Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007268

Physical Location & Seq

Genomic Coordinates Forward (+)

26531931 .. 26533060

Gene Structure 1130 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002159

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCTGTTGACCACTTATCCTATGATCCTTCAGAAGATGACTACATAGACATGGAAGTCGGTTCATACTCCGCCTTATTCTCCCATTCTATGAGCTCTCCTCCACACCCCAGAGAGTTTGAGTTTCAAATGTCATCAAGCTCACTAGAAATAGAGCCCTCAACTACTTCACCAGCTGATGAGATTTTCTACAAAGGAAAGCTCCTTCCTCTTCACCTCCCACTGTGTTTACAAATGGTCGAAAAACTACTCCAAAACTCCACTTCGTGCTTTGACCATAACCCCAAAGATAGATTTGAAGAGTTCTATAGCACCCCATTAGCCACTACTGCCACAACTCCAACAACAATGAGTACCCCATTTGAGTCCTGCAACATCTCACCTTCGGAGTCTTGTCAATACTCCTCACTTGGGTCTAAGCTCAAGGCTTCAAGGGCTTATCTCAAGTCCTTGTTTAGCAAAACTGGTTGCTCCAATGAGTCCAGTGCTCTAGCAGCTGCTAAGAATGCAGATGAAGGAATGGTTATGAAATCCGAGGACTTGAGTAAGTACACGGAGGCGGGGAAGAAAAACCCATTTGGACAAATTCAGAAGGATAAATATAGAATGTCTGCTTCTGGCATGAGAAGCTTCAACAAAGACAAGATCACTGAGAATGGTGCTGGTCTTCACAGAAGGTCGTTTTCATTAGCTATCAAGCGACATTCTACAACGGACTCTACTTCACCATCCTCCTCCTCATCATCATCATCAGCTTCTTCTTCATTTTCATGTTCAAACCTTTCAAATGGGACTCAGGAGCCGAAGTTTCTGAAGAGATGCAACAGTGCAAATTCAGAAATGGAGAGTTCAATTCAAGGGGCCATTGCGCATTGCAGGCAATCTCAGCAAACACTTCGTTCGAGAAAGACTGCGAGTGAAGTTGGGTTTTACTCATTGTCAACATCACTGTCAGCTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

321

Amino Acids

34.95

Weight (kDa)

6.71

Isoelectric Point (pI)

69.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39370
fragaria_vesca	FvH4_7g20880
malus_domestica	MD07G1186600.v1.1
prunus_persica	Prupe.2G225400_v2.0.a1
pyrus_communis	pycom07g17790
rosa_chinensis	RchiOBHm_Chr1g0365131 RchiOBHm_Chr7g0221341
rosa_laevigata	RLG00000002159 RLG00000027439
rosa_multiflora	Rmu_sc0000324.1_g000026 Rmu_sc0001688.1_g000007
rosa_roxburghii	Rroxscaffold_2G00105470 Rroxscaffold_3G00238390 Rroxscaffold_4G00291400
rosa_rugosa	Rorug01G0320200
rosa_samantha	Rh1AG328800 Rh1BG290400 Rh1CG307100 Rh1DG322000 Rh2DG256000 Rh7AG341500 Rh7CG359400 Rh7DG340000
rosa_wichuraiana	Rw1G029180 Rw7G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
Acc16I	TGCGCA	1 cut(s)	870
AciI	CCGC	2 cut(s)	72, 560
AclWI	GGATC	1 cut(s)	20
AcsI	RAATTY	2 cut(s)	585, 832
AcuI	CTGAAG	2 cut(s)	15, 833
AdeI	CACNNNGTG	1 cut(s)	267
AfaI	GTAC	2 cut(s)	355, 551
AfiI	CCNNNNNNNGG	1 cut(s)	411
AgsI	TTSAA	8 cut(s)	128, 299, 432, 634, 777, 786, 852, 857
Alw21I	GWGCWC	2 cut(s)	98, 490
AlwI	GGATC	1 cut(s)	20
AoxI	GGCC	1 cut(s)	861
ApeKI	GCWGC	2 cut(s)	494, 497
ApoI	RAATTY	2 cut(s)	585, 832
AspLEI	GCGC	1 cut(s)	871
AspS9I	GGNCC	1 cut(s)	861
AsuHPI	GGTGA	4 cut(s)	162, 206, 372, 717
BanII	GRGCYC	2 cut(s)	98, 159
BbsI	GAAGAC	1 cut(s)	659
Bbv12I	GWGCWC	2 cut(s)	98, 490
BbvI	GCAGC	2 cut(s)	484, 506
BccI	CCATC	1 cut(s)	736
BcgI	CGANNNNNNTGC	2 cut(s)	878, 912
BfaI	CTAG	2 cut(s)	146, 491
BfmI	CTRYAG	1 cut(s)	307
BisI	GCNGC	2 cut(s)	495, 498
BlsI	GCNGC	2 cut(s)	496, 499
BmgT120I	GGNCC	1 cut(s)	861
BmiI	GGNNCC	2 cut(s)	801, 862
BmsI	GCATC	1 cut(s)	809
BpiI	GAAGAC	1 cut(s)	659
BplI	GAGNNNNNCTC	2 cut(s)	85, 117
BpuEI	CTTGAG	3 cut(s)	407, 428, 562
BsaJI	CCNNGG	1 cut(s)	534
BsaXI	ACNNNNNCTCC	2 cut(s)	791, 821
Bsc4I	CCNNNNNNNGG	1 cut(s)	411
Bse1I	ACTGG	2 cut(s)	469, 483
Bse3DI	GCAATG	2 cut(s)	864, 871
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	1 cut(s)	728
BseLI	CCNNNNNNNGG	1 cut(s)	411
BseMI	GCAATG	2 cut(s)	864, 871
BseMII	CTCAG	3 cut(s)	642, 809, 899
BseNI	ACTGG	2 cut(s)	469, 483
BseRI	GAGGAG	4 cut(s)	90, 394, 724, 727
BseXI	GCAGC	2 cut(s)	484, 506
BshFI	GGCC	1 cut(s)	863
BsiHKAI	GWGCWC	2 cut(s)	98, 490
BslFI	GGGAC	1 cut(s)	805
BslI	CCNNNNNNNGG	1 cut(s)	411
BsmFI	GGGAC	1 cut(s)	805
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	1 cut(s)	863
Bsp1286I	GDGCHC	3 cut(s)	98, 159, 490
Bsp143I	GATC	2 cut(s)	25, 645
BspACI	CCGC	2 cut(s)	72, 560
BspANI	GGCC	1 cut(s)	863
BspCNI	CTCAG	3 cut(s)	643, 808, 898
BspLI	GGNNCC	2 cut(s)	801, 862
BspPI	GGATC	1 cut(s)	20
BsrDI	GCAATG	2 cut(s)	864, 871
BsrI	ACTGG	2 cut(s)	469, 483
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	2 cut(s)	25, 645
Bst4CI	ACNGT	3 cut(s)	225, 827, 951
Bst6I	CTCTTC	3 cut(s)	216, 294, 809
BstC8I	GCNNGC	2 cut(s)	878, 958
BstDEI	CTNAG	5 cut(s)	417, 501, 651, 795, 885
BstF5I	GGATG	1 cut(s)	728
BstHHI	GCGC	1 cut(s)	871
BstKTI	GATC	2 cut(s)	28, 648
BstMBI	GATC	2 cut(s)	25, 645
BstMWI	GCNNNNNNNGC	7 cut(s)	329, 434, 494, 506, 627, 877, 886
BstSFI	CTRYAG	1 cut(s)	307
BstV1I	GCAGC	2 cut(s)	484, 506
BstV2I	GAAGAC	1 cut(s)	659
BsuRI	GGCC	1 cut(s)	863
BtsCI	GGATG	1 cut(s)	728
BtsIMutI	CAGTG	5 cut(s)	221, 490, 648, 832, 947
Cac8I	GCNNGC	2 cut(s)	878, 958
CfoI	GCGC	1 cut(s)	871
Cfr13I	GGNCC	1 cut(s)	861
Csp6I	GTAC	2 cut(s)	354, 550
CviAII	CATG	3 cut(s)	52, 622, 771
CviQI	GTAC	2 cut(s)	354, 550
DdeI	CTNAG	5 cut(s)	417, 501, 651, 795, 885
DpnI	GATC	2 cut(s)	27, 647
DpnII	GATC	2 cut(s)	25, 645
DraIII	CACNNNGTG	1 cut(s)	267
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eam1104I	CTCTTC	3 cut(s)	216, 294, 809
EarI	CTCTTC	3 cut(s)	216, 294, 809
EciI	GGCGGA	1 cut(s)	61
Ecl136II	GAGCTC	1 cut(s)	96
Eco24I	GRGCYC	2 cut(s)	98, 159
Eco53kI	GAGCTC	1 cut(s)	96
Eco57I	CTGAAG	2 cut(s)	15, 833
EcoICRI	GAGCTC	1 cut(s)	96
EcoT38I	GRGCYC	2 cut(s)	98, 159
FaeI	CATG	3 cut(s)	55, 625, 774
FaqI	GGGAC	1 cut(s)	805
FatI	CATG	3 cut(s)	51, 621, 770
FauI	CCCGC	1 cut(s)	553
Fnu4HI	GCNGC	2 cut(s)	495, 498
FokI	GGATG	1 cut(s)	715
FriOI	GRGCYC	2 cut(s)	98, 159
Fsp4HI	GCNGC	2 cut(s)	495, 498
FspBI	CTAG	2 cut(s)	146, 491
FspI	TGCGCA	1 cut(s)	870
GlaI	GCGC	1 cut(s)	870
GluI	GCNGC	2 cut(s)	495, 498
HaeIII	GGCC	1 cut(s)	863
HhaI	GCGC	1 cut(s)	871
Hin1II	CATG	3 cut(s)	55, 625, 774
Hin6I	GCGC	1 cut(s)	869
HinP1I	GCGC	1 cut(s)	869
HincII	GTYRAC	2 cut(s)	10, 942
HindII	GTYRAC	2 cut(s)	10, 942
HindIII	AAGCTT	1 cut(s)	628
HinfI	GANTC	5 cut(s)	365, 389, 479, 716, 793
HphI	GGTGA	4 cut(s)	162, 206, 372, 717
Hpy166II	GTNNAC	4 cut(s)	10, 230, 552, 942
Hpy188I	TCNGA	6 cut(s)	34, 388, 535, 591, 813, 838
Hpy188III	TCNNGA	2 cut(s)	797, 903
Hpy8I	GTNNAC	4 cut(s)	10, 230, 552, 942
HpyAV	CCTTC	6 cut(s)	39, 215, 393, 509, 586, 669
HpyCH4III	ACNGT	3 cut(s)	225, 827, 951
HpyCH4V	TGCA	5 cut(s)	372, 509, 822, 830, 876
HpyF10VI	GCNNNNNNNGC	7 cut(s)	329, 434, 494, 506, 627, 877, 886
HpyF3I	CTNAG	5 cut(s)	417, 501, 651, 795, 885
Hsp92II	CATG	3 cut(s)	55, 625, 774
HspAI	GCGC	1 cut(s)	869
Kzo9I	GATC	2 cut(s)	25, 645
LmnI	GCTCC	3 cut(s)	207, 476, 799
LpnPI	CCDG	9 cut(s)	124, 186, 382, 450, 496, 603, 648, 782, 862
Lsp1109I	GCAGC	2 cut(s)	484, 506
LweI	GCATC	1 cut(s)	809
MaeI	CTAG	2 cut(s)	146, 491
MalI	GATC	2 cut(s)	27, 647
MboI	GATC	2 cut(s)	25, 645
MboII	GAAGA	8 cut(s)	47, 203, 311, 577, 659, 750, 753, 826
MhlI	GDGCHC	3 cut(s)	98, 159, 490
MluCI	AATT	3 cut(s)	585, 832, 852
MlyI	GAGTC	5 cut(s)	374, 398, 488, 710, 787
MmeI	TCCRAC	1 cut(s)	365
MslI	CAYNNNNRTG	2 cut(s)	50, 769
MspA1I	CMGCKG	2 cut(s)	176, 497
Mva1269I	GAATGC	1 cut(s)	511
MwoI	GCNNNNNNNGC	7 cut(s)	329, 434, 494, 506, 627, 877, 886
NdeII	GATC	2 cut(s)	25, 645
NlaIII	CATG	3 cut(s)	55, 625, 774
NlaIV	GGNNCC	2 cut(s)	801, 862
NsbI	TGCGCA	1 cut(s)	870
PctI	GAATGC	1 cut(s)	511
PkrI	GCNGC	2 cut(s)	496, 499
PleI	GAGTC	5 cut(s)	373, 397, 487, 710, 787
PpsI	GAGTC	5 cut(s)	373, 397, 487, 710, 787
Psp124BI	GAGCTC	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	801, 862
PspPI	GGNCC	1 cut(s)	861
PvuII	CAGCTG	2 cut(s)	176, 497
RsaI	GTAC	2 cut(s)	355, 551
RsaNI	GTAC	2 cut(s)	354, 550
RseI	CAYNNNNRTG	2 cut(s)	50, 769
SacI	GAGCTC	1 cut(s)	98
SatI	GCNGC	2 cut(s)	495, 498
Sau3AI	GATC	2 cut(s)	25, 645
Sau96I	GGNCC	1 cut(s)	861
SchI	GAGTC	5 cut(s)	374, 398, 488, 710, 787
SduI	GDGCHC	3 cut(s)	98, 159, 490
SfaNI	GCATC	1 cut(s)	809
SfcI	CTRYAG	1 cut(s)	307
SmiMI	CAYNNNNRTG	2 cut(s)	50, 769
SmlI	CTYRAG	3 cut(s)	422, 443, 541
SmoI	CTYRAG	3 cut(s)	422, 443, 541
Sse9I	AATT	3 cut(s)	585, 832, 852
SsiI	CCGC	2 cut(s)	72, 560
SspMI	CTAG	2 cut(s)	146, 491
SstI	GAGCTC	1 cut(s)	98
TaaI	ACNGT	3 cut(s)	225, 827, 951
TaqI	TCGA	2 cut(s)	240, 902
TasI	AATT	3 cut(s)	585, 832, 852
TatI	WGTACW	1 cut(s)	549
TscAI	CASTG	5 cut(s)	228, 490, 655, 832, 954
TseI	GCWGC	2 cut(s)	494, 497
TspDTI	ATGAA	6 cut(s)	54, 528, 542, 675, 753, 759
TspGWI	ACGGA	2 cut(s)	569, 728
TspRI	CASTG	5 cut(s)	228, 490, 655, 832, 954
XapI	RAATTY	2 cut(s)	585, 832
XspI	CTAG	2 cut(s)	146, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.