 cut(s)	609, 612, 815
Sau3AI	GATC	4 cut(s)	25, 274, 759, 1107
Sau96I	GGNCC	3 cut(s)	495, 975, 1088
SchI	GAGTC	4 cut(s)	374, 398, 824, 901
ScrFI	CCNGG	2 cut(s)	419, 732
SduI	GDGCHC	2 cut(s)	98, 604
SfaNI	GCATC	1 cut(s)	923
SfcI	CTRYAG	2 cut(s)	307, 327
SinI	GGWCC	1 cut(s)	495
SmiMI	CAYNNNNRTG	2 cut(s)	50, 883
SmlI	CTYRAG	2 cut(s)	557, 655
SmoI	CTYRAG	2 cut(s)	557, 655
Sse9I	AATT	3 cut(s)	699, 946, 966
SsiI	CCGC	3 cut(s)	224, 674, 814
SspMI	CTAG	2 cut(s)	146, 605
SstI	GAGCTC	1 cut(s)	98
StyD4I	CCNGG	2 cut(s)	417, 730
TaaI	ACNGT	2 cut(s)	941, 1065
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	3 cut(s)	240, 435, 482
TasI	AATT	3 cut(s)	699, 946, 966
TatI	WGTACW	1 cut(s)	663
TauI	GCSGC	1 cut(s)	817
TfiI	GAWTC	1 cut(s)	593
TscAI	CASTG	5 cut(s)	595, 604, 769, 946, 1068
TseI	GCWGC	2 cut(s)	608, 611
TspDTI	ATGAA	8 cut(s)	54, 255, 489, 642, 656, 789, 867, 873
TspRI	CASTG	5 cut(s)	595, 604, 769, 946, 1068
VpaK11BI	GGWCC	1 cut(s)	495
XapI	RAATTY	2 cut(s)	699, 946
XspI	CTAG	2 cut(s)	146, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.