Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007268

Physical Location & Seq

Genomic Coordinates Forward (+)

16874678 .. 16876188

Gene Structure 1511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g20880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGCTATTGACCACTTAACCTATGATCCTTCAGAAGATGACTACATAGACATGGAAGTCGGTTCATACTCCGCCCTCTTCTCCCACTCCATGAGCTCTCCTCCACACCCAAGAGAGTTTGAGTTTCAAATGTCATCAAGCTCACTAGAACTAGAGCCTTCAACCACTTCACCAGCTGATGAGCTTTTCTACAAAGGAAAGCTCCTTCCTCTTCACCTCCCACCGCGTTTACAAATGGTCGAAAAACTACTCCAAAACTCCACTTCTTGCTTTGATCATAAGCCAAAAGATAGATTTGAAGAGTTCTATAGCACCCCATTAGGCACTGCTGTCACTACTCCAACATCAATGAGTACCCCTTTTGAATCCTGCAACATCTCACCTGCAGACTCTTGTCAAGTTAGCAGAGAGCTGAGCCGGGATGAGTATATATTCGAGTATGCAACTGAAGGGAGTGGATTTGGATATGTAAATGAAAACTCCAAAAAATCTTGGACCAAAAAGTTGAAGCAGTATTCCTCACTTGGGTCTAAGTTCAAGGCTTCAAGGGCTTATCTCAAGTCCTTGTTTGGCAAAACTGGTTGCTCTAACGAGTCCAGTGCTGTAGCAGCTTCTAAGAATGCAGATGAAGGAATGGTTATGAAATCCGAGGACTTGAGTAAGTACGCAAAGATGGGAAAGAAAAATCCATTTGGACAGATTCAGAAGGATAAATATAGAATGTCTGCTTCTGGCATGAGGAGCTTCAACAAAGAAAAGATCACTGAGAATGGTGCTGGTCTACACAGAAGGTCATTTTCCTTAGCTATCAAGCGGCATTCAACAAAGAACTCTACTTCGCCATCCTCCTCATCCTCTTCCTCATCATCGTCAGCTTCTTCTTCATCTTCATGTTCAAATCATTCAAAAGGAACTCAGGAGCCAAAGTTTCTGAAGAGATGCAACAGTGCGAATTCAGAAATGGAGAGTTCAATTCAGGGGGCCATTGCACATTGCAAGCAATCTCAGCAAACACTTCGTTCGAGAAAGACTGCGAGTGAAGTTGGGTTTTACTCATTGCCAACATCACTGTCACCTTGTGAGGACAAAGAAGGGCCAGACCTTTGCAGGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

372

Amino Acids

40.86

Weight (kDa)

8.57

Isoelectric Point (pI)

63.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39370
fragaria_vesca	FvH4_7g20880
malus_domestica	MD07G1186600.v1.1
prunus_persica	Prupe.2G225400_v2.0.a1
pyrus_communis	pycom07g17790
rosa_chinensis	RchiOBHm_Chr1g0365131 RchiOBHm_Chr7g0221341
rosa_laevigata	RLG00000002159 RLG00000027439
rosa_multiflora	Rmu_sc0000324.1_g000026 Rmu_sc0001688.1_g000007
rosa_roxburghii	Rroxscaffold_2G00105470 Rroxscaffold_3G00238390 Rroxscaffold_4G00291400
rosa_rugosa	Rorug01G0320200
rosa_samantha	Rh1AG328800 Rh1BG290400 Rh1CG307100 Rh1DG322000 Rh2DG256000 Rh7AG341500 Rh7CG359400 Rh7DG340000
rosa_wichuraiana	Rw1G029180 Rw7G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	391
AasI	GACNNNNNNGTC	1 cut(s)	56
Acc36I	ACCTGC	1 cut(s)	391
AccI	GTMKAC	1 cut(s)	781
AccII	CGCG	1 cut(s)	226
AciI	CCGC	3 cut(s)	72, 224, 814
AclWI	GGATC	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	952
AcuI	CTGAAG	3 cut(s)	15, 468, 953
AdeI	CACNNNGTG	1 cut(s)	1079
AfaI	GTAC	2 cut(s)	355, 665
AfiI	CCNNNNNNNGG	2 cut(s)	525, 1108
Alw21I	GWGCWC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	20
AoxI	GGCC	2 cut(s)	981, 1094
ApeKI	GCWGC	1 cut(s)	608
ApoI	RAATTY	1 cut(s)	952
AspS9I	GGNCC	3 cut(s)	495, 981, 1094
AsuC2I	CCSGG	1 cut(s)	419
AsuHPI	GGTGA	4 cut(s)	162, 206, 372, 1065
AvaII	GGWCC	1 cut(s)	495
BanII	GRGCYC	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	620
BccI	CCATC	2 cut(s)	667, 850
BcgI	CGANNNNNNTGC	4 cut(s)	581, 615, 998, 1032
BclI	TGATCA	1 cut(s)	274
BcnI	CCSGG	1 cut(s)	419
BfaI	CTAG	2 cut(s)	146, 152
BfmI	CTRYAG	3 cut(s)	307, 384, 603
BfuAI	ACCTGC	1 cut(s)	391
BisI	GCNGC	2 cut(s)	609, 815
BlpI	GCTNAGC	1 cut(s)	413
BlsI	GCNGC	2 cut(s)	610, 816
Bme1390I	CCNGG	1 cut(s)	419
Bme18I	GGWCC	1 cut(s)	495
BmgT120I	GGNCC	3 cut(s)	495, 981, 1094
BmiI	GGNNCC	2 cut(s)	921, 982
BmrFI	CCNGG	1 cut(s)	419
BmsI	GCATC	1 cut(s)	929
BoxI	GACNNNNGTC	1 cut(s)	393
BplI	GAGNNNNNCTC	2 cut(s)	85, 117
Bpu10I	CCTNAGC	1 cut(s)	802
Bpu1102I	GCTNAGC	1 cut(s)	413
BpuEI	CTTGAG	2 cut(s)	542, 676
BpuMI	CCSGG	1 cut(s)	419
BsaJI	CCNNGG	1 cut(s)	648
BsaXI	ACNNNNNCTCC	2 cut(s)	911, 941
Bsc4I	CCNNNNNNNGG	2 cut(s)	525, 1108
Bse1I	ACTGG	2 cut(s)	583, 597
Bse3DI	GCAATG	3 cut(s)	984, 991, 1055
BseDI	CCNNGG	1 cut(s)	648
BseGI	GGATG	3 cut(s)	427, 842, 851
BseLI	CCNNNNNNNGG	2 cut(s)	525, 1108
BseMI	GCAATG	3 cut(s)	984, 991, 1055
BseMII	CTCAG	4 cut(s)	404, 756, 929, 1019
BseNI	ACTGG	2 cut(s)	583, 597
BseRI	GAGGAG	3 cut(s)	90, 754, 838
BseXI	GCAGC	1 cut(s)	620
Bsh1236I	CGCG	1 cut(s)	226
BshFI	GGCC	2 cut(s)	983, 1096
BsiHKAI	GWGCWC	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	418
BslI	CCNNNNNNNGG	2 cut(s)	525, 1108
BsmI	GAATGC	2 cut(s)	625, 817
BsnI	GGCC	2 cut(s)	983, 1096
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp143I	GATC	3 cut(s)	25, 274, 759
Bsp1720I	GCTNAGC	1 cut(s)	413
BspACI	CCGC	3 cut(s)	72, 224, 814
BspANI	GGCC	2 cut(s)	983, 1096
BspCNI	CTCAG	4 cut(s)	405, 757, 928, 1018
BspFNI	CGCG	1 cut(s)	226
BspLI	GGNNCC	2 cut(s)	921, 982
BspMAI	CTGCAG	1 cut(s)	388
BspMI	ACCTGC	1 cut(s)	391
BspPI	GGATC	1 cut(s)	20
BsrDI	GCAATG	3 cut(s)	984, 991, 1055
BsrI	ACTGG	2 cut(s)	583, 597
BssECI	CCNNGG	1 cut(s)	648
BssMI	GATC	3 cut(s)	25, 274, 759
Bst4CI	ACNGT	2 cut(s)	947, 1071
Bst6I	CTCTTC	5 cut(s)	83, 216, 294, 862, 929
BstC8I	GCNNGC	1 cut(s)	998
BstDEI	CTNAG	7 cut(s)	413, 531, 615, 765, 802, 915, 1005
BstF5I	GGATG	3 cut(s)	427, 842, 851
BstFNI	CGCG	1 cut(s)	226
BstKTI	GATC	3 cut(s)	28, 277, 762
BstMBI	GATC	3 cut(s)	25, 274, 759
BstMWI	GCNNNNNNNGC	4 cut(s)	548, 608, 741, 1006
BstPAI	GACNNNNGTC	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	417
BstSFI	CTRYAG	3 cut(s)	307, 384, 603
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	620
BsuRI	GGCC	2 cut(s)	983, 1096
BtsCI	GGATG	3 cut(s)	427, 842, 851
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	5 cut(s)	324, 604, 762, 952, 1067
BveI	ACCTGC	1 cut(s)	391
Cac8I	GCNNGC	1 cut(s)	998
Cfr13I	GGNCC	3 cut(s)	495, 981, 1094
Csp6I	GTAC	2 cut(s)	354, 664
CviAII	CATG	4 cut(s)	52, 91, 736, 891
CviQI	GTAC	2 cut(s)	354, 664
DdeI	CTNAG	7 cut(s)	413, 531, 615, 765, 802, 915, 1005
DpnI	GATC	3 cut(s)	27, 276, 761
DpnII	GATC	3 cut(s)	25, 274, 759
DraIII	CACNNNGTG	1 cut(s)	1079
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eam1104I	CTCTTC	5 cut(s)	83, 216, 294, 862, 929
EarI	CTCTTC	5 cut(s)	83, 216, 294, 862, 929
EciI	GGCGGA	1 cut(s)	61
Ecl136II	GAGCTC	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	495
Eco53kI	GAGCTC	1 cut(s)	96
Eco57I	CTGAAG	3 cut(s)	15, 468, 953
EcoICRI	GAGCTC	1 cut(s)	96
EcoRI	GAATTC	1 cut(s)	952
EcoT38I	GRGCYC	1 cut(s)	98
FaeI	CATG	4 cut(s)	55, 94, 739, 894
FatI	CATG	4 cut(s)	51, 90, 735, 890
FbaI	TGATCA	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	781
Fnu4HI	GCNGC	2 cut(s)	609, 815
FokI	GGATG	3 cut(s)	434, 829, 838
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	2 cut(s)	609, 815
FspBI	CTAG	2 cut(s)	146, 152
GluI	GCNGC	2 cut(s)	609, 815
HaeIII	GGCC	2 cut(s)	983, 1096
HapII	CCGG	1 cut(s)	418
Hin1II	CATG	4 cut(s)	55, 94, 739, 894
HinfI	GANTC	4 cut(s)	365, 389, 593, 700
HpaII	CCGG	1 cut(s)	418
HphI	GGTGA	4 cut(s)	162, 206, 372, 1065
Hpy166II	GTNNAC	2 cut(s)	230, 782
Hpy188I	TCNGA	5 cut(s)	34, 649, 705, 933, 958
Hpy188III	TCNNGA	2 cut(s)	917, 1023
Hpy8I	GTNNAC	2 cut(s)	230, 782
HpyAV	CCTTC	8 cut(s)	39, 168, 215, 443, 623, 700, 783, 1085
HpyCH4III	ACNGT	2 cut(s)	947, 1071
HpyCH4V	TGCA	8 cut(s)	372, 386, 443, 623, 942, 989, 996, 1107
HpyF10VI	GCNNNNNNNGC	4 cut(s)	548, 608, 741, 1006
HpyF3I	CTNAG	7 cut(s)	413, 531, 615, 765, 802, 915, 1005
Hsp92II	CATG	4 cut(s)	55, 94, 739, 894
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	25, 274, 759
LmnI	GCTCC	3 cut(s)	207, 741, 919
Lsp1109I	GCAGC	1 cut(s)	620
LweI	GCATC	1 cut(s)	929
MaeI	CTAG	2 cut(s)	146, 152
MaeIII	GTNAC	2 cut(s)	331, 1071
MalI	GATC	3 cut(s)	27, 276, 761
MboI	GATC	3 cut(s)	25, 274, 759
MboII	GAAGA	9 cut(s)	47, 70, 203, 311, 849, 870, 873, 879, 946
MhlI	GDGCHC	1 cut(s)	98
MluCI	AATT	2 cut(s)	952, 972
MlyI	GAGTC	2 cut(s)	383, 602
MmeI	TCCRAC	1 cut(s)	365
MseI	TTAA	1 cut(s)	17
MslI	CAYNNNNRTG	2 cut(s)	50, 889
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	1 cut(s)	418
MspR9I	CCNGG	1 cut(s)	419
Mva1269I	GAATGC	2 cut(s)	625, 817
MvnI	CGCG	1 cut(s)	226
MwoI	GCNNNNNNNGC	4 cut(s)	548, 608, 741, 1006
NciI	CCSGG	1 cut(s)	419
NdeII	GATC	3 cut(s)	25, 274, 759
NlaIII	CATG	4 cut(s)	55, 94, 739, 894
NlaIV	GGNNCC	2 cut(s)	921, 982
NmuCI	GTSAC	2 cut(s)	331, 1071
PaqCI	CACCTGC	1 cut(s)	391
PctI	GAATGC	2 cut(s)	625, 817
PfeI	GAWTC	2 cut(s)	365, 700
PkrI	GCNGC	2 cut(s)	610, 816
PleI	GAGTC	2 cut(s)	383, 601
PpsI	GAGTC	2 cut(s)	383, 601
PshAI	GACNNNNGTC	1 cut(s)	393
Psp124BI	GAGCTC	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	921, 982
PspPI	GGNCC	3 cut(s)	495, 981, 1094
PstI	CTGCAG	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	2 cut(s)	355, 665
RsaNI	GTAC	2 cut(s)	354, 664
RseI	CAYNNNNRTG	2 cut(s)	50, 889
SacI	GAGCTC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	2 cut(s)	609, 815
Sau3AI	GATC	3 cut(s)	25, 274, 759
Sau96I	GGNCC	3 cut(s)	495, 981, 1094
SchI	GAGTC	2 cut(s)	383, 602
ScrFI	CCNGG	1 cut(s)	419
SduI	GDGCHC	1 cut(s)	98
SfaNI	GCATC	1 cut(s)	929
SfcI	CTRYAG	3 cut(s)	307, 384, 603
SinI	GGWCC	1 cut(s)	495
SmiMI	CAYNNNNRTG	2 cut(s)	50, 889
SmlI	CTYRAG	2 cut(s)	557, 655
SmoI	CTYRAG	2 cut(s)	557, 655
Sse9I	AATT	2 cut(s)	952, 972
SsiI	CCGC	3 cut(s)	72, 224, 814
SspMI	CTAG	2 cut(s)	146, 152
SstI	GAGCTC	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	417
TaaI	ACNGT	2 cut(s)	947, 1071
TaqI	TCGA	3 cut(s)	240, 435, 1022
TasI	AATT	2 cut(s)	952, 972
TauI	GCSGC	1 cut(s)	817
TfiI	GAWTC	2 cut(s)	365, 700
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	5 cut(s)	331, 604, 769, 952, 1074
TseFI	GTSAC	2 cut(s)	331, 1071
TseI	GCWGC	1 cut(s)	608
Tsp45I	GTSAC	2 cut(s)	331, 1071
TspDTI	ATGAA	6 cut(s)	54, 489, 642, 656, 873, 879
TspRI	CASTG	5 cut(s)	331, 604, 769, 952, 1074
VpaK11BI	GGWCC	1 cut(s)	495
XapI	RAATTY	1 cut(s)	952
XmiI	GTMKAC	1 cut(s)	781
XspI	CTAG	2 cut(s)	146, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.