Rh1BG290400

membrane-associated kinase regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0007268
Physical Location & Seq
Forward (+)
42610206 .. 42612712
2507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG290400.1

Sequence Viewer

Length: 936 bp
ATGGCTGTTGACCACTTATCCTATGATCCTTCAGAAGATGACTACATAGACATGGAAGTCGGTTCATACTCCGCCTTCTTCTCCCATTCTATGAGCTCTCCTCCACACCCCAGAGAGTTTGAGTTTCAAATGTCATCAAGCTCACTAGAAATAGAGCCCTCAACTACTTCACCAGCTGATGAGCTTTTCTACAAAGGAAAGCTCCTTCCTCTTCACCTCCCACCGCGTTTACAAATGGTCGAAAAACTACTCCAAAACTCCACTTCATGCTTTGACCATAACCCAAAAGATAGATTTGAAGAGTTCTATAGCACCCCATTAGCCACTACTGCCACAACTCCAACAACAATGAGTACCCCATTTGAGTCCTGCAACATCTCACCTTCGGAGTCTTGTCAAGTTAGCAGAGAGCTGAACCGGGATGAGTATATTTTCGAGTATGCAACTGATGGGAGTGGATTTGGATACGTCAATGAAAACTTGAAAAAATCTTGGACCAAAAAGTTGAAGCAGTACTCCTCACTTGGGTCTAAGCTCAAGGCTTCAAGGGCTTATCTCAAGTCCTTGTTTAGCAAAACTGGTTGCTCCAATGAGTCCAGTGCTCTAGCAGCTGCTAAGAATGCGGATGAAGGAATGGTTATGAAATCCGAGGACTTGAATCCACCACATTGCTCACCGGAAGCTCATTCTGGGCCTTCCTGGCCCGGGTCCGGCCCAACGAACAGGAGACCTCCGCCTGAGCCAATGCGAAGGTCAATTCGCCCTTCAGCCCTGGTCGTTCACCGGCGGGAAGCTCTACATGCAGAACGACCTCGACATGTCCGCCGCGTCCCTCACCAACCAACTCCGCGACCTCGACCTGCTACTCAGATCTGGCGTGCTCCACCAGTCAAACGCCACATCCGCCGTCTCGCCCCTCGCCGCCGCAAACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

311

Amino Acids

35.23

Weight (kDa)

9.31

Isoelectric Point (pI)

73.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 56
Acc36I ACCTGC 1 cut(s) 868
AccII CGCG 3 cut(s) 226, 828, 850
AclWI GGATC 1 cut(s) 20
AcuI CTGAAG 2 cut(s) 15, 750
AfaI GTAC 2 cut(s) 355, 515
AfiI CCNNNNNNNGG 3 cut(s) 525, 705, 710
AflIII ACRYGT 1 cut(s) 817
AgsI TTSAA 6 cut(s) 128, 299, 484, 508, 546, 658
AjnI CCWGG 2 cut(s) 698, 771
Alw21I GWGCWC 3 cut(s) 98, 604, 883
Alw26I GTCTC 2 cut(s) 721, 914
AlwI GGATC 1 cut(s) 20
Ama87I CYCGRG 1 cut(s) 704
AoxI GGCC 3 cut(s) 692, 701, 712
ApeKI GCWGC 2 cut(s) 608, 611
AspS9I GGNCC 5 cut(s) 495, 692, 702, 708, 713
AsuC2I CCSGG 3 cut(s) 419, 705, 706
AsuHPI GGTGA 6 cut(s) 162, 206, 372, 666, 773, 827
AvaI CYCGRG 1 cut(s) 704
AvaII GGWCC 2 cut(s) 495, 708
BanII GRGCYC 2 cut(s) 98, 159
Bbv12I GWGCWC 3 cut(s) 98, 604, 883
BbvI GCAGC 2 cut(s) 598, 620
BccI CCATC 1 cut(s) 443
BceAI ACGGC 1 cut(s) 891
BciT130I CCWGG 2 cut(s) 700, 773
BciVI GTATCC 1 cut(s) 458
BcnI CCSGG 3 cut(s) 419, 705, 706
BcoDI GTCTC 2 cut(s) 721, 914
BfaI CTAG 2 cut(s) 146, 605
BfmI CTRYAG 1 cut(s) 307
BfuAI ACCTGC 1 cut(s) 868
BfuI GTATCC 1 cut(s) 458
BglI GCCNNNNNGGC 1 cut(s) 700
BglII AGATCT 1 cut(s) 870
BisI GCNGC 5 cut(s) 609, 612, 826, 922, 925
BlsI GCNGC 5 cut(s) 610, 613, 827, 923, 926
BmcAI AGTACT 1 cut(s) 515
Bme1390I CCNGG 5 cut(s) 419, 700, 705, 706, 773
Bme18I GGWCC 2 cut(s) 495, 708
BmeT110I CYCGRG 1 cut(s) 704
BmgT120I GGNCC 5 cut(s) 495, 692, 702, 708, 713
BmiI GGNNCC 1 cut(s) 709
BmrFI CCNGG 5 cut(s) 419, 700, 705, 706, 773
BplI GAGNNNNNCTC 2 cut(s) 85, 117
Bpu10I CCTNAGC 1 cut(s) 738
BpuEI CTTGAG 2 cut(s) 521, 542
BpuMI CCSGG 3 cut(s) 419, 705, 706
BsaI GGTCTC 1 cut(s) 721
BsaJI CCNNGG 3 cut(s) 648, 704, 771
BsaWI WCCGGW 1 cut(s) 676
Bsc4I CCNNNNNNNGG 3 cut(s) 525, 705, 710
Bse118I RCCGGY 1 cut(s) 783
Bse1I ACTGG 3 cut(s) 583, 597, 887
Bse3DI GCAATG 1 cut(s) 667
BseBI CCWGG 2 cut(s) 700, 773
BseDI CCNNGG 3 cut(s) 648, 704, 771
BseGI GGATG 3 cut(s) 427, 631, 900
BseLI CCNNNNNNNGG 3 cut(s) 525, 705, 710
BseMI GCAATG 1 cut(s) 667
BseMII CTCAG 2 cut(s) 729, 881
BseNI ACTGG 3 cut(s) 583, 597, 887
BseRI GAGGAG 2 cut(s) 90, 508
BseXI GCAGC 2 cut(s) 598, 620
Bsh1236I CGCG 3 cut(s) 226, 828, 850
BshFI GGCC 3 cut(s) 694, 703, 714
BsiHKAI GWGCWC 3 cut(s) 98, 604, 883
BsiHKCI CYCGRG 1 cut(s) 704
BsiSI CCGG 5 cut(s) 418, 677, 705, 711, 784
BslFI GGGAC 1 cut(s) 815
BslI CCNNNNNNNGG 3 cut(s) 525, 705, 710
BsmAI GTCTC 2 cut(s) 721, 914
BsmBI CGTCTC 1 cut(s) 914
BsmFI GGGAC 1 cut(s) 815
BsmI GAATGC 1 cut(s) 625
BsnI GGCC 3 cut(s) 694, 703, 714
Bso31I GGTCTC 1 cut(s) 721
BsoBI CYCGRG 1 cut(s) 704
Bsp1286I GDGCHC 4 cut(s) 98, 159, 604, 883
Bsp143I GATC 2 cut(s) 25, 870
BspANI GGCC 3 cut(s) 694, 703, 714
BspCNI CTCAG 2 cut(s) 730, 880
BspFNI CGCG 3 cut(s) 226, 828, 850
BspLI GGNNCC 1 cut(s) 709
BspMI ACCTGC 1 cut(s) 868
BspPI GGATC 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 721
BsrDI GCAATG 1 cut(s) 667
BsrFI RCCGGY 1 cut(s) 783
BsrI ACTGG 3 cut(s) 583, 597, 887
BssAI RCCGGY 1 cut(s) 783
BssECI CCNNGG 3 cut(s) 648, 704, 771
BssMI GATC 2 cut(s) 25, 870
Bst2UI CCWGG 2 cut(s) 700, 773
Bst4CI ACNGT 1 cut(s) 933
Bst6I CTCTTC 2 cut(s) 216, 294
BstC8I GCNNGC 1 cut(s) 879
BstDEI CTNAG 4 cut(s) 531, 615, 738, 867
BstF5I GGATG 3 cut(s) 427, 631, 900
BstFNI CGCG 3 cut(s) 226, 828, 850
BstKTI GATC 2 cut(s) 28, 873
BstMAI GTCTC 2 cut(s) 721, 914
BstMBI GATC 2 cut(s) 25, 870
BstMWI GCNNNNNNNGC 7 cut(s) 329, 548, 608, 620, 700, 800, 903
BstNI CCWGG 2 cut(s) 700, 773
BstNSI RCATGY 2 cut(s) 803, 821
BstSCI CCNGG 5 cut(s) 417, 698, 703, 704, 771
BstSFI CTRYAG 1 cut(s) 307
BstUI CGCG 3 cut(s) 226, 828, 850
BstV1I GCAGC 2 cut(s) 598, 620
BstX2I RGATCY 1 cut(s) 870
BstYI RGATCY 1 cut(s) 870
BsuI GTATCC 1 cut(s) 458
BsuRI GGCC 3 cut(s) 694, 703, 714
BtsCI GGATG 3 cut(s) 427, 631, 900
BtsIMutI CAGTG 1 cut(s) 604
BveI ACCTGC 1 cut(s) 868
Cac8I GCNNGC 1 cut(s) 879
Cfr10I RCCGGY 1 cut(s) 783
Cfr13I GGNCC 5 cut(s) 495, 692, 702, 708, 713
Cfr9I CCCGGG 1 cut(s) 704
CseI GACGC 1 cut(s) 817
Csp6I GTAC 2 cut(s) 354, 514
CviAII CATG 4 cut(s) 52, 267, 800, 818
CviQI GTAC 2 cut(s) 354, 514
DdeI CTNAG 4 cut(s) 531, 615, 738, 867
DpnI GATC 2 cut(s) 27, 872
DpnII GATC 2 cut(s) 25, 870
DrdI GACNNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 56
Eam1104I CTCTTC 2 cut(s) 216, 294
EarI CTCTTC 2 cut(s) 216, 294
EciI GGCGGA 4 cut(s) 61, 723, 812, 893
Ecl136II GAGCTC 1 cut(s) 96
Eco24I GRGCYC 2 cut(s) 98, 159
Eco31I GGTCTC 1 cut(s) 721
Eco47I GGWCC 2 cut(s) 495, 708
Eco53kI GAGCTC 1 cut(s) 96
Eco57I CTGAAG 2 cut(s) 15, 750
Eco88I CYCGRG 1 cut(s) 704
EcoICRI GAGCTC 1 cut(s) 96
EcoRII CCWGG 2 cut(s) 698, 771
EcoT38I GRGCYC 2 cut(s) 98, 159
Esp3I CGTCTC 1 cut(s) 914
FaeI CATG 4 cut(s) 55, 270, 803, 821
FaqI GGGAC 1 cut(s) 815
FatI CATG 4 cut(s) 51, 266, 799, 817
FauI CCCGC 1 cut(s) 780
Fnu4HI GCNGC 5 cut(s) 609, 612, 826, 922, 925
FokI GGATG 3 cut(s) 434, 638, 887
FriOI GRGCYC 2 cut(s) 98, 159
Fsp4HI GCNGC 5 cut(s) 609, 612, 826, 922, 925
FspBI CTAG 2 cut(s) 146, 605
GluI GCNGC 5 cut(s) 609, 612, 826, 922, 925
HaeIII GGCC 3 cut(s) 694, 703, 714
HapII CCGG 5 cut(s) 418, 677, 705, 711, 784
HgaI GACGC 1 cut(s) 817
Hin1II CATG 4 cut(s) 55, 270, 803, 821
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HinfI GANTC 4 cut(s) 365, 389, 593, 658
HpaII CCGG 5 cut(s) 418, 677, 705, 711, 784
HphI GGTGA 6 cut(s) 162, 206, 372, 666, 773, 827
Hpy166II GTNNAC 3 cut(s) 10, 230, 781
Hpy188I TCNGA 4 cut(s) 34, 388, 649, 870
Hpy8I GTNNAC 3 cut(s) 10, 230, 781
HpyAV CCTTC 8 cut(s) 39, 85, 215, 393, 623, 705, 744, 774
HpyCH4III ACNGT 1 cut(s) 933
HpyCH4IV ACGT 1 cut(s) 468
HpyCH4V TGCA 3 cut(s) 372, 443, 803
HpyF10VI GCNNNNNNNGC 7 cut(s) 329, 548, 608, 620, 700, 800, 903
HpyF3I CTNAG 4 cut(s) 531, 615, 738, 867
HpySE526I ACGT 1 cut(s) 468
Hsp92II CATG 4 cut(s) 55, 270, 803, 821
Kzo9I GATC 2 cut(s) 25, 870
LmnI GCTCC 3 cut(s) 207, 590, 886
Lsp1109I GCAGC 2 cut(s) 598, 620
MaeI CTAG 2 cut(s) 146, 605
MaeII ACGT 1 cut(s) 468
MalI GATC 2 cut(s) 27, 872
MboI GATC 2 cut(s) 25, 870
MboII GAAGA 4 cut(s) 47, 70, 203, 311
MflI RGATCY 1 cut(s) 870
MhlI GDGCHC 4 cut(s) 98, 159, 604, 883
MluCI AATT 1 cut(s) 756
MlyI GAGTC 3 cut(s) 374, 398, 602
MmeI TCCRAC 1 cut(s) 365
MslI CAYNNNNRTG 1 cut(s) 50
MspA1I CMGCKG 2 cut(s) 176, 611
MspI CCGG 5 cut(s) 418, 677, 705, 711, 784
MspR9I CCNGG 5 cut(s) 419, 700, 705, 706, 773
Mva1269I GAATGC 1 cut(s) 625
MvaI CCWGG 2 cut(s) 700, 773
MvnI CGCG 3 cut(s) 226, 828, 850
MwoI GCNNNNNNNGC 7 cut(s) 329, 548, 608, 620, 700, 800, 903
NciI CCSGG 3 cut(s) 419, 705, 706
NdeII GATC 2 cut(s) 25, 870
NlaIII CATG 4 cut(s) 55, 270, 803, 821
NlaIV GGNNCC 1 cut(s) 709
NspI RCATGY 2 cut(s) 803, 821
PciI ACATGT 1 cut(s) 817
PctI GAATGC 1 cut(s) 625
PfeI GAWTC 1 cut(s) 658
PkrI GCNGC 5 cut(s) 610, 613, 827, 923, 926
PleI GAGTC 3 cut(s) 373, 397, 601
PpsI GAGTC 3 cut(s) 373, 397, 601
PscI ACATGT 1 cut(s) 817
Psp124BI GAGCTC 1 cut(s) 98
Psp6I CCWGG 2 cut(s) 698, 771
PspGI CCWGG 2 cut(s) 698, 771
PspN4I GGNNCC 1 cut(s) 709
PspPI GGNCC 5 cut(s) 495, 692, 702, 708, 713
PsuI RGATCY 1 cut(s) 870
PvuII CAGCTG 2 cut(s) 176, 611
RsaI GTAC 2 cut(s) 355, 515
RsaNI GTAC 2 cut(s) 354, 514
RseI CAYNNNNRTG 1 cut(s) 50
SacI GAGCTC 1 cut(s) 98
SatI GCNGC 5 cut(s) 609, 612, 826, 922, 925
Sau3AI GATC 2 cut(s) 25, 870
Sau96I GGNCC 5 cut(s) 495, 692, 702, 708, 713
ScaI AGTACT 1 cut(s) 515
SchI GAGTC 3 cut(s) 374, 398, 602
ScrFI CCNGG 5 cut(s) 419, 700, 705, 706, 773
SduI GDGCHC 4 cut(s) 98, 159, 604, 883
SfcI CTRYAG 1 cut(s) 307
SfiI GGCCNNNNNGGCC 1 cut(s) 700
SgrAI CRCCGGYG 1 cut(s) 783
SinI GGWCC 2 cut(s) 495, 708
SmaI CCCGGG 1 cut(s) 706
SmiMI CAYNNNNRTG 1 cut(s) 50
SmlI CTYRAG 2 cut(s) 536, 557
SmoI CTYRAG 2 cut(s) 536, 557
Sse9I AATT 1 cut(s) 756
SspMI CTAG 2 cut(s) 146, 605
SstI GAGCTC 1 cut(s) 98
StyD4I CCNGG 5 cut(s) 417, 698, 703, 704, 771
TaaI ACNGT 1 cut(s) 933
TaiI ACGT 1 cut(s) 471
TaqI TCGA 4 cut(s) 240, 435, 814, 856
TasI AATT 1 cut(s) 756
TatI WGTACW 1 cut(s) 513
TauI GCSGC 3 cut(s) 828, 924, 927
TfiI GAWTC 1 cut(s) 658
TscAI CASTG 1 cut(s) 604
TseI GCWGC 2 cut(s) 608, 611
TspDTI ATGAA 5 cut(s) 54, 255, 489, 642, 656
TspMI CCCGGG 1 cut(s) 704
TspRI CASTG 1 cut(s) 604
VpaK11BI GGWCC 2 cut(s) 495, 708
XceI RCATGY 2 cut(s) 803, 821
XmaI CCCGGG 1 cut(s) 704
XspI CTAG 2 cut(s) 146, 605
ZrmI AGTACT 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.