Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001214

Physical Location & Seq

Genomic Coordinates Forward (+)

45663729 .. 45667990

Gene Structure 4262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0338400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1905 bp

ATGAAACAAGGAGGTGGCCATGCTTTATTCACTGCAGAATGTTCACATTCTTTTCATTTCCACTGCATTGCATCAAATGTAAAACATGGCAACCAAATCTGCCCAGTTTGTAGGGCAAAATGGAAGGAAATCCCTGTGCAAGGTCCCACTGCGGATCCTTCCCCTGGAAGGGCACCTATTAGTCCAGTAGGTTGGCCTCAAAATGATGCTTTGATGACAGTTGTTCGCCGGCTACCTCCTCCTCGAAGAGATTTGAGCCGAAGGCACATTGTGCCACTGTTTCCTCCTGCTGAGCCAGGCATATTCAATGATGATGAATCCTTGGATCACCAAACTGTGGCTGCTGAGAGAAGCTCTTCCAATAAAAATTCTGCAGATGAAAATTTTTTTAGAACAATAGAAATAAAAACATACCCTGAGGTTTCGGCTGTTTCAAAATCCAAATCTTTTGACAACTTTATGGTTTTGGTCAATCTGAAAGCGGCTGCTTCTACTACAACAGAAAATCCTAGCAGAAATCAATCCAGCTTGCCACAATTTTCTCAGAATCGTCGTGCTGCAGTAGACCTGGTCACAGTGCTTGACATCAGTGGTAGCATGGCAGGAACTAAGCTTGCATTGCTGAAACGGGCCATGGGTTTTGTAATACAGAATCTTGGCTCCAATGACAGGCTGTCAGTTATTGCCTTCTCTTCGACAGCTCGTCGCCTCTTTCCACTCCGCCGAATGACTGACACTGGACGCCAGCAGGCTCTGCAAGCTGTCAACTCTTTGGTTGCAAATGGGGGGACCAACATTGCCGAAGGCTTAAGAAAGGGTGGCAAGATATTGGAAGATCGGAGGGGAAAGAATCCTGTTGCCAGCATAATACTGTTGTCTGATGGTCAGGACACTTATACTGTCAGTGGGTCTGCGGCAAACCAAGCTCAACCAAATTATCAGTTGCTCCTCCCTTTGTCTATTCACAGTGGTGACAACACAGGCTTCCAGATTCCAGTGCATGCATTTGGGTTTGGTGCAGATCACGATGCATCATCGATGCATTCAATTTCAGAGATATCTGGAGGGACCTTTTCTTTCATTGAGACTGAAGCCGTTATCCAGGATGCATTTGCACAGTGCATTGGGGGTCTTTTGAGCGTTGTGGTACAAGAGTTGCAGGTGGAAGTGGAGTGTGTGAATACGAATGTCTGCCTTGGTTCACTAAAGGCTGGAAGTTACCCAAGTCGTGTAATGGTTGGTGGACGCAAAGGGTCTATTGATGTTGGAGATCTATATGCTGAGGAAGAGAGGGATTTTCTAGTTTCTGTTAATGTCCCAGCAGAGTTTTCTAGCAATCTAACATCATTGATCAAGGTGAGATGCATTTACAAGGATCCCTTAGCTAAAGAAATGGCAACATTAGAGAGTGAAGAAGTTGGAATTGAGAGACCTGCAGTGGCTGGACAAGTAGTAGTCTCAATAGAAGTGGACAGGCAACGTAATAGGCTCCACGCTGCTGAGGCAATGGCACAGGCACGAGCTGCAGCTGAGCGGGGAGACTTAGCTGGTGCAGCTTTAATCCTTGAAGATTGTCGAAGGGTATTGTCAGAGACCGTGTCAGCAAAATCTAATGACCGCCTGTGTGTAGCATTGGATGCCGAGCTCAAGGAAATGCAAGAGAGGATGGCAAGTAGGCATGTATACGAGGCATCTGGTAGGGCATACATTCTTTCAGGACTGAGCTCACACTCATGGCAAAGAGCAACAGCAAGAGGTGACTCCACCGACGGTTCAAGCCTTGTTCAGTCCTATCAAACCCCATCAATGGTTGAGATGCTTACTCGATCTCAGGCTATGTTGTTGGGCAGTCCATCAGCTCAGAGGCTTATCCGACCATTATGTTCACAACCGAAGCCGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051603 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1117 zf-RING_2 zinc_ribbon_9

Protein Analysis

634

Amino Acids

68.55

Weight (kDa)

7.61

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	10 - 38	1.3e-06	RING-H2 zinc finger domain
VWA_CoxE	PF05762	176 - 305	3.4e-09	VWA domain containing CoxE-like protein
VWA	PF00092	189 - 371	2.2e-22	von Willebrand factor type A domain
VWA_3	PF13768	189 - 360	8.6e-18	von Willebrand factor type A domain
VWA_2	PF13519	190 - 296	1.3e-19	von Willebrand factor type A domain
WAV3_C	PF25243	490 - 560	6.8e-06	E3 ubiquitin-protein ligase WAV3-like, C-terminal domain
Vwaint	PF14624	539 - 611	8.7e-21	VWA / Hh protein intein-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39720 AT2G39720 AT3G46620 AT5G59550 AT5G59550
fragaria_vesca	FvH4_3g36860 FvH4_6g13340 FvH4_7g22850
malus_domestica	MD01G1136700.v1.1 MD03G1087100.v1.1 MD04G1131800.v1.1 MD07G1201700.v1.1 MD10G1074300.v1.1 MD11G1012900.v1.1 MD11G1096200.v1.1 MD12G1144900.v1.1
prunus_persica	Prupe.2G238300_v2.0.a1 Prupe.6G071800_v2.0.a1 Prupe.6G258400_v2.0.a1
pyrus_communis	pycom01g15740 pycom03g06910 pycom04g11990 pycom07g18870 pycom11g08150 pycom12g13930
rosa_chinensis	RchiOBHm_Chr1g0368011 RchiOBHm_Chr3g0466231 RchiOBHm_Chr5g0066071
rosa_laevigata	RLG00000024595 RLG00000027247 RLG00000035839
rosa_multiflora	Rmu_co8242689.1_g000001 Rmu_co8418295.1_g000001 Rmu_sc0000350.1_g000012 Rmu_sc0002406.1_g000005 Rmu_sc0005240.1_g000003 Rmu_sc0005240.1_g000004
rosa_roxburghii	Rroxscaffold_1G00014940 Rroxscaffold_4G00288940 Rroxscaffold_6G00414710
rosa_rugosa	Rorug01G0338400 Rorug03G0080500 Rorug05G0376200
rosa_samantha	Rh1AG345200 Rh1BG307500 Rh1CG323100 Rh1DG339600 Rh3BG147700 Rh3DG148400 Rh5AG434600 Rh5BG450900 Rh5CG473200 Rh5DG464500
rosa_wichuraiana	Rw1G030720 Rw3G011940 Rw5G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1150
Acc36I	ACCTGC	2 cut(s)	1150, 1441
AccB1I	GGYRCC	1 cut(s)	172
AccB7I	CCANNNNNTGG	1 cut(s)	337
AccBSI	CCGCTC	1 cut(s)	1534
AccI	GTMKAC	2 cut(s)	564, 1683
AciI	CCGC	6 cut(s)	152, 482, 721, 914, 1534, 1618
AclWI	GGATC	5 cut(s)	149, 162, 333, 1370, 1383
AcoI	YGGCCR	1 cut(s)	16
AcsI	RAATTY	2 cut(s)	367, 382
AcuI	CTGAAG	1 cut(s)	1110
AcyI	GRCGYC	1 cut(s)	742
AdeI	CACNNNGTG	1 cut(s)	271
AfaI	GTAC	1 cut(s)	1149
AfiI	CCNNNNNNNGG	7 cut(s)	140, 164, 168, 169, 337, 669, 1807
AflII	CTTAAG	1 cut(s)	808
AgsI	TTSAA	5 cut(s)	307, 435, 1047, 1568, 1776
AhdI	GACNNNNNGTC	2 cut(s)	673, 702
AjnI	CCWGG	4 cut(s)	163, 295, 567, 1101
AleI	CACNNNNGTG	1 cut(s)	969
Alw21I	GWGCWC	2 cut(s)	1647, 1727
Alw26I	GTCTC	5 cut(s)	1079, 1423, 1462, 1533, 1586
AlwI	GGATC	5 cut(s)	149, 162, 333, 1370, 1383
AlwNI	CAGNNNCTG	2 cut(s)	754, 1442
AoxI	GGCC	3 cut(s)	16, 194, 630
ApeKI	GCWGC	7 cut(s)	341, 485, 557, 1496, 1523, 1526, 1553
ApoI	RAATTY	2 cut(s)	367, 382
Asp700I	GAANNNNTTC	1 cut(s)	355
AspS9I	GGNCC	4 cut(s)	143, 630, 789, 1068
AsuHPI	GGTGA	4 cut(s)	320, 983, 1369, 1769
AvaII	GGWCC	3 cut(s)	143, 789, 1068
AxyI	CCTNAGG	1 cut(s)	417
BaeGI	GKGCMC	1 cut(s)	175
BaeI	ACNNNNGTAYC	2 cut(s)	1139, 1172
BalI	TGGCCA	1 cut(s)	18
BamHI	GGATCC	2 cut(s)	154, 1375
BanI	GGYRCC	1 cut(s)	172
BanII	GRGCYC	2 cut(s)	1647, 1727
BauI	CACGAG	1 cut(s)	1518
Bbv12I	GWGCWC	2 cut(s)	1647, 1727
BbvCI	CCTCAGC	2 cut(s)	1281, 1500
BbvI	GCAGC	7 cut(s)	328, 472, 544, 1483, 1510, 1538, 1565
BccI	CCATC	4 cut(s)	875, 1660, 1810, 1861
BceAI	ACGGC	1 cut(s)	1079
BciT130I	CCWGG	4 cut(s)	165, 297, 569, 1103
BclI	TGATCA	1 cut(s)	1350
BcoDI	GTCTC	5 cut(s)	1079, 1423, 1462, 1533, 1586
BfaI	CTAG	3 cut(s)	510, 1301, 1332
BfmI	CTRYAG	5 cut(s)	33, 372, 558, 1434, 1524
BfrI	CTTAAG	1 cut(s)	808
BfuAI	ACCTGC	2 cut(s)	1150, 1441
BglII	AGATCT	1 cut(s)	1270
BisI	GCNGC	9 cut(s)	342, 483, 486, 558, 915, 1497, 1524, 1527, 1554
BlpI	GCTNAGC	2 cut(s)	291, 1530
BlsI	GCNGC	9 cut(s)	343, 484, 487, 559, 916, 1498, 1525, 1528, 1555
Bme1390I	CCNGG	4 cut(s)	165, 297, 569, 1103
Bme18I	GGWCC	3 cut(s)	143, 789, 1068
BmeRI	GACNNNNNGTC	2 cut(s)	673, 702
BmgT120I	GGNCC	4 cut(s)	143, 630, 789, 1068
BmiI	GGNNCC	8 cut(s)	145, 156, 174, 661, 790, 1069, 1377, 1490
BmrFI	CCNGG	4 cut(s)	165, 297, 569, 1103
BmrI	ACTGGG	1 cut(s)	98
BmuI	ACTGGG	1 cut(s)	98
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
BpmI	CTGGAG	1 cut(s)	1083
Bpu10I	CCTNAGC	3 cut(s)	1281, 1381, 1500
Bpu1102I	GCTNAGC	2 cut(s)	291, 1530
BpuEI	CTTGAG	1 cut(s)	1631
Bsa29I	ATCGAT	1 cut(s)	1037
BsaHI	GRCGYC	1 cut(s)	742
BsaI	GGTCTC	2 cut(s)	1423, 1586
BsaJI	CCNNGG	5 cut(s)	163, 321, 633, 1195, 1898
Bsc4I	CCNNNNNNNGG	7 cut(s)	140, 164, 168, 169, 337, 669, 1807
Bse118I	RCCGGY	1 cut(s)	228
Bse1I	ACTGG	4 cut(s)	104, 185, 742, 995
Bse21I	CCTNAGG	1 cut(s)	417
Bse3DI	GCAATG	4 cut(s)	66, 617, 795, 1512
BseBI	CCWGG	4 cut(s)	165, 297, 569, 1103
BseCI	ATCGAT	1 cut(s)	1037
BseDI	CCNNGG	5 cut(s)	163, 321, 633, 1195, 1898
BseGI	GGATG	3 cut(s)	1111, 1642, 1671
BseLI	CCNNNNNNNGG	7 cut(s)	140, 164, 168, 169, 337, 669, 1807
BseMI	GCAATG	4 cut(s)	66, 617, 795, 1512
BseNI	ACTGG	4 cut(s)	104, 185, 742, 995
BseRI	GAGGAG	3 cut(s)	228, 231, 938
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	7 cut(s)	328, 472, 544, 1483, 1510, 1538, 1565
BseYI	CCCAGC	1 cut(s)	1318
BsgI	GTGCAG	2 cut(s)	1038, 1572
BshFI	GGCC	3 cut(s)	18, 196, 632
BshNI	GGYRCC	1 cut(s)	172
BshVI	ATCGAT	1 cut(s)	1037
BsiHKAI	GWGCWC	2 cut(s)	1647, 1727
BsiSI	CCGG	1 cut(s)	229
BslFI	GGGAC	4 cut(s)	129, 802, 1081, 1301
BslI	CCNNNNNNNGG	7 cut(s)	140, 164, 168, 169, 337, 669, 1807
BsmAI	GTCTC	5 cut(s)	1079, 1423, 1462, 1533, 1586
BsmFI	GGGAC	4 cut(s)	129, 802, 1081, 1301
BsmI	GAATGC	1 cut(s)	1042
BsnI	GGCC	3 cut(s)	18, 196, 632
Bso31I	GGTCTC	2 cut(s)	1423, 1586
Bsp1286I	GDGCHC	3 cut(s)	175, 1647, 1727
Bsp143I	GATC	8 cut(s)	154, 325, 835, 1021, 1270, 1350, 1375, 1826
Bsp1720I	GCTNAGC	2 cut(s)	291, 1530
Bsp19I	CCATGG	1 cut(s)	633
BspACI	CCGC	6 cut(s)	152, 482, 721, 914, 1534, 1618
BspANI	GGCC	3 cut(s)	18, 196, 632
BspDI	ATCGAT	1 cut(s)	1037
BspLI	GGNNCC	8 cut(s)	145, 156, 174, 661, 790, 1069, 1377, 1490
BspMAI	CTGCAG	5 cut(s)	37, 376, 562, 1438, 1528
BspMI	ACCTGC	2 cut(s)	1150, 1441
BspPI	GGATC	5 cut(s)	149, 162, 333, 1370, 1383
BspQI	GCTCTTC	1 cut(s)	361
BspT107I	GGYRCC	1 cut(s)	172
BspTI	CTTAAG	1 cut(s)	808
BspTNI	GGTCTC	2 cut(s)	1423, 1586
BsrBI	CCGCTC	1 cut(s)	1534
BsrDI	GCAATG	4 cut(s)	66, 617, 795, 1512
BsrFI	RCCGGY	1 cut(s)	228
BsrI	ACTGG	4 cut(s)	104, 185, 742, 995
BssAI	RCCGGY	1 cut(s)	228
BssECI	CCNNGG	5 cut(s)	163, 321, 633, 1195, 1898
BssMI	GATC	8 cut(s)	154, 325, 835, 1021, 1270, 1350, 1375, 1826
BssNAI	GTATAC	1 cut(s)	1684
BssNI	GRCGYC	1 cut(s)	742
BssSI	CACGAG	1 cut(s)	1518
BssT1I	CCWWGG	3 cut(s)	321, 633, 1195
Bst1107I	GTATAC	1 cut(s)	1684
Bst2BI	CACGAG	1 cut(s)	1518
Bst2UI	CCWGG	4 cut(s)	165, 297, 569, 1103
Bst6I	CTCTTC	4 cut(s)	241, 361, 697, 1281
BstACI	GRCGYC	1 cut(s)	742
BstAFI	CTTAAG	1 cut(s)	808
BstAPI	GCANNNNNTGC	4 cut(s)	271, 754, 1523, 1637
BstC8I	GCNNGC	8 cut(s)	230, 530, 615, 746, 750, 759, 862, 1002
BstDSI	CCRYGG	1 cut(s)	633
BstENI	CCTNNNNNAGG	1 cut(s)	138
BstF5I	GGATG	3 cut(s)	1111, 1642, 1671
BstKTI	GATC	8 cut(s)	157, 328, 838, 1024, 1273, 1353, 1378, 1829
BstMAI	GTCTC	5 cut(s)	1079, 1423, 1462, 1533, 1586
BstMBI	GATC	8 cut(s)	154, 325, 835, 1021, 1270, 1350, 1375, 1826
BstMWI	GCNNNNNNNGC	9 cut(s)	271, 619, 754, 758, 923, 1502, 1523, 1553, 1637
BstNI	CCWGG	4 cut(s)	165, 297, 569, 1103
BstNSI	RCATGY	2 cut(s)	1004, 1682
BstSCI	CCNGG	4 cut(s)	163, 295, 567, 1101
BstSFI	CTRYAG	5 cut(s)	33, 372, 558, 1434, 1524
BstSLI	GKGCMC	1 cut(s)	175
BstV1I	GCAGC	7 cut(s)	328, 472, 544, 1483, 1510, 1538, 1565
BstX2I	RGATCY	3 cut(s)	154, 1270, 1375
BstXI	CCANNNNNNTGG	1 cut(s)	192
BstYI	RGATCY	3 cut(s)	154, 1270, 1375
BstZ17I	GTATAC	1 cut(s)	1684
Bsu15I	ATCGAT	1 cut(s)	1037
Bsu36I	CCTNAGG	1 cut(s)	417
BsuRI	GGCC	3 cut(s)	18, 196, 632
BsuTUI	ATCGAT	1 cut(s)	1037
BtgI	CCRYGG	1 cut(s)	633
BtsCI	GGATG	3 cut(s)	1111, 1642, 1671
BtsI	GCAGTG	4 cut(s)	30, 61, 147, 1443
BveI	ACCTGC	2 cut(s)	1150, 1441
Cac8I	GCNNGC	8 cut(s)	230, 530, 615, 746, 750, 759, 862, 1002
CaiI	CAGNNNCTG	2 cut(s)	754, 1442
Cfr10I	RCCGGY	1 cut(s)	228
Cfr13I	GGNCC	4 cut(s)	143, 630, 789, 1068
ClaI	ATCGAT	1 cut(s)	1037
CseI	GACGC	2 cut(s)	750, 1254
CsiI	ACCWGGT	1 cut(s)	567
Csp6I	GTAC	1 cut(s)	1148
CspCI	CAANNNNNGTGG	2 cut(s)	1449, 1484
CviAII	CATG	7 cut(s)	20, 86, 598, 634, 1001, 1679, 1734
CviQI	GTAC	1 cut(s)	1148
DpnI	GATC	8 cut(s)	156, 327, 837, 1023, 1272, 1352, 1377, 1828
DpnII	GATC	8 cut(s)	154, 325, 835, 1021, 1270, 1350, 1375, 1826
DraIII	CACNNNGTG	1 cut(s)	271
DriI	GACNNNNNGTC	2 cut(s)	673, 702
EaeI	YGGCCR	1 cut(s)	16
Eam1104I	CTCTTC	4 cut(s)	241, 361, 697, 1281
Eam1105I	GACNNNNNGTC	2 cut(s)	673, 702
EarI	CTCTTC	4 cut(s)	241, 361, 697, 1281
EciI	GGCGGA	1 cut(s)	710
Ecl136II	GAGCTC	2 cut(s)	1645, 1725
Eco130I	CCWWGG	3 cut(s)	321, 633, 1195
Eco24I	GRGCYC	2 cut(s)	1647, 1727
Eco31I	GGTCTC	2 cut(s)	1423, 1586
Eco32I	GATATC	1 cut(s)	1059
Eco47I	GGWCC	3 cut(s)	143, 789, 1068
Eco53kI	GAGCTC	2 cut(s)	1645, 1725
Eco57I	CTGAAG	1 cut(s)	1110
Eco81I	CCTNAGG	1 cut(s)	417
EcoICRI	GAGCTC	2 cut(s)	1645, 1725
EcoNI	CCTNNNNNAGG	1 cut(s)	138
EcoO109I	RGGNCCY	2 cut(s)	143, 1068
EcoRII	CCWGG	4 cut(s)	163, 295, 567, 1101
EcoRV	GATATC	1 cut(s)	1059
EcoT14I	CCWWGG	3 cut(s)	321, 633, 1195
EcoT22I	ATGCAT	5 cut(s)	1006, 1033, 1044, 1111, 1367
EcoT38I	GRGCYC	2 cut(s)	1647, 1727
ErhI	CCWWGG	3 cut(s)	321, 633, 1195
FaeI	CATG	7 cut(s)	23, 89, 601, 637, 1004, 1682, 1737
FalI	AAGNNNNNCTT	2 cut(s)	1364, 1396
FaqI	GGGAC	4 cut(s)	129, 802, 1081, 1301
FatI	CATG	7 cut(s)	19, 85, 597, 633, 1000, 1678, 1733
FauI	CCCGC	1 cut(s)	1527
FbaI	TGATCA	1 cut(s)	1350
FblI	GTMKAC	2 cut(s)	564, 1683
Fnu4HI	GCNGC	9 cut(s)	342, 483, 486, 558, 915, 1497, 1524, 1527, 1554
FokI	GGATG	3 cut(s)	1118, 1649, 1678
FriOI	GRGCYC	2 cut(s)	1647, 1727
Fsp4HI	GCNGC	9 cut(s)	342, 483, 486, 558, 915, 1497, 1524, 1527, 1554
FspBI	CTAG	3 cut(s)	510, 1301, 1332
GluI	GCNGC	9 cut(s)	342, 483, 486, 558, 915, 1497, 1524, 1527, 1554
GsaI	CCCAGC	1 cut(s)	1322
GsuI	CTGGAG	1 cut(s)	1083
HaeIII	GGCC	3 cut(s)	18, 196, 632
HapII	CCGG	1 cut(s)	229
HgaI	GACGC	2 cut(s)	750, 1254
Hin1I	GRCGYC	1 cut(s)	742
Hin1II	CATG	7 cut(s)	23, 89, 601, 637, 1004, 1682, 1737
HincII	GTYRAC	1 cut(s)	766
HindII	GTYRAC	1 cut(s)	766
HindIII	AAGCTT	1 cut(s)	611
HinfI	GANTC	6 cut(s)	317, 547, 652, 850, 991, 1760
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	4 cut(s)	320, 983, 1369, 1769
Hpy166II	GTNNAC	8 cut(s)	44, 565, 766, 1202, 1244, 1471, 1684, 1886
Hpy188I	TCNGA	8 cut(s)	477, 546, 840, 880, 1054, 1591, 1863, 1874
Hpy188III	TCNNGA	5 cut(s)	887, 988, 1025, 1062, 1716
Hpy8I	GTNNAC	8 cut(s)	44, 565, 766, 1202, 1244, 1471, 1684, 1886
Hpy99I	CGWCG	3 cut(s)	555, 708, 1772
HpyAV	CCTTC	7 cut(s)	118, 162, 168, 255, 697, 797, 1572
HpyCH4IV	ACGT	1 cut(s)	1480
HpyF10VI	GCNNNNNNNGC	9 cut(s)	271, 619, 754, 758, 923, 1502, 1523, 1553, 1637
HpySE526I	ACGT	1 cut(s)	1480
Hsp92I	GRCGYC	1 cut(s)	742
Hsp92II	CATG	7 cut(s)	23, 89, 601, 637, 1004, 1682, 1737
KroI	GCCGGC	1 cut(s)	228
KroNI	GCCGGC	1 cut(s)	230
Ksp22I	TGATCA	1 cut(s)	1350
Kzo9I	GATC	8 cut(s)	154, 325, 835, 1021, 1270, 1350, 1375, 1826
LguI	GCTCTTC	1 cut(s)	361
LmnI	GCTCC	3 cut(s)	665, 951, 1494
Lsp1109I	GCAGC	7 cut(s)	328, 472, 544, 1483, 1510, 1538, 1565
MabI	ACCWGGT	1 cut(s)	567
MaeI	CTAG	3 cut(s)	510, 1301, 1332
MaeII	ACGT	1 cut(s)	1480
MaeIII	GTNAC	4 cut(s)	571, 971, 1217, 1757
MalI	GATC	8 cut(s)	156, 327, 837, 1023, 1272, 1352, 1377, 1828
MbiI	CCGCTC	1 cut(s)	1534
MboI	GATC	8 cut(s)	154, 325, 835, 1021, 1270, 1350, 1375, 1826
MboII	GAAGA	7 cut(s)	258, 348, 684, 845, 1298, 1424, 1580
MflI	RGATCY	3 cut(s)	154, 1270, 1375
MhlI	GDGCHC	3 cut(s)	175, 1647, 1727
MlsI	TGGCCA	1 cut(s)	18
MluCI	AATT	6 cut(s)	367, 382, 536, 934, 1047, 1422
MluNI	TGGCCA	1 cut(s)	18
MlyI	GAGTC	1 cut(s)	1754
MmeI	TCCRAC	3 cut(s)	1246, 1399, 1897
Mox20I	TGGCCA	1 cut(s)	18
Mph1103I	ATGCAT	5 cut(s)	1006, 1033, 1044, 1111, 1367
MroNI	GCCGGC	1 cut(s)	228
MroXI	GAANNNNTTC	1 cut(s)	355
MscI	TGGCCA	1 cut(s)	18
MseI	TTAA	3 cut(s)	809, 1311, 1559
MslI	CAYNNNNRTG	2 cut(s)	969, 1732
Msp20I	TGGCCA	1 cut(s)	18
MspA1I	CMGCKG	1 cut(s)	1529
MspCI	CTTAAG	1 cut(s)	808
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	4 cut(s)	165, 297, 569, 1103
Mva1269I	GAATGC	1 cut(s)	1042
MvaI	CCWGG	4 cut(s)	165, 297, 569, 1103
MwoI	GCNNNNNNNGC	9 cut(s)	271, 619, 754, 758, 923, 1502, 1523, 1553, 1637
NaeI	GCCGGC	1 cut(s)	230
NcoI	CCATGG	1 cut(s)	633
NdeII	GATC	8 cut(s)	154, 325, 835, 1021, 1270, 1350, 1375, 1826
NgoMIV	GCCGGC	1 cut(s)	228
NlaIII	CATG	7 cut(s)	23, 89, 601, 637, 1004, 1682, 1737
NlaIV	GGNNCC	8 cut(s)	145, 156, 174, 661, 790, 1069, 1377, 1490
NmeAIII	GCCGAG	1 cut(s)	1666
NmuCI	GTSAC	3 cut(s)	571, 971, 1757
NsiI	ATGCAT	5 cut(s)	1006, 1033, 1044, 1111, 1367
NspI	RCATGY	2 cut(s)	1004, 1682
OliI	CACNNNNGTG	1 cut(s)	969
PaeI	GCATGC	1 cut(s)	1004
PaqCI	CACCTGC	1 cut(s)	1150
PciSI	GCTCTTC	1 cut(s)	361
PctI	GAATGC	1 cut(s)	1042
PdiI	GCCGGC	1 cut(s)	230
PdmI	GAANNNNTTC	1 cut(s)	355
PfeI	GAWTC	5 cut(s)	317, 547, 652, 850, 991
PflFI	GACNNNGTC	2 cut(s)	569, 1597
PflMI	CCANNNNNTGG	1 cut(s)	337
PfoI	TCCNGGA	1 cut(s)	1101
PkrI	GCNGC	9 cut(s)	343, 484, 487, 559, 916, 1498, 1525, 1528, 1555
PleI	GAGTC	1 cut(s)	1754
PpsI	GAGTC	1 cut(s)	1754
PpuMI	RGGWCCY	2 cut(s)	143, 1068
Psp124BI	GAGCTC	2 cut(s)	1647, 1727
Psp5II	RGGWCCY	2 cut(s)	143, 1068
Psp6I	CCWGG	4 cut(s)	163, 295, 567, 1101
PspFI	CCCAGC	1 cut(s)	1318
PspGI	CCWGG	4 cut(s)	163, 295, 567, 1101
PspN4I	GGNNCC	8 cut(s)	145, 156, 174, 661, 790, 1069, 1377, 1490
PspPI	GGNCC	4 cut(s)	143, 630, 789, 1068
PspPPI	RGGWCCY	2 cut(s)	143, 1068
PstI	CTGCAG	5 cut(s)	37, 376, 562, 1438, 1528
PstNI	CAGNNNCTG	2 cut(s)	754, 1442
PsuI	RGATCY	3 cut(s)	154, 1270, 1375
PsyI	GACNNNGTC	2 cut(s)	569, 1597
PvuII	CAGCTG	1 cut(s)	1529
RsaI	GTAC	1 cut(s)	1149
RsaNI	GTAC	1 cut(s)	1148
RseI	CAYNNNNRTG	2 cut(s)	969, 1732
SacI	GAGCTC	2 cut(s)	1647, 1727
SapI	GCTCTTC	1 cut(s)	361
SaqAI	TTAA	3 cut(s)	809, 1311, 1559
SatI	GCNGC	9 cut(s)	342, 483, 486, 558, 915, 1497, 1524, 1527, 1554
Sau3AI	GATC	8 cut(s)	154, 325, 835, 1021, 1270, 1350, 1375, 1826
Sau96I	GGNCC	4 cut(s)	143, 630, 789, 1068
SchI	GAGTC	1 cut(s)	1754
ScrFI	CCNGG	4 cut(s)	165, 297, 569, 1103
SduI	GDGCHC	3 cut(s)	175, 1647, 1727
SexAI	ACCWGGT	1 cut(s)	567
SfcI	CTRYAG	5 cut(s)	33, 372, 558, 1434, 1524
SinI	GGWCC	3 cut(s)	143, 789, 1068
SmiMI	CAYNNNNRTG	2 cut(s)	969, 1732
SmlI	CTYRAG	2 cut(s)	808, 1646
SmoI	CTYRAG	2 cut(s)	808, 1646
SphI	GCATGC	1 cut(s)	1004
Sse9I	AATT	6 cut(s)	367, 382, 536, 934, 1047, 1422
SsiI	CCGC	6 cut(s)	152, 482, 721, 914, 1534, 1618
SspMI	CTAG	3 cut(s)	510, 1301, 1332
SstI	GAGCTC	2 cut(s)	1647, 1727
StyD4I	CCNGG	4 cut(s)	163, 295, 567, 1101
StyI	CCWWGG	3 cut(s)	321, 633, 1195
TaiI	ACGT	1 cut(s)	1483
TaqI	TCGA	5 cut(s)	244, 695, 1037, 1576, 1825
TasI	AATT	6 cut(s)	367, 382, 536, 934, 1047, 1422
TauI	GCSGC	2 cut(s)	485, 917
TfiI	GAWTC	5 cut(s)	317, 547, 652, 850, 991
Tru1I	TTAA	3 cut(s)	809, 1311, 1559
Tru9I	TTAA	3 cut(s)	809, 1311, 1559
TseFI	GTSAC	3 cut(s)	571, 971, 1757
TseI	GCWGC	7 cut(s)	341, 485, 557, 1496, 1523, 1526, 1553
Tsp45I	GTSAC	3 cut(s)	571, 971, 1757
TspDTI	ATGAA	5 cut(s)	17, 44, 330, 393, 1069
Tth111I	GACNNNGTC	2 cut(s)	569, 1597
Van91I	CCANNNNNTGG	1 cut(s)	337
Vha464I	CTTAAG	1 cut(s)	808
VpaK11BI	GGWCC	3 cut(s)	143, 789, 1068
XagI	CCTNNNNNAGG	1 cut(s)	138
XapI	RAATTY	2 cut(s)	367, 382
XceI	RCATGY	2 cut(s)	1004, 1682
XmiI	GTMKAC	2 cut(s)	564, 1683
XmnI	GAANNNNTTC	1 cut(s)	355
XspI	CTAG	3 cut(s)	510, 1301, 1332
Zsp2I	ATGCAT	5 cut(s)	1006, 1033, 1044, 1111, 1367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.