Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007268

Physical Location & Seq

Genomic Coordinates Reverse (-)

28883887 .. 28887848

Gene Structure 3962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00105470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGGGGAAAGTGATTCTTTGGGGATTGCCATCTCCACAACACCGTTCTTCAATTCGTCTTCGGTGACCTTCGCTTATCGCCTCCTTCTTCAATCTCTTACAGTTCACAATCACCGAAAGCTCATTCGGCCTTCCCGACTCGGGTCCGACCCAACGAACGAGGAGACCTCCGCCCGAGCTATTGCAAAGGTCAATTTGCACTTCGGCCCCGTCGTTCACCGGCGGGATGCTCTACATGCGAACGACCTTAACATGGCCGCCGTGTCCCTCACCAACCAGCTCCGCGACCTAGACCCGTTGCTCAAATCGGCGTGCTCCACCGGTCAAACGCCACGTCCACCGCCTCGCCCTCGCCACCGCAAACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

13.52

Weight (kDa)

11.08

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39370
fragaria_vesca	FvH4_7g20880
malus_domestica	MD07G1186600.v1.1
prunus_persica	Prupe.2G225400_v2.0.a1
pyrus_communis	pycom07g17790
rosa_chinensis	RchiOBHm_Chr1g0365131 RchiOBHm_Chr7g0221341
rosa_laevigata	RLG00000002159 RLG00000027439
rosa_multiflora	Rmu_sc0000324.1_g000026 Rmu_sc0001688.1_g000007
rosa_roxburghii	Rroxscaffold_2G00105470 Rroxscaffold_3G00238390 Rroxscaffold_4G00291400
rosa_rugosa	Rorug01G0320200
rosa_samantha	Rh1AG328800 Rh1BG290400 Rh1CG307100 Rh1DG322000 Rh2DG256000 Rh7AG341500 Rh7CG359400 Rh7DG340000
rosa_wichuraiana	Rw1G029180 Rw7G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	285
AciI	CCGC	6 cut(s)	171, 223, 258, 283, 341, 358
AcoI	YGGCCR	1 cut(s)	255
AfiI	CCNNNNNNNGG	2 cut(s)	141, 253
AgeI	ACCGGT	1 cut(s)	320
AgsI	TTSAA	2 cut(s)	52, 92
AjiI	CACGTC	1 cut(s)	335
AluBI	AGCT	3 cut(s)	121, 179, 280
AluI	AGCT	3 cut(s)	121, 179, 280
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	1 cut(s)	158
Ama87I	CYCGRG	2 cut(s)	140, 174
AoxI	GGCC	3 cut(s)	128, 205, 255
ArsI	GACNNNNNNTTYG	2 cut(s)	319, 351
AsiGI	ACCGGT	1 cut(s)	320
AspS9I	GGNCC	2 cut(s)	144, 206
AsuHPI	GGTGA	4 cut(s)	76, 104, 209, 262
AvaI	CYCGRG	2 cut(s)	140, 174
AvaII	GGWCC	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	317
BccI	CCATC	1 cut(s)	38
BceAI	ACGGC	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	1 cut(s)	290
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme18I	GGWCC	1 cut(s)	144
BmeT110I	CYCGRG	2 cut(s)	140, 174
BmgBI	CACGTC	1 cut(s)	335
BmgT120I	GGNCC	2 cut(s)	144, 206
BmiI	GGNNCC	2 cut(s)	145, 208
BmsI	GCATC	1 cut(s)	217
BoxI	GACNNNNGTC	1 cut(s)	142
BpiI	GAAGAC	1 cut(s)	51
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BsaBI	GATNNNNATC	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	158
BsaWI	WCCGGW	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 253
Bse118I	RCCGGY	2 cut(s)	219, 320
Bse8I	GATNNNNATC	1 cut(s)	29
BseGI	GGATG	1 cut(s)	232
BseJI	GATNNNNATC	1 cut(s)	29
BseLI	CCNNNNNNNGG	2 cut(s)	141, 253
BseRI	GAGGAG	1 cut(s)	176
Bsh1236I	CGCG	1 cut(s)	285
BshFI	GGCC	3 cut(s)	130, 207, 257
BshTI	ACCGGT	1 cut(s)	320
BsiHKAI	GWGCWC	1 cut(s)	317
BsiHKCI	CYCGRG	2 cut(s)	140, 174
BsiSI	CCGG	2 cut(s)	220, 321
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	2 cut(s)	141, 253
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	250
BsnI	GGCC	3 cut(s)	130, 207, 257
Bso31I	GGTCTC	1 cut(s)	158
BsoBI	CYCGRG	2 cut(s)	140, 174
Bsp1286I	GDGCHC	1 cut(s)	317
BspACI	CCGC	6 cut(s)	171, 223, 258, 283, 341, 358
BspANI	GGCC	3 cut(s)	130, 207, 257
BspFNI	CGCG	1 cut(s)	285
BspLI	GGNNCC	2 cut(s)	145, 208
BspTNI	GGTCTC	1 cut(s)	158
BsrFI	RCCGGY	2 cut(s)	219, 320
BssAI	RCCGGY	2 cut(s)	219, 320
Bst4CI	ACNGT	2 cut(s)	45, 103
BstC8I	GCNNGC	1 cut(s)	313
BstEII	GGTNACC	1 cut(s)	64
BstF5I	GGATG	1 cut(s)	232
BstFNI	CGCG	1 cut(s)	285
BstMAI	GTCTC	1 cut(s)	158
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 236
BstNSI	RCATGY	1 cut(s)	239
BstPAI	GACNNNNGTC	1 cut(s)	142
BstPI	GGTNACC	1 cut(s)	64
BstUI	CGCG	1 cut(s)	285
BstV2I	GAAGAC	1 cut(s)	51
BsuRI	GGCC	3 cut(s)	130, 207, 257
BtrI	CACGTC	1 cut(s)	335
BtsCI	GGATG	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	313
Cfr10I	RCCGGY	2 cut(s)	219, 320
Cfr13I	GGNCC	2 cut(s)	144, 206
CspAI	ACCGGT	1 cut(s)	320
CviAII	CATG	2 cut(s)	236, 253
CviJI	RGCY	6 cut(s)	121, 130, 179, 207, 257, 280
CviKI_1	RGCY	6 cut(s)	121, 130, 179, 207, 257, 280
EaeI	YGGCCR	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	160
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	144
Eco88I	CYCGRG	2 cut(s)	140, 174
Eco91I	GGTNACC	1 cut(s)	64
EcoO65I	GGTNACC	1 cut(s)	64
FaeI	CATG	2 cut(s)	239, 256
FaiI	YATR	2 cut(s)	237, 254
FalI	AAGNNNNNCTT	1 cut(s)	33
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	2 cut(s)	235, 252
FauI	CCCGC	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	1 cut(s)	290
GluI	GCNGC	1 cut(s)	258
HaeIII	GGCC	3 cut(s)	130, 207, 257
HapII	CCGG	2 cut(s)	220, 321
Hin1II	CATG	2 cut(s)	239, 256
HinfI	GANTC	2 cut(s)	14, 138
HpaII	CCGG	2 cut(s)	220, 321
HphI	GGTGA	4 cut(s)	76, 104, 209, 262
Hpy166II	GTNNAC	3 cut(s)	106, 217, 338
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	1 cut(s)	135
Hpy8I	GTNNAC	3 cut(s)	106, 217, 338
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	3 cut(s)	79, 95, 141
HpyCH4III	ACNGT	2 cut(s)	45, 103
HpyCH4IV	ACGT	1 cut(s)	334
HpyCH4V	TGCA	2 cut(s)	185, 199
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 236
HpySE526I	ACGT	1 cut(s)	334
Hsp92II	CATG	2 cut(s)	239, 256
LmnI	GCTCC	2 cut(s)	285, 320
LpnPI	CCDG	3 cut(s)	233, 290, 334
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	1 cut(s)	334
MaeIII	GTNAC	1 cut(s)	64
MboII	GAAGA	3 cut(s)	40, 51, 80
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	2 cut(s)	52, 193
MlyI	GAGTC	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	6 cut(s)	92, 154, 178, 278, 354, 360
MseI	TTAA	1 cut(s)	249
MspI	CCGG	2 cut(s)	220, 321
MvnI	CGCG	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	127, 236
NlaIII	CATG	2 cut(s)	239, 256
NlaIV	GGNNCC	2 cut(s)	145, 208
NmuCI	GTSAC	1 cut(s)	64
NspI	RCATGY	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	2 cut(s)	133, 210
PfeI	GAWTC	1 cut(s)	14
PinAI	ACCGGT	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	132
PshAI	GACNNNNGTC	1 cut(s)	142
PspEI	GGTNACC	1 cut(s)	64
PspN4I	GGNNCC	2 cut(s)	145, 208
PspPI	GGNCC	2 cut(s)	144, 206
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	1 cut(s)	258
Sau96I	GGNCC	2 cut(s)	144, 206
SchI	GAGTC	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	9 cut(s)	71, 123, 170, 181, 192, 249, 282, 291, 337
SfaNI	GCATC	1 cut(s)	217
SgrAI	CRCCGGYG	1 cut(s)	219
SinI	GGWCC	1 cut(s)	144
Sse9I	AATT	2 cut(s)	52, 193
SsiI	CCGC	6 cut(s)	171, 223, 258, 283, 341, 358
SspMI	CTAG	1 cut(s)	290
TaaI	ACNGT	2 cut(s)	45, 103
TaiI	ACGT	1 cut(s)	337
TasI	AATT	2 cut(s)	52, 193
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TseFI	GTSAC	1 cut(s)	64
Tsp45I	GTSAC	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	144
XceI	RCATGY	1 cut(s)	239
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.