Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007268

Physical Location & Seq

Genomic Coordinates Forward (+)

25236133 .. 25237810

Gene Structure 1678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G225400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCCGTTGATCACGTATCCTGTGACCATGCAGACGACGACTACATCGACATGGAAGTGAGCTCATACTCTGCCTACCTGTGCCACTCCATGAGCTCTCCTCCACACCCCAGAGAGTTTGAGTTTCAAATGTCATCCATTTCCCTAGAGAGAGAGCCTCCCTCAACTTCCCCAGCTGATGAGCTTTTCTACAAAGGAAAGCTCCTTCCCCTCCACCTTCCCCCTCGTTTACAAATGGTTGAAAAACTACTGCAAAACTCCACTTCTGCATTTGATAGCCGAAAAGATATGTTCGAAGAATTCTATAGCACTCCATTGATGAACACTGCTGCCCCAACGCCAACCACAACCAGCACTCCATTTGAATCCTGCAACATCTCACCTTCTGAGTCTTGCCAGGTTAGCAGAGAGCTGAACCCAGAAGAGTATATTTTGGAGTATGCAACTGAAGTGAGTGGCTTTATCCATGAAAACCCAAAAAAGTCTTGGACCAGAAAGTTCAAGCAGTCATTACTGGGATCAAAGCTGAAGGCTTCCCGGGCTTACCTCAAGTCTCTGTTTGGGAAATCTGGTTGCTCAGATGAGAACAGTGCAACAGCTGCTAAGAATGCAGATGGAGGAATGGTTTTAAAGTCTGAGGATTTAAGTAAATATGTGAAGGCGGCCAAGAAAAATCCATTTGGACAAATTCAGAAAGACAAATGCCGGATGTCTGCTTCCGGCACGAGGAGCTTCAACAAAGACAAGATCATTGAAGATGGTGCTGGTATTCACAGAAGATCATTCTCACTGGCCATCAAACGACATTCGACAAAGAACTCAACGTCCTCTTCATCATCATCTGGCTCTTCTTCATCTTCATTTTCAAATCATTCAAATGGGACTCAGGAGCTGCAGTTTCTGAAGAGATGCAACAGTGCAAGTTCAGAAATTGAGAGTTCAATTCAGGGGGCAATTGCGCATTGCAAGCAGTCTCAGCAACCACTTCGTTCAAGAAAGACTGTAAGCGAAGTTGGGTTTTACTCAACGTCAGCTTCCAGGATAGCAGCTTGTGAGGACCAAGAGAGACCAGACCTTTGCAGGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

363

Amino Acids

39.97

Weight (kDa)

7.97

Isoelectric Point (pI)

66.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39370
fragaria_vesca	FvH4_7g20880
malus_domestica	MD07G1186600.v1.1
prunus_persica	Prupe.2G225400_v2.0.a1
pyrus_communis	pycom07g17790
rosa_chinensis	RchiOBHm_Chr1g0365131 RchiOBHm_Chr7g0221341
rosa_laevigata	RLG00000002159 RLG00000027439
rosa_multiflora	Rmu_sc0000324.1_g000026 Rmu_sc0001688.1_g000007
rosa_roxburghii	Rroxscaffold_2G00105470 Rroxscaffold_3G00238390 Rroxscaffold_4G00291400
rosa_rugosa	Rorug01G0320200
rosa_samantha	Rh1AG328800 Rh1BG290400 Rh1CG307100 Rh1DG322000 Rh2DG256000 Rh7AG341500 Rh7CG359400 Rh7DG340000
rosa_wichuraiana	Rw1G029180 Rw7G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	960
AciI	CCGC	1 cut(s)	662
AclWI	GGATC	1 cut(s)	526
AcoI	YGGCCR	3 cut(s)	3, 663, 792
AcsI	RAATTY	2 cut(s)	299, 687
AcuI	CTGAAG	3 cut(s)	468, 548, 923
AfiI	CCNNNNNNNGG	2 cut(s)	726, 1081
AjnI	CCWGG	2 cut(s)	396, 1037
AloI	GAACNNNNNNTCC	2 cut(s)	809, 841
Alw21I	GWGCWC	2 cut(s)	65, 98
Alw26I	GTCTC	3 cut(s)	558, 978, 1060
AlwI	GGATC	1 cut(s)	526
AlwNI	CAGNNNCTG	3 cut(s)	892, 901, 1086
Ama87I	CYCGRG	1 cut(s)	537
AoxI	GGCC	3 cut(s)	3, 663, 792
ApeKI	GCWGC	4 cut(s)	329, 599, 892, 1046
ApoI	RAATTY	2 cut(s)	299, 687
ArsI	GACNNNNNNTTYG	1 cut(s)	1059
AspLEI	GCGC	1 cut(s)	961
AspS9I	GGNCC	2 cut(s)	489, 1057
AsuC2I	CCSGG	2 cut(s)	538, 539
AsuHPI	GGTGA	1 cut(s)	372
AsuII	TTCGAA	1 cut(s)	294
AvaI	CYCGRG	1 cut(s)	537
AvaII	GGWCC	2 cut(s)	489, 1057
BalI	TGGCCA	1 cut(s)	794
BanII	GRGCYC	2 cut(s)	65, 98
BauI	CACGAG	1 cut(s)	724
Bbv12I	GWGCWC	2 cut(s)	65, 98
BbvI	GCAGC	4 cut(s)	316, 586, 879, 1058
BccI	CCATC	3 cut(s)	608, 752, 803
BcgI	CGANNNNNNTGC	2 cut(s)	968, 1002
BciT130I	CCWGG	2 cut(s)	398, 1039
BciVI	GTATCC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	10
BcnI	CCSGG	2 cut(s)	538, 539
BcoDI	GTCTC	3 cut(s)	558, 978, 1060
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	2 cut(s)	304, 893
BfuI	GTATCC	1 cut(s)	28
BisI	GCNGC	5 cut(s)	330, 600, 663, 893, 1047
BlsI	GCNGC	5 cut(s)	331, 601, 664, 894, 1048
Bme1390I	CCNGG	4 cut(s)	398, 538, 539, 1039
Bme18I	GGWCC	2 cut(s)	489, 1057
BmeT110I	CYCGRG	1 cut(s)	537
BmgT120I	GGNCC	2 cut(s)	489, 1057
BmrFI	CCNGG	4 cut(s)	398, 538, 539, 1039
BmrI	ACTGGG	1 cut(s)	524
BmsI	GCATC	1 cut(s)	899
BmuI	ACTGGG	1 cut(s)	524
BplI	GAGNNNNNCTC	6 cut(s)	85, 117, 142, 174, 146, 178
Bpu14I	TTCGAA	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	533
BpuMI	CCSGG	2 cut(s)	538, 539
BsaAI	YACGTR	1 cut(s)	16
BsaI	GGTCTC	1 cut(s)	1060
BsaJI	CCNNGG	1 cut(s)	537
BsaXI	ACNNNNNCTCC	6 cut(s)	340, 370, 609, 639, 881, 911
Bsc4I	CCNNNNNNNGG	2 cut(s)	726, 1081
Bse1I	ACTGG	2 cut(s)	519, 795
Bse3DI	GCAATG	1 cut(s)	961
BseBI	CCWGG	2 cut(s)	398, 1039
BseDI	CCNNGG	1 cut(s)	537
BseGI	GGATG	2 cut(s)	134, 714
BseLI	CCNNNNNNNGG	2 cut(s)	726, 1081
BseMI	GCAATG	1 cut(s)	961
BseMII	CTCAG	5 cut(s)	378, 591, 627, 899, 989
BseNI	ACTGG	2 cut(s)	519, 795
BseRI	GAGGAG	2 cut(s)	90, 742
BseXI	GCAGC	4 cut(s)	316, 586, 879, 1058
BseYI	CCCAGC	1 cut(s)	172
BshFI	GGCC	3 cut(s)	5, 665, 794
BsiHKAI	GWGCWC	2 cut(s)	65, 98
BsiHKCI	CYCGRG	1 cut(s)	537
BsiSI	CCGG	3 cut(s)	538, 706, 720
BslFI	GGGAC	1 cut(s)	895
BslI	CCNNNNNNNGG	2 cut(s)	726, 1081
BsmAI	GTCTC	3 cut(s)	558, 978, 1060
BsmFI	GGGAC	1 cut(s)	895
BsmI	GAATGC	1 cut(s)	613
BsnI	GGCC	3 cut(s)	5, 665, 794
Bso31I	GGTCTC	1 cut(s)	1060
BsoBI	CYCGRG	1 cut(s)	537
Bsp119I	TTCGAA	1 cut(s)	294
Bsp1286I	GDGCHC	2 cut(s)	65, 98
Bsp143I	GATC	4 cut(s)	10, 518, 747, 779
BspACI	CCGC	1 cut(s)	662
BspANI	GGCC	3 cut(s)	5, 665, 794
BspCNI	CTCAG	5 cut(s)	379, 590, 628, 898, 988
BspMAI	CTGCAG	1 cut(s)	897
BspPI	GGATC	1 cut(s)	526
BspQI	GCTCTTC	1 cut(s)	853
BspT104I	TTCGAA	1 cut(s)	294
BspTNI	GGTCTC	1 cut(s)	1060
BsrDI	GCAATG	1 cut(s)	961
BsrI	ACTGG	2 cut(s)	519, 795
BssECI	CCNNGG	1 cut(s)	537
BssMI	GATC	4 cut(s)	10, 518, 747, 779
BssSI	CACGAG	1 cut(s)	724
Bst2BI	CACGAG	1 cut(s)	724
Bst2UI	CCWGG	2 cut(s)	398, 1039
Bst4CI	ACNGT	3 cut(s)	590, 917, 1003
Bst6I	CTCTTC	4 cut(s)	417, 835, 853, 899
BstAPI	GCANNNNNTGC	1 cut(s)	599
BstBAI	YACGTR	1 cut(s)	16
BstBI	TTCGAA	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	968
BstDEI	CTNAG	6 cut(s)	387, 577, 603, 636, 885, 975
BstF5I	GGATG	2 cut(s)	134, 714
BstHHI	GCGC	1 cut(s)	961
BstKTI	GATC	4 cut(s)	13, 521, 750, 782
BstMAI	GTCTC	3 cut(s)	558, 978, 1060
BstMBI	GATC	4 cut(s)	10, 518, 747, 779
BstMWI	GCNNNNNNNGC	7 cut(s)	402, 539, 599, 608, 729, 967, 976
BstNI	CCWGG	2 cut(s)	398, 1039
BstSCI	CCNGG	4 cut(s)	396, 536, 537, 1037
BstSFI	CTRYAG	2 cut(s)	304, 893
BstV1I	GCAGC	4 cut(s)	316, 586, 879, 1058
BsuI	GTATCC	1 cut(s)	28
BsuRI	GGCC	3 cut(s)	5, 665, 794
BtsCI	GGATG	2 cut(s)	134, 714
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	4 cut(s)	324, 595, 788, 922
Cac8I	GCNNGC	1 cut(s)	968
CaiI	CAGNNNCTG	3 cut(s)	892, 901, 1086
CfoI	GCGC	1 cut(s)	961
Cfr13I	GGNCC	2 cut(s)	489, 1057
Cfr9I	CCCGGG	1 cut(s)	537
CviAII	CATG	4 cut(s)	29, 52, 91, 467
DdeI	CTNAG	6 cut(s)	387, 577, 603, 636, 885, 975
DpnI	GATC	4 cut(s)	12, 520, 749, 781
DpnII	GATC	4 cut(s)	10, 518, 747, 779
DraI	TTTAAA	1 cut(s)	630
EaeI	YGGCCR	3 cut(s)	3, 663, 792
Eam1104I	CTCTTC	4 cut(s)	417, 835, 853, 899
EarI	CTCTTC	4 cut(s)	417, 835, 853, 899
Ecl136II	GAGCTC	2 cut(s)	63, 96
Eco24I	GRGCYC	2 cut(s)	65, 98
Eco31I	GGTCTC	1 cut(s)	1060
Eco47I	GGWCC	2 cut(s)	489, 1057
Eco53kI	GAGCTC	2 cut(s)	63, 96
Eco57I	CTGAAG	3 cut(s)	468, 548, 923
Eco88I	CYCGRG	1 cut(s)	537
EcoICRI	GAGCTC	2 cut(s)	63, 96
EcoRI	GAATTC	1 cut(s)	299
EcoRII	CCWGG	2 cut(s)	396, 1037
EcoT38I	GRGCYC	2 cut(s)	65, 98
FaeI	CATG	4 cut(s)	32, 55, 94, 470
FaqI	GGGAC	1 cut(s)	895
FatI	CATG	4 cut(s)	28, 51, 90, 466
FbaI	TGATCA	1 cut(s)	10
Fnu4HI	GCNGC	5 cut(s)	330, 600, 663, 893, 1047
FokI	GGATG	2 cut(s)	121, 721
FriOI	GRGCYC	2 cut(s)	65, 98
Fsp4HI	GCNGC	5 cut(s)	330, 600, 663, 893, 1047
FspBI	CTAG	1 cut(s)	146
FspI	TGCGCA	1 cut(s)	960
GlaI	GCGC	1 cut(s)	960
GluI	GCNGC	5 cut(s)	330, 600, 663, 893, 1047
GsaI	CCCAGC	1 cut(s)	176
HaeIII	GGCC	3 cut(s)	5, 665, 794
HapII	CCGG	3 cut(s)	538, 706, 720
HhaI	GCGC	1 cut(s)	961
Hin1II	CATG	4 cut(s)	32, 55, 94, 470
Hin6I	GCGC	1 cut(s)	959
HinP1I	GCGC	1 cut(s)	959
HinfI	GANTC	3 cut(s)	365, 389, 883
HpaII	CCGG	3 cut(s)	538, 706, 720
HphI	GGTGA	1 cut(s)	372
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	6 cut(s)	388, 580, 637, 693, 903, 928
Hpy188III	TCNNGA	2 cut(s)	887, 993
Hpy8I	GTNNAC	1 cut(s)	230
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	5 cut(s)	215, 227, 393, 523, 652
HpyCH4III	ACNGT	3 cut(s)	590, 917, 1003
HpyCH4IV	ACGT	3 cut(s)	15, 824, 1028
HpyF10VI	GCNNNNNNNGC	7 cut(s)	402, 539, 599, 608, 729, 967, 976
HpyF3I	CTNAG	6 cut(s)	387, 577, 603, 636, 885, 975
HpySE526I	ACGT	3 cut(s)	15, 824, 1028
Hsp92II	CATG	4 cut(s)	32, 55, 94, 470
HspAI	GCGC	1 cut(s)	959
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	4 cut(s)	10, 518, 747, 779
LguI	GCTCTTC	1 cut(s)	853
LmnI	GCTCC	3 cut(s)	207, 729, 889
Lsp1109I	GCAGC	4 cut(s)	316, 586, 879, 1058
LweI	GCATC	1 cut(s)	899
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	3 cut(s)	15, 824, 1028
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	4 cut(s)	12, 520, 749, 781
MboI	GATC	4 cut(s)	10, 518, 747, 779
MboII	GAAGA	9 cut(s)	308, 434, 767, 789, 822, 840, 843, 849, 916
MfeI	CAATTG	1 cut(s)	954
MhlI	GDGCHC	2 cut(s)	65, 98
MlsI	TGGCCA	1 cut(s)	794
MluCI	AATT	5 cut(s)	299, 687, 930, 942, 954
MluNI	TGGCCA	1 cut(s)	794
MlyI	GAGTC	2 cut(s)	398, 877
Mox20I	TGGCCA	1 cut(s)	794
MscI	TGGCCA	1 cut(s)	794
MseI	TTAA	2 cut(s)	629, 644
MslI	CAYNNNNRTG	3 cut(s)	50, 56, 876
Msp20I	TGGCCA	1 cut(s)	794
MspA1I	CMGCKG	2 cut(s)	176, 599
MspI	CCGG	3 cut(s)	538, 706, 720
MspR9I	CCNGG	4 cut(s)	398, 538, 539, 1039
MunI	CAATTG	1 cut(s)	954
Mva1269I	GAATGC	1 cut(s)	613
MvaI	CCWGG	2 cut(s)	398, 1039
MwoI	GCNNNNNNNGC	7 cut(s)	402, 539, 599, 608, 729, 967, 976
NciI	CCSGG	2 cut(s)	538, 539
NdeII	GATC	4 cut(s)	10, 518, 747, 779
NlaIII	CATG	4 cut(s)	32, 55, 94, 470
NmuCI	GTSAC	1 cut(s)	23
NsbI	TGCGCA	1 cut(s)	960
NspV	TTCGAA	1 cut(s)	294
PciSI	GCTCTTC	1 cut(s)	853
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PctI	GAATGC	1 cut(s)	613
PfeI	GAWTC	1 cut(s)	365
PfoI	TCCNGGA	1 cut(s)	1037
PkrI	GCNGC	5 cut(s)	331, 601, 664, 894, 1048
PleI	GAGTC	2 cut(s)	397, 877
PpsI	GAGTC	2 cut(s)	397, 877
Ppu21I	YACGTR	1 cut(s)	16
Psp124BI	GAGCTC	2 cut(s)	65, 98
Psp6I	CCWGG	2 cut(s)	396, 1037
PspFI	CCCAGC	1 cut(s)	172
PspGI	CCWGG	2 cut(s)	396, 1037
PspPI	GGNCC	2 cut(s)	489, 1057
PstI	CTGCAG	1 cut(s)	897
PstNI	CAGNNNCTG	3 cut(s)	892, 901, 1086
PvuII	CAGCTG	2 cut(s)	176, 599
RseI	CAYNNNNRTG	3 cut(s)	50, 56, 876
SacI	GAGCTC	2 cut(s)	65, 98
SapI	GCTCTTC	1 cut(s)	853
SaqAI	TTAA	2 cut(s)	629, 644
SatI	GCNGC	5 cut(s)	330, 600, 663, 893, 1047
Sau3AI	GATC	4 cut(s)	10, 518, 747, 779
Sau96I	GGNCC	2 cut(s)	489, 1057
SchI	GAGTC	2 cut(s)	398, 877
ScrFI	CCNGG	4 cut(s)	398, 538, 539, 1039
SduI	GDGCHC	2 cut(s)	65, 98
SfaNI	GCATC	1 cut(s)	899
SfcI	CTRYAG	2 cut(s)	304, 893
SfuI	TTCGAA	1 cut(s)	294
SinI	GGWCC	2 cut(s)	489, 1057
SmaI	CCCGGG	1 cut(s)	539
SmiMI	CAYNNNNRTG	3 cut(s)	50, 56, 876
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	5 cut(s)	299, 687, 930, 942, 954
SsiI	CCGC	1 cut(s)	662
SspMI	CTAG	1 cut(s)	146
SstI	GAGCTC	2 cut(s)	65, 98
StyD4I	CCNGG	4 cut(s)	396, 536, 537, 1037
TaaI	ACNGT	3 cut(s)	590, 917, 1003
TaiI	ACGT	3 cut(s)	18, 827, 1031
TaqI	TCGA	3 cut(s)	48, 294, 809
TasI	AATT	5 cut(s)	299, 687, 930, 942, 954
TauI	GCSGC	1 cut(s)	665
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	2 cut(s)	629, 644
Tru9I	TTAA	2 cut(s)	629, 644
TscAI	CASTG	4 cut(s)	331, 595, 795, 922
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	4 cut(s)	329, 599, 892, 1046
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	5 cut(s)	335, 483, 822, 843, 849
TspMI	CCCGGG	1 cut(s)	537
TspRI	CASTG	4 cut(s)	331, 595, 795, 922
VpaK11BI	GGWCC	2 cut(s)	489, 1057
XapI	RAATTY	2 cut(s)	299, 687
XcmI	CCANNNNNNNNNTGG	1 cut(s)	483
XmaI	CCCGGG	1 cut(s)	537
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.