AT2G39710

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
16561788 .. 16563441
1654 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39710.1

Sequence Viewer

Length: 1329 bp
ATGATGGATTCGTCATCATCATCATCATTATCTCTTTCAAAAAATTTTCTTCGAATCTCAGTTCTACTTCTTATTTTCCCTCTAACGTTCTGCAAAACATCTTCTACAAATCAAACACTACTCTTCTCTCTCAAAACACAGAAACTTCCTCAGTCTTCTTCAGACAAGCTTTCATTCAGACACAATGTTACTCTCACCGTCACTCTCGCCGTCGGCGATCCACCTCAAAATATCTCGATGGTTCTTGATACCGGAAGCGAGCTCTCATGGCTTCACTGCAAGAAATCTCCAAACTTAGGATCCGTTTTTAACCCGGTTTCATCCTCTACGTACTCCCCTGTGCCTTGCTCCTCACCAATTTGCAGGACCCGTACCCGGGATTTACCCATACCCGCTTCATGCGATCCGAAGACCCATCTCTGCCACGTGGCTATCTCCTACGCTGACGCTACATCAATCGAAGGCAACTTGGCTCATGAGACGTTCGTAATCGGGTCTGTGACCCGACCCGGTACTTTATTCGGGTGTATGGACTCAGGTTTAAGCTCCAATTCGGAGGAAGATGCTAAATCGACCGGTTTAATGGGAATGAACCGGGGATCTTTATCTTTTGTTAACCAGCTGGGTTTCTCAAAATTTTCGTATTGCATATCCGGTTCAGATTCCTCCGGTTTTTTGCTTCTCGGTGACGCGTCCTACTCCTGGCTCGGTCCAATCCAATATACGCCTCTGGTTCTACAATCGACGCCGTTACCTTATTTCGACCGGGTTGCTTACACGGTCCAATTAGAAGGAATCCGGGTCGGGTCAAAGATACTTTCTTTACCGAAATCTGTATTCGTACCGGATCATACCGGAGCAGGTCAGACGATGGTGGATTCAGGTACCCAATTTACGTTCCTAATGGGTCCGGTTTACACTGCCTTAAAAAACGAGTTTATTACGCAAACCAAATCGGTTCTCAGGCTTGTAGACGACCCGGATTTCGTGTTCCAAGGGACAATGGACCTTTGTTACAAGGTTGGGTCAACGACACGGCCCAATTTCTCGGGTTTACCCATGGTTAGTTTAATGTTCCGTGGCGCGGAGATGAGTGTGTCGGGTCAGAAACTGTTGTACCGGGTAAACGGAGCCGGGTCGGAAGGAAAAGAAGAAGTATATTGCTTCACGTTTGGGAACTCTGATCTTTTGGGGATAGAAGCATTTGTTATAGGTCACCATCATCAGCAAAACGTGTGGATGGAGTTTGATTTAGCTAAATCAAGGGTTGGTTTCGCTGGTAACGTCAGATGTGATTTAGCTAGTCAACGGCTCGGATTAAGAGATTGA

Protein Analysis

442

Amino Acids

48.0

Weight (kDa)

7.08

Isoelectric Point (pI)

35.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 66 - 230 5.8e-38 Xylanase inhibitor N-terminal
Asp PF00026 68 - 426 5.9e-16 Eukaryotic aspartyl protease
TAXi_C PF14541 258 - 426 1.7e-33 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39710
fragaria_vesca FvH4_7g22840
malus_domestica MD01G1136600.v1.1 MD07G1201600.v1.1
prunus_persica Prupe.2G238200_v2.0.a1
pyrus_communis pycom01g15730 pycom07g18860
rosa_chinensis RchiOBHm_Chr1g0368001
rosa_laevigata RLG00000027248
rosa_roxburghii Rroxscaffold_4G00288960
rosa_rugosa Rorug01G0338400
rosa_samantha Rh1AG345100 Rh1BG307400 Rh1CG323000 Rh1DG339500
rosa_wichuraiana Rw1G030710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 851
Acc65I GGTACC 1 cut(s) 884
AccB1I GGYRCC 1 cut(s) 884
AccI GTMKAC 1 cut(s) 972
AccII CGCG 2 cut(s) 692, 1085
AciI CCGC 2 cut(s) 393, 1085
AclI AACGTT 1 cut(s) 86
AclWI GGATC 6 cut(s) 212, 294, 307, 398, 607, 855
AcsI RAATTY 2 cut(s) 43, 635
AcuI CTGAAG 1 cut(s) 144
AcvI CACGTG 1 cut(s) 427
AcyI GRCGYC 1 cut(s) 746
AfaI GTAC 6 cut(s) 332, 373, 514, 843, 886, 1118
AfiI CCNNNNNNNGG 5 cut(s) 296, 375, 376, 702, 1084
AflIII ACRYGT 2 cut(s) 690, 1233
AgeI ACCGGT 1 cut(s) 575
AgsI TTSAA 1 cut(s) 39
AjnI CCWGG 1 cut(s) 701
AloI GAACNNNNNNTCC 2 cut(s) 974, 1006
AluBI AGCT 6 cut(s) 169, 262, 546, 622, 1256, 1301
AluI AGCT 6 cut(s) 169, 262, 546, 622, 1256, 1301
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 1 cut(s) 473
AlwI GGATC 6 cut(s) 212, 294, 307, 398, 607, 855
AlwNI CAGNNNCTG 1 cut(s) 1111
Ama87I CYCGRG 2 cut(s) 375, 1048
AoxI GGCC 1 cut(s) 1037
ApoI RAATTY 2 cut(s) 43, 635
ArsI GACNNNNNNTTYG 2 cut(s) 968, 1000
AsiGI ACCGGT 1 cut(s) 575
Asp718I GGTACC 1 cut(s) 884
AspLEI GCGC 1 cut(s) 1085
AspS9I GGNCC 6 cut(s) 366, 710, 781, 908, 1006, 1038
AsuHPI GGTGA 4 cut(s) 187, 345, 698, 1208
AsuII TTCGAA 1 cut(s) 52
AvaI CYCGRG 2 cut(s) 375, 1048
AvaII GGWCC 5 cut(s) 366, 710, 781, 908, 1006
BaeI ACNNNNGTAYC 2 cut(s) 1100, 1133
BamHI GGATCC 1 cut(s) 299
BanI GGYRCC 1 cut(s) 884
BanII GRGCYC 1 cut(s) 264
BbrPI CACGTG 1 cut(s) 427
BbsI GAAGAC 2 cut(s) 147, 416
Bbv12I GWGCWC 1 cut(s) 264
BccI CCATC 5 cut(s) 232, 423, 865, 1227, 1234
BceAI ACGGC 4 cut(s) 194, 733, 1052, 1325
BcgI CGANNNNNNTGC 2 cut(s) 752, 786
BciT130I CCWGG 1 cut(s) 703
BcoDI GTCTC 1 cut(s) 473
BfaI CTAG 1 cut(s) 1302
BfuAI ACCTGC 1 cut(s) 851
Bme18I GGWCC 5 cut(s) 366, 710, 781, 908, 1006
BmeT110I CYCGRG 2 cut(s) 375, 1048
BmgT120I GGNCC 6 cut(s) 366, 710, 781, 908, 1006, 1038
BmiI GGNNCC 5 cut(s) 301, 368, 886, 909, 1132
BmsI GCATC 1 cut(s) 553
BpiI GAAGAC 2 cut(s) 147, 416
Bpu14I TTCGAA 1 cut(s) 52
BsaAI YACGTR 2 cut(s) 330, 427
BsaBI GATNNNNATC 1 cut(s) 604
BsaHI GRCGYC 1 cut(s) 746
BsaJI CCNNGG 5 cut(s) 375, 595, 994, 1059, 1078
BsaWI WCCGGW 7 cut(s) 251, 575, 653, 668, 844, 854, 910
Bsc4I CCNNNNNNNGG 5 cut(s) 296, 375, 376, 702, 1084
Bse118I RCCGGY 1 cut(s) 575
Bse8I GATNNNNATC 1 cut(s) 604
BseBI CCWGG 1 cut(s) 703
BseDI CCNNGG 5 cut(s) 375, 595, 994, 1059, 1078
BseGI GGATG 2 cut(s) 320, 1245
BseJI GATNNNNATC 1 cut(s) 604
BseLI CCNNNNNNNGG 5 cut(s) 296, 375, 376, 702, 1084
BseMII CTCAG 4 cut(s) 72, 164, 549, 976
BseRI GAGGAG 1 cut(s) 340
BseYI CCCAGC 1 cut(s) 622
Bsh1236I CGCG 2 cut(s) 692, 1085
Bsh1285I CGRYCG 2 cut(s) 576, 766
BshFI GGCC 1 cut(s) 1039
BshNI GGYRCC 1 cut(s) 884
BshTI ACCGGT 1 cut(s) 575
BsiEI CGRYCG 2 cut(s) 576, 766
BsiHKAI GWGCWC 1 cut(s) 264
BsiHKCI CYCGRG 2 cut(s) 375, 1048
BslFI GGGAC 1 cut(s) 1012
BslI CCNNNNNNNGG 5 cut(s) 296, 375, 376, 702, 1084
BsmAI GTCTC 1 cut(s) 473
BsmBI CGTCTC 1 cut(s) 473
BsmFI GGGAC 1 cut(s) 1012
BsnI GGCC 1 cut(s) 1039
BsoBI CYCGRG 2 cut(s) 375, 1048
Bsp119I TTCGAA 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 6 cut(s) 217, 299, 403, 599, 847, 1183
Bsp19I CCATGG 1 cut(s) 1059
BspACI CCGC 2 cut(s) 393, 1085
BspANI GGCC 1 cut(s) 1039
BspCNI CTCAG 4 cut(s) 71, 163, 548, 975
BspFNI CGCG 2 cut(s) 692, 1085
BspHI TCATGA 1 cut(s) 475
BspLI GGNNCC 5 cut(s) 301, 368, 886, 909, 1132
BspMI ACCTGC 1 cut(s) 851
BspPI GGATC 6 cut(s) 212, 294, 307, 398, 607, 855
BspT104I TTCGAA 1 cut(s) 52
BspT107I GGYRCC 1 cut(s) 884
BsrFI RCCGGY 1 cut(s) 575
BssAI RCCGGY 1 cut(s) 575
BssECI CCNNGG 5 cut(s) 375, 595, 994, 1059, 1078
BssMI GATC 6 cut(s) 217, 299, 403, 599, 847, 1183
BssNI GRCGYC 1 cut(s) 746
BssT1I CCWWGG 2 cut(s) 994, 1059
Bst2UI CCWGG 1 cut(s) 703
Bst4CI ACNGT 3 cut(s) 199, 781, 1113
Bst6I CTCTTC 1 cut(s) 128
BstACI GRCGYC 1 cut(s) 746
BstBAI YACGTR 2 cut(s) 330, 427
BstBI TTCGAA 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 5 cut(s) 58, 150, 295, 535, 962
BstDSI CCRYGG 2 cut(s) 1059, 1078
BstEII GGTNACC 1 cut(s) 1214
BstF5I GGATG 2 cut(s) 320, 1245
BstFNI CGCG 2 cut(s) 692, 1085
BstHHI GCGC 1 cut(s) 1085
BstKTI GATC 6 cut(s) 220, 302, 406, 602, 850, 1186
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 6 cut(s) 217, 299, 403, 599, 847, 1183
BstMCI CGRYCG 2 cut(s) 576, 766
BstMWI GCNNNNNNNGC 1 cut(s) 268
BstNI CCWGG 1 cut(s) 703
BstPI GGTNACC 1 cut(s) 1214
BstSNI TACGTA 1 cut(s) 330
BstUI CGCG 2 cut(s) 692, 1085
BstV2I GAAGAC 2 cut(s) 147, 416
BstX2I RGATCY 2 cut(s) 299, 599
BstYI RGATCY 2 cut(s) 299, 599
BsuRI GGCC 1 cut(s) 1039
BtgI CCRYGG 2 cut(s) 1059, 1078
BtsCI GGATG 2 cut(s) 320, 1245
BtsI GCAGTG 2 cut(s) 274, 918
BtsIMutI CAGTG 2 cut(s) 274, 918
BveI ACCTGC 1 cut(s) 851
Cac8I GCNNGC 1 cut(s) 260
CaiI CAGNNNCTG 1 cut(s) 1111
CciI TCATGA 1 cut(s) 475
CfoI GCGC 1 cut(s) 1085
Cfr10I RCCGGY 1 cut(s) 575
Cfr13I GGNCC 6 cut(s) 366, 710, 781, 908, 1006, 1038
Cfr9I CCCGGG 1 cut(s) 375
CseI GACGC 4 cut(s) 455, 681, 698, 754
Csp6I GTAC 6 cut(s) 331, 372, 513, 842, 885, 1117
CspAI ACCGGT 1 cut(s) 575
CspCI CAANNNNNGTGG 2 cut(s) 1217, 1252
CviAII CATG 4 cut(s) 267, 399, 476, 1060
CviQI GTAC 6 cut(s) 331, 372, 513, 842, 885, 1117
DdeI CTNAG 5 cut(s) 58, 150, 295, 535, 962
DpnI GATC 6 cut(s) 219, 301, 405, 601, 849, 1185
DpnII GATC 6 cut(s) 217, 299, 403, 599, 847, 1183
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Ecl136II GAGCTC 1 cut(s) 262
Eco105I TACGTA 1 cut(s) 330
Eco130I CCWWGG 2 cut(s) 994, 1059
Eco24I GRGCYC 1 cut(s) 264
Eco47I GGWCC 5 cut(s) 366, 710, 781, 908, 1006
Eco53kI GAGCTC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 144
Eco72I CACGTG 1 cut(s) 427
Eco88I CYCGRG 2 cut(s) 375, 1048
Eco91I GGTNACC 1 cut(s) 1214
EcoICRI GAGCTC 1 cut(s) 262
EcoO109I RGGNCCY 1 cut(s) 366
EcoO65I GGTNACC 1 cut(s) 1214
EcoRII CCWGG 1 cut(s) 701
EcoT14I CCWWGG 2 cut(s) 994, 1059
EcoT38I GRGCYC 1 cut(s) 264
ErhI CCWWGG 2 cut(s) 994, 1059
Esp3I CGTCTC 1 cut(s) 473
FaeI CATG 4 cut(s) 270, 402, 479, 1063
FaqI GGGAC 1 cut(s) 1012
FatI CATG 4 cut(s) 266, 398, 475, 1059
FauI CCCGC 1 cut(s) 400
FblI GTMKAC 1 cut(s) 972
FokI GGATG 2 cut(s) 307, 1252
FriOI GRGCYC 1 cut(s) 264
FspBI CTAG 1 cut(s) 1302
GlaI GCGC 1 cut(s) 1084
GsaI CCCAGC 1 cut(s) 626
HaeIII GGCC 1 cut(s) 1039
HgaI GACGC 4 cut(s) 455, 681, 698, 754
HhaI GCGC 1 cut(s) 1085
Hin1I GRCGYC 1 cut(s) 746
Hin1II CATG 4 cut(s) 270, 402, 479, 1063
Hin6I GCGC 1 cut(s) 1083
HinP1I GCGC 1 cut(s) 1083
HincII GTYRAC 3 cut(s) 616, 1029, 1307
HindII GTYRAC 3 cut(s) 616, 1029, 1307
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 6 cut(s) 8, 54, 533, 662, 795, 878
HpaI GTTAAC 1 cut(s) 616
HphI GGTGA 4 cut(s) 187, 345, 698, 1208
Hpy166II GTNNAC 7 cut(s) 616, 916, 973, 1029, 1055, 1126, 1307
Hpy188III TCNNGA 3 cut(s) 235, 245, 476
Hpy8I GTNNAC 7 cut(s) 616, 916, 973, 1029, 1055, 1126, 1307
Hpy99I CGWCG 2 cut(s) 215, 748
HpyAV CCTTC 3 cut(s) 455, 785, 1136
HpyCH4III ACNGT 3 cut(s) 199, 781, 1113
HpyCH4IV ACGT 8 cut(s) 86, 329, 426, 482, 896, 1169, 1233, 1284
HpyCH4V TGCA 4 cut(s) 93, 279, 363, 648
HpyF10VI GCNNNNNNNGC 1 cut(s) 268
HpyF3I CTNAG 5 cut(s) 58, 150, 295, 535, 962
HpySE526I ACGT 8 cut(s) 86, 329, 426, 482, 896, 1169, 1233, 1284
Hsp92I GRCGYC 1 cut(s) 746
Hsp92II CATG 4 cut(s) 270, 402, 479, 1063
HspAI GCGC 1 cut(s) 1083
KpnI GGTACC 1 cut(s) 888
KspAI GTTAAC 1 cut(s) 616
Kzo9I GATC 6 cut(s) 217, 299, 403, 599, 847, 1183
LmnI GCTCC 4 cut(s) 353, 551, 857, 1130
LweI GCATC 1 cut(s) 553
MaeI CTAG 1 cut(s) 1302
MaeII ACGT 8 cut(s) 86, 329, 426, 482, 896, 1169, 1233, 1284
MaeIII GTNAC 8 cut(s) 187, 199, 499, 686, 750, 1013, 1214, 1280
MalI GATC 6 cut(s) 219, 301, 405, 601, 849, 1185
MboI GATC 6 cut(s) 217, 299, 403, 599, 847, 1183
MboII GAAGA 8 cut(s) 41, 93, 115, 147, 150, 421, 572, 1163
MflI RGATCY 2 cut(s) 299, 599
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 7 cut(s) 43, 357, 550, 635, 785, 890, 1042
MluI ACGCGT 1 cut(s) 690
MlyI GAGTC 1 cut(s) 527
MmeI TCCRAC 1 cut(s) 1119
MnlI CCTC 8 cut(s) 90, 159, 234, 334, 361, 550, 676, 738
MseI TTAA 7 cut(s) 309, 542, 581, 615, 926, 1070, 1319
MspA1I CMGCKG 1 cut(s) 622
MvaI CCWGG 1 cut(s) 703
MvnI CGCG 2 cut(s) 692, 1085
MwoI GCNNNNNNNGC 1 cut(s) 268
NcoI CCATGG 1 cut(s) 1059
NdeII GATC 6 cut(s) 217, 299, 403, 599, 847, 1183
NlaIII CATG 4 cut(s) 270, 402, 479, 1063
NlaIV GGNNCC 5 cut(s) 301, 368, 886, 909, 1132
NmuCI GTSAC 4 cut(s) 199, 499, 686, 1214
NspV TTCGAA 1 cut(s) 52
PagI TCATGA 1 cut(s) 475
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 1281
PfeI GAWTC 5 cut(s) 8, 54, 662, 795, 878
PinAI ACCGGT 1 cut(s) 575
PleI GAGTC 1 cut(s) 527
PmaCI CACGTG 1 cut(s) 427
PmlI CACGTG 1 cut(s) 427
PpsI GAGTC 1 cut(s) 527
Ppu21I YACGTR 2 cut(s) 330, 427
PpuMI RGGWCCY 1 cut(s) 366
Psp124BI GAGCTC 1 cut(s) 264
Psp1406I AACGTT 1 cut(s) 86
Psp5II RGGWCCY 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 701
PspCI CACGTG 1 cut(s) 427
PspEI GGTNACC 1 cut(s) 1214
PspFI CCCAGC 1 cut(s) 622
PspGI CCWGG 1 cut(s) 701
PspN4I GGNNCC 5 cut(s) 301, 368, 886, 909, 1132
PspPI GGNCC 6 cut(s) 366, 710, 781, 908, 1006, 1038
PspPPI RGGWCCY 1 cut(s) 366
PstNI CAGNNNCTG 1 cut(s) 1111
PsuI RGATCY 2 cut(s) 299, 599
PvuII CAGCTG 1 cut(s) 622
RsaI GTAC 6 cut(s) 332, 373, 514, 843, 886, 1118
RsaNI GTAC 6 cut(s) 331, 372, 513, 842, 885, 1117
SacI GAGCTC 1 cut(s) 264
SaqAI TTAA 7 cut(s) 309, 542, 581, 615, 926, 1070, 1319
Sau3AI GATC 6 cut(s) 217, 299, 403, 599, 847, 1183
Sau96I GGNCC 6 cut(s) 366, 710, 781, 908, 1006, 1038
SchI GAGTC 1 cut(s) 527
SduI GDGCHC 1 cut(s) 264
SfaNI GCATC 1 cut(s) 553
SfuI TTCGAA 1 cut(s) 52
SinI GGWCC 5 cut(s) 366, 710, 781, 908, 1006
SmaI CCCGGG 1 cut(s) 377
SnaBI TACGTA 1 cut(s) 330
Sse9I AATT 7 cut(s) 43, 357, 550, 635, 785, 890, 1042
SsiI CCGC 2 cut(s) 393, 1085
SspMI CTAG 1 cut(s) 1302
SstI GAGCTC 1 cut(s) 264
StyI CCWWGG 2 cut(s) 994, 1059
TaaI ACNGT 3 cut(s) 199, 781, 1113
TaiI ACGT 8 cut(s) 89, 332, 429, 485, 899, 1172, 1236, 1287
TaqI TCGA 6 cut(s) 52, 236, 459, 572, 743, 762
TaqII GACCGA 1 cut(s) 698
TasI AATT 7 cut(s) 43, 357, 550, 635, 785, 890, 1042
TfiI GAWTC 5 cut(s) 8, 54, 662, 795, 878
Tru1I TTAA 7 cut(s) 309, 542, 581, 615, 926, 1070, 1319
Tru9I TTAA 7 cut(s) 309, 542, 581, 615, 926, 1070, 1319
TscAI CASTG 2 cut(s) 281, 925
TseFI GTSAC 4 cut(s) 199, 499, 686, 1214
Tsp45I GTSAC 4 cut(s) 199, 499, 686, 1214
TspDTI ATGAA 4 cut(s) 162, 309, 387, 605
TspGWI ACGGA 3 cut(s) 292, 1067, 1143
TspMI CCCGGG 1 cut(s) 375
TspRI CASTG 2 cut(s) 281, 925
VpaK11BI GGWCC 5 cut(s) 366, 710, 781, 908, 1006
XapI RAATTY 2 cut(s) 43, 635
XmaI CCCGGG 1 cut(s) 375
XmiI GTMKAC 1 cut(s) 972
XspI CTAG 1 cut(s) 1302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.