Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007268

Physical Location & Seq

Genomic Coordinates Reverse (-)

11849613 .. 11850980

Gene Structure 1368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00291400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCTGTTGACCACTTATCTTATGATCCTTCAGAAGATGACTACATAGACATGGAAGTCGGTTCGTACTCCGCCTTCTTCTCCCACTCTATGAGCTCTCCTCCACGTCCCAGAGAATTTGAGTTTCAAATGTCATCAAGCTCACTAGAAATAGAGCCTTCAACTACTTCACCAGCTGATGAGCTTTTCTACAAAGGAAAGCTCCTTCCTCTTCACCTCCCACCACGTTTACAAATGGTCGAAAAACTACTCCAAAACTCCACTTCATGCTTTGATCATAACCCAAAAGATAGATTTGAAGAGTTCTATAGCAGCCCATTAGCCACTACAGCCACAACTCCAACAACAATGAGTACCCCATTTGAGTCCTGCAACATTTCACCTTCGGAGTCTTGTCAAGTTAGCAGAGAGCTGAACCGGGATGAGTATATTTTCGAGTATGCAACTGAAGGGAGTGGATTTGGATACGTCACTGAAAACTCAAAAAAATCTTGGACCAAAAAGTTGAAGCAGTACTCCTCATTTGGGTCTAAGCTCAAGGCTTCAAGGGCTTATCTCAAGTCCTTGTTTGGCAAAACTGGTTGCTCCAATGAGTCCAGTGCTCTAGCAGCTGCTAAGAATGCAGATGAAGGAATGGTTATAAAATCCGAGGACTTGAGCAAGTACACGAAGGTGGGGAAGAAAAACCCCTTTGGACAAATTCAGAAGGATAAATATAGAATGTCTGCTTCTGGCATGAGGAGCTTCAACAAAGACAAGATCACTGAGAATGGTGCTGGTCTTCACAGAAGGTCATTTTCATTAGCTATCAAGCGGCATTCTACAAAGGACTCTACTTCACCATCCTCCTCCTCCTCATCATTATCAGCTTCTTCTTCTTCTTCATCTTCATGTTCAAACCTTTCAAATGGGACTCAGGAGCCGAAGTTTCTGAAGAGATGCAACAGTGCAAATTCAGAAATGGAGAGTTCAATTCAGGGGGCCATTGCGCATTGCAAGCAATCTCAGCAAACACTTCGTTCAAGAAAGACTGCGAGTGAAGTTGGGTTTTACTCATTGTCAACATCACTGTCAGCTTGTGAGGACAAAGATGGGCCAGACCTTTGCAGGGGGATGAGAAAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

375

Amino Acids

41.41

Weight (kDa)

8.69

Isoelectric Point (pI)

63.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39370
fragaria_vesca	FvH4_7g20880
malus_domestica	MD07G1186600.v1.1
prunus_persica	Prupe.2G225400_v2.0.a1
pyrus_communis	pycom07g17790
rosa_chinensis	RchiOBHm_Chr1g0365131 RchiOBHm_Chr7g0221341
rosa_laevigata	RLG00000002159 RLG00000027439
rosa_multiflora	Rmu_sc0000324.1_g000026 Rmu_sc0001688.1_g000007
rosa_roxburghii	Rroxscaffold_2G00105470 Rroxscaffold_3G00238390 Rroxscaffold_4G00291400
rosa_rugosa	Rorug01G0320200
rosa_samantha	Rh1AG328800 Rh1BG290400 Rh1CG307100 Rh1DG322000 Rh2DG256000 Rh7AG341500 Rh7CG359400 Rh7DG340000
rosa_wichuraiana	Rw1G029180 Rw7G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	641
AasI	GACNNNNNNGTC	1 cut(s)	56
Acc16I	TGCGCA	1 cut(s)	990
AciI	CCGC	2 cut(s)	72, 814
AclWI	GGATC	1 cut(s)	20
AcsI	RAATTY	3 cut(s)	116, 699, 952
AcuI	CTGAAG	3 cut(s)	15, 468, 953
AfaI	GTAC	4 cut(s)	68, 355, 515, 665
AfiI	CCNNNNNNNGG	2 cut(s)	525, 1108
AjiI	CACGTC	1 cut(s)	107
AleI	CACNNNNGTG	1 cut(s)	671
Alw21I	GWGCWC	2 cut(s)	98, 604
AlwI	GGATC	1 cut(s)	20
AoxI	GGCC	2 cut(s)	981, 1094
ApeKI	GCWGC	3 cut(s)	312, 608, 611
ApoI	RAATTY	3 cut(s)	116, 699, 952
AspLEI	GCGC	1 cut(s)	991
AspS9I	GGNCC	3 cut(s)	495, 981, 1094
AsuC2I	CCSGG	1 cut(s)	419
AsuHPI	GGTGA	4 cut(s)	162, 206, 372, 831
AvaII	GGWCC	1 cut(s)	495
BanII	GRGCYC	1 cut(s)	98
BarI	GAAGNNNNNNTAC	2 cut(s)	59, 91
BbsI	GAAGAC	1 cut(s)	773
Bbv12I	GWGCWC	2 cut(s)	98, 604
BbvI	GCAGC	3 cut(s)	324, 598, 620
BccI	CCATC	2 cut(s)	850, 1085
BcgI	CGANNNNNNTGC	2 cut(s)	998, 1032
BciVI	GTATCC	1 cut(s)	458
BclI	TGATCA	1 cut(s)	274
BcnI	CCSGG	1 cut(s)	419
BfaI	CTAG	2 cut(s)	146, 605
BfmI	CTRYAG	2 cut(s)	307, 327
BfuI	GTATCC	1 cut(s)	458
BisI	GCNGC	4 cut(s)	313, 609, 612, 815
BlsI	GCNGC	4 cut(s)	314, 610, 613, 816
BmcAI	AGTACT	1 cut(s)	515
Bme1390I	CCNGG	1 cut(s)	419
Bme18I	GGWCC	1 cut(s)	495
BmgBI	CACGTC	1 cut(s)	107
BmgT120I	GGNCC	3 cut(s)	495, 981, 1094
BmiI	GGNNCC	2 cut(s)	921, 982
BmrFI	CCNGG	1 cut(s)	419
BmsI	GCATC	1 cut(s)	929
BpiI	GAAGAC	1 cut(s)	773
BplI	GAGNNNNNCTC	2 cut(s)	85, 117
BpuEI	CTTGAG	3 cut(s)	521, 542, 676
BpuMI	CCSGG	1 cut(s)	419
BsaJI	CCNNGG	1 cut(s)	648
BsaXI	ACNNNNNCTCC	2 cut(s)	911, 941
Bsc4I	CCNNNNNNNGG	2 cut(s)	525, 1108
Bse1I	ACTGG	2 cut(s)	583, 597
Bse3DI	GCAATG	2 cut(s)	984, 991
BseDI	CCNNGG	1 cut(s)	648
BseGI	GGATG	3 cut(s)	427, 842, 1119
BseLI	CCNNNNNNNGG	2 cut(s)	525, 1108
BseMI	GCAATG	2 cut(s)	984, 991
BseMII	CTCAG	3 cut(s)	756, 929, 1019
BseNI	ACTGG	2 cut(s)	583, 597
BseRI	GAGGAG	6 cut(s)	90, 508, 754, 838, 841, 844
BseXI	GCAGC	3 cut(s)	324, 598, 620
BshFI	GGCC	2 cut(s)	983, 1096
BsiHKAI	GWGCWC	2 cut(s)	98, 604
BsiSI	CCGG	1 cut(s)	418
BslFI	GGGAC	2 cut(s)	93, 925
BslI	CCNNNNNNNGG	2 cut(s)	525, 1108
BsmFI	GGGAC	2 cut(s)	93, 925
BsmI	GAATGC	2 cut(s)	625, 817
BsnI	GGCC	2 cut(s)	983, 1096
Bsp1286I	GDGCHC	2 cut(s)	98, 604
Bsp143I	GATC	3 cut(s)	25, 274, 759
BspACI	CCGC	2 cut(s)	72, 814
BspANI	GGCC	2 cut(s)	983, 1096
BspCNI	CTCAG	3 cut(s)	757, 928, 1018
BspLI	GGNNCC	2 cut(s)	921, 982
BspPI	GGATC	1 cut(s)	20
BsrDI	GCAATG	2 cut(s)	984, 991
BsrI	ACTGG	2 cut(s)	583, 597
BssECI	CCNNGG	1 cut(s)	648
BssMI	GATC	3 cut(s)	25, 274, 759
Bst4CI	ACNGT	2 cut(s)	947, 1071
Bst6I	CTCTTC	3 cut(s)	216, 294, 929
BstC8I	GCNNGC	1 cut(s)	998
BstDEI	CTNAG	5 cut(s)	531, 615, 765, 915, 1005
BstF5I	GGATG	3 cut(s)	427, 842, 1119
BstHHI	GCGC	1 cut(s)	991
BstKTI	GATC	3 cut(s)	28, 277, 762
BstMBI	GATC	3 cut(s)	25, 274, 759
BstMWI	GCNNNNNNNGC	7 cut(s)	329, 548, 608, 620, 741, 997, 1006
BstSCI	CCNGG	1 cut(s)	417
BstSFI	CTRYAG	2 cut(s)	307, 327
BstV1I	GCAGC	3 cut(s)	324, 598, 620
BstV2I	GAAGAC	1 cut(s)	773
BsuI	GTATCC	1 cut(s)	458
BsuRI	GGCC	2 cut(s)	983, 1096
BtrI	CACGTC	1 cut(s)	107
BtsCI	GGATG	3 cut(s)	427, 842, 1119
BtsIMutI	CAGTG	5 cut(s)	471, 604, 762, 952, 1067
Cac8I	GCNNGC	1 cut(s)	998
CfoI	GCGC	1 cut(s)	991
Cfr13I	GGNCC	3 cut(s)	495, 981, 1094
Csp6I	GTAC	4 cut(s)	67, 354, 514, 664
CviAII	CATG	4 cut(s)	52, 267, 736, 891
CviQI	GTAC	4 cut(s)	67, 354, 514, 664
DdeI	CTNAG	5 cut(s)	531, 615, 765, 915, 1005
DpnI	GATC	3 cut(s)	27, 276, 761
DpnII	GATC	3 cut(s)	25, 274, 759
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eam1104I	CTCTTC	3 cut(s)	216, 294, 929
EarI	CTCTTC	3 cut(s)	216, 294, 929
EciI	GGCGGA	1 cut(s)	61
Ecl136II	GAGCTC	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	495
Eco53kI	GAGCTC	1 cut(s)	96
Eco57I	CTGAAG	3 cut(s)	15, 468, 953
EcoICRI	GAGCTC	1 cut(s)	96
EcoT38I	GRGCYC	1 cut(s)	98
FaeI	CATG	4 cut(s)	55, 270, 739, 894
FaqI	GGGAC	2 cut(s)	93, 925
FatI	CATG	4 cut(s)	51, 266, 735, 890
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	4 cut(s)	313, 609, 612, 815
FokI	GGATG	2 cut(s)	434, 829
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	4 cut(s)	313, 609, 612, 815
FspBI	CTAG	2 cut(s)	146, 605
FspI	TGCGCA	1 cut(s)	990
GlaI	GCGC	1 cut(s)	990
GluI	GCNGC	4 cut(s)	313, 609, 612, 815
HaeIII	GGCC	2 cut(s)	983, 1096
HapII	CCGG	1 cut(s)	418
HhaI	GCGC	1 cut(s)	991
Hin1II	CATG	4 cut(s)	55, 270, 739, 894
Hin6I	GCGC	1 cut(s)	989
HinP1I	GCGC	1 cut(s)	989
HincII	GTYRAC	2 cut(s)	10, 1062
HindII	GTYRAC	2 cut(s)	10, 1062
HinfI	GANTC	5 cut(s)	365, 389, 593, 830, 913
HpaII	CCGG	1 cut(s)	418
HphI	GGTGA	4 cut(s)	162, 206, 372, 831
Hpy166II	GTNNAC	4 cut(s)	10, 230, 666, 1062
Hpy188I	TCNGA	6 cut(s)	34, 388, 649, 705, 933, 958
Hpy188III	TCNNGA	2 cut(s)	917, 1023
Hpy8I	GTNNAC	4 cut(s)	10, 230, 666, 1062
HpyCH4III	ACNGT	2 cut(s)	947, 1071
HpyCH4IV	ACGT	3 cut(s)	106, 226, 468
HpyCH4V	TGCA	7 cut(s)	372, 443, 623, 942, 950, 996, 1107
HpyF10VI	GCNNNNNNNGC	7 cut(s)	329, 548, 608, 620, 741, 997, 1006
HpyF3I	CTNAG	5 cut(s)	531, 615, 765, 915, 1005
HpySE526I	ACGT	3 cut(s)	106, 226, 468
Hsp92II	CATG	4 cut(s)	55, 270, 739, 894
HspAI	GCGC	1 cut(s)	989
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	25, 274, 759
LmnI	GCTCC	4 cut(s)	207, 590, 741, 919
Lsp1109I	GCAGC	3 cut(s)	324, 598, 620
LweI	GCATC	1 cut(s)	929
MaeI	CTAG	2 cut(s)	146, 605
MaeII	ACGT	3 cut(s)	106, 226, 468
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	3 cut(s)	27, 276, 761
MboI	GATC	3 cut(s)	25, 274, 759
MhlI	GDGCHC	2 cut(s)	98, 604
MluCI	AATT	4 cut(s)	116, 699, 952, 972
MlyI	GAGTC	5 cut(s)	374, 398, 602, 824, 907
MmeI	TCCRAC	1 cut(s)	365
MslI	CAYNNNNRTG	3 cut(s)	50, 671, 889
MspA1I	CMGCKG	2 cut(s)	176, 611
MspI	CCGG	1 cut(s)	418
MspR9I	CCNGG	1 cut(s)	419
Mva1269I	GAATGC	2 cut(s)	625, 817
MwoI	GCNNNNNNNGC	7 cut(s)	329, 548, 608, 620, 741, 997, 1006
NciI	CCSGG	1 cut(s)	419
NdeII	GATC	3 cut(s)	25, 274, 759
NlaIII	CATG	4 cut(s)	55, 270, 739, 894
NlaIV	GGNNCC	2 cut(s)	921, 982
NmuCI	GTSAC	1 cut(s)	469
NsbI	TGCGCA	1 cut(s)	990
OliI	CACNNNNGTG	1 cut(s)	671
PctI	GAATGC	2 cut(s)	625, 817
PkrI	GCNGC	4 cut(s)	314, 610, 613, 816
PleI	GAGTC	5 cut(s)	373, 397, 601, 824, 907
PpsI	GAGTC	5 cut(s)	373, 397, 601, 824, 907
PsiI	TTATAA	1 cut(s)	641
Psp124BI	GAGCTC	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	921, 982
PspPI	GGNCC	3 cut(s)	495, 981, 1094
PvuII	CAGCTG	2 cut(s)	176, 611
RsaI	GTAC	4 cut(s)	68, 355, 515, 665
RsaNI	GTAC	4 cut(s)	67, 354, 514, 664
RseI	CAYNNNNRTG	3 cut(s)	50, 671, 889
SacI	GAGCTC	1 cut(s)	98
SatI	GCNGC	4 cut(s)	313, 609, 612, 815
Sau3AI	GATC	3 cut(s)	25, 274, 759
Sau96I	GGNCC	3 cut(s)	495, 981, 1094
ScaI	AGTACT	1 cut(s)	515
SchI	GAGTC	5 cut(s)	374, 398, 602, 824, 907
ScrFI	CCNGG	1 cut(s)	419
SduI	GDGCHC	2 cut(s)	98, 604
SfaNI	GCATC	1 cut(s)	929
SfcI	CTRYAG	2 cut(s)	307, 327
SinI	GGWCC	1 cut(s)	495
SmiMI	CAYNNNNRTG	3 cut(s)	50, 671, 889
SmlI	CTYRAG	3 cut(s)	536, 557, 655
SmoI	CTYRAG	3 cut(s)	536, 557, 655
Sse9I	AATT	4 cut(s)	116, 699, 952, 972
SsiI	CCGC	2 cut(s)	72, 814
SspMI	CTAG	2 cut(s)	146, 605
SstI	GAGCTC	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	417
TaaI	ACNGT	2 cut(s)	947, 1071
TaiI	ACGT	3 cut(s)	109, 229, 471
TaqI	TCGA	2 cut(s)	240, 435
TasI	AATT	4 cut(s)	116, 699, 952, 972
TatI	WGTACW	2 cut(s)	513, 663
TauI	GCSGC	1 cut(s)	817
TscAI	CASTG	5 cut(s)	478, 604, 769, 952, 1074
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	3 cut(s)	312, 608, 611
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	5 cut(s)	255, 642, 789, 873, 879
TspRI	CASTG	5 cut(s)	478, 604, 769, 952, 1074
VpaK11BI	GGWCC	1 cut(s)	495
XapI	RAATTY	3 cut(s)	116, 699, 952
XspI	CTAG	2 cut(s)	146, 605
ZrmI	AGTACT	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.