pycom07g18870

E3 ubiquitin-protein ligase RING1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
21255096 .. 21255998
903 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g18870.1

Sequence Viewer

Length: 903 bp
ATGTACATGGTTGGAGCCAACAATGGCTCCGGTTCCAATCCGGATCATACCGCTTCCGGTCCTTCGGGACCTCGAAGAGTTCGACGAAACAACGGCGACCGCTCATCGTTCAATCCAGTCATCGTCCTCCGCGGAACAACGGCGGACAACGCCGCCACCATCGAGGAAGGCCGCGGATTCGACCTTTTTTACGACGACGGCAGCGGCTCGGGGCTCCGGCCCTTGCCTGCAAGCATGTCCCAGTTTTTACTCGGGTCCGGGTTCGACCGCCTACTTGAACAGCTGTCGCAGATTGAGATCAATGGAATCGGCGGATGCGAGCAGAGATCGGCGTCGAGATTGGCGATTGATTCGATGCCGACGATCAAACTCGACGACGCTCACATAATGGCGGAGCATCACTGCGCCGTGTGCAAAGAAGCGTTCGAAGTAGGCACGGAAGCTCGGGAAATGCCCTGCAAACATATATACCACTCCGACTGTATACTGCCGTGGCTTGCGCTCCGGAATTCGTGTCCTGTATGCAGACACGAGCTGCCGGCCGATTCGTCGCCCGAGACGGGTCAGCAGGAAGACGAAAACGCGGGTCTTACGATCTGGAGGCTGCCTGGGGGCGGATTCGCGGTGGGGAGATATAGCGGGGGGAGAAGGGGCGCCGAGAGAGAGCTGCCGGTGGTGTATACCGAGATGGACGGCGGGTTTAGCGGTGGCGGAGCTCCGAGGAGGATTTCGTGGTCGAGAAATGGTGGAAGACGGAGACAGAGCGGTGGGTTGAGGAGGTTTTTTATGAATCTGTTTGGTTGTTTTAGCGGGGGTGGGTCGTCGGCAGCGAGTTTGGTTTCGGGTTCGGAAATAAGGTTGGGGCGCCGACGCCCCCTCCGTCGACGAGTCATCAAAGACTGA

Protein Analysis

301

Amino Acids

32.47

Weight (kDa)

8.87

Isoelectric Point (pI)

77.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 133 - 176 1.9e-06 RING-H2 zinc finger domain
zf-RING_2 PF13639 134 - 176 3.9e-12 Ring finger domain
zf-C3HC4_2 PF13923 135 - 175 1.4e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 135 - 162 1.2e-07 RING-like zinc finger
zf-C3HC4 PF00097 135 - 175 1.5e-06 Zinc finger, C3HC4 type (RING finger)
DUF1117 PF06547 196 - 279 5.7e-36 Protein of unknown function (DUF1117)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 653, 864
AccBSI CCGCTC 2 cut(s) 102, 765
AccI GTMKAC 3 cut(s) 484, 680, 883
AccII CGCG 4 cut(s) 132, 174, 584, 623
AccIII TCCGGA 2 cut(s) 40, 504
AclWI GGATC 1 cut(s) 51
AcoI YGGCCR 1 cut(s) 540
AcsI RAATTY 1 cut(s) 508
AcyI GRCGYC 4 cut(s) 332, 654, 865, 871
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 560, 614
AgsI TTSAA 2 cut(s) 112, 278
AjnI CCWGG 1 cut(s) 607
AluBI AGCT 5 cut(s) 283, 443, 535, 667, 716
AluI AGCT 5 cut(s) 283, 443, 535, 667, 716
Alw21I GWGCWC 1 cut(s) 718
Alw26I GTCTC 2 cut(s) 551, 751
AlwI GGATC 1 cut(s) 51
Ama87I CYCGRG 4 cut(s) 208, 251, 444, 554
Aor13HI TCCGGA 2 cut(s) 40, 504
AoxI GGCC 3 cut(s) 169, 218, 540
ApeKI GCWGC 5 cut(s) 201, 535, 604, 667, 827
ApoI RAATTY 1 cut(s) 508
AspLEI GCGC 4 cut(s) 407, 502, 656, 867
AspS9I GGNCC 4 cut(s) 59, 68, 219, 255
AsuC2I CCSGG 1 cut(s) 259
AsuII TTCGAA 1 cut(s) 426
AvaI CYCGRG 4 cut(s) 208, 251, 444, 554
AvaII GGWCC 3 cut(s) 59, 68, 255
BanI GGYRCC 2 cut(s) 653, 864
BanII GRGCYC 2 cut(s) 216, 718
BauI CACGAG 1 cut(s) 530
BbsI GAAGAC 2 cut(s) 579, 757
Bbv12I GWGCWC 1 cut(s) 718
BbvI GCAGC 5 cut(s) 213, 522, 591, 654, 839
BccI CCATC 2 cut(s) 167, 682
BceAI ACGGC 6 cut(s) 109, 156, 214, 392, 475, 709
BciT130I CCWGG 1 cut(s) 609
BcnI CCSGG 1 cut(s) 259
BcoDI GTCTC 2 cut(s) 551, 751
BfoI RGCGCY 2 cut(s) 657, 868
BisI GCNGC 8 cut(s) 153, 172, 202, 205, 536, 605, 668, 828
BlsI GCNGC 8 cut(s) 154, 173, 203, 206, 537, 606, 669, 829
Bme1390I CCNGG 2 cut(s) 259, 609
Bme18I GGWCC 3 cut(s) 59, 68, 255
BmeT110I CYCGRG 4 cut(s) 208, 251, 444, 554
BmgT120I GGNCC 4 cut(s) 59, 68, 219, 255
BmiI GGNNCC 8 cut(s) 16, 28, 34, 69, 215, 256, 655, 866
BmrFI CCNGG 2 cut(s) 259, 609
BmrI ACTGGG 1 cut(s) 235
BmsI GCATC 3 cut(s) 305, 345, 406
BmuI ACTGGG 1 cut(s) 235
BpiI GAAGAC 2 cut(s) 579, 757
BpmI CTGGAG 1 cut(s) 619
Bpu14I TTCGAA 1 cut(s) 426
BpuMI CCSGG 1 cut(s) 259
BsaBI GATNNNNATC 1 cut(s) 296
BsaHI GRCGYC 4 cut(s) 332, 654, 865, 871
BsaJI CCNNGG 5 cut(s) 130, 172, 491, 608, 719
BsaWI WCCGGW 4 cut(s) 29, 40, 56, 504
BsaXI ACNNNNNCTCC 4 cut(s) 11, 41, 861, 891
Bsc4I CCNNNNNNNGG 2 cut(s) 560, 614
Bse118I RCCGGY 2 cut(s) 538, 670
Bse1I ACTGG 2 cut(s) 116, 241
Bse8I GATNNNNATC 1 cut(s) 296
BseAI TCCGGA 2 cut(s) 40, 504
BseBI CCWGG 1 cut(s) 609
BseDI CCNNGG 5 cut(s) 130, 172, 491, 608, 719
BseGI GGATG 1 cut(s) 320
BseJI GATNNNNATC 1 cut(s) 296
BseLI CCNNNNNNNGG 2 cut(s) 560, 614
BseNI ACTGG 2 cut(s) 116, 241
BseRI GAGGAG 2 cut(s) 736, 790
BseX3I CGGCCG 1 cut(s) 540
BseXI GCAGC 5 cut(s) 213, 522, 591, 654, 839
Bsh1236I CGCG 4 cut(s) 132, 174, 584, 623
Bsh1285I CGRYCG 3 cut(s) 100, 268, 543
BshFI GGCC 3 cut(s) 171, 220, 542
BshNI GGYRCC 2 cut(s) 653, 864
BsiEI CGRYCG 3 cut(s) 100, 268, 543
BsiHKAI GWGCWC 1 cut(s) 718
BsiHKCI CYCGRG 4 cut(s) 208, 251, 444, 554
BsiSI CCGG 8 cut(s) 30, 41, 57, 217, 258, 505, 539, 671
BslFI GGGAC 2 cut(s) 81, 223
BslI CCNNNNNNNGG 2 cut(s) 560, 614
BsmAI GTCTC 2 cut(s) 551, 751
BsmBI CGTCTC 1 cut(s) 551
BsmFI GGGAC 2 cut(s) 81, 223
BsnI GGCC 3 cut(s) 171, 220, 542
BsoBI CYCGRG 4 cut(s) 208, 251, 444, 554
Bsp119I TTCGAA 1 cut(s) 426
Bsp1286I GDGCHC 2 cut(s) 216, 718
Bsp13I TCCGGA 2 cut(s) 40, 504
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 5 cut(s) 43, 297, 326, 363, 594
BspANI GGCC 3 cut(s) 171, 220, 542
BspEI TCCGGA 2 cut(s) 40, 504
BspFNI CGCG 4 cut(s) 132, 174, 584, 623
BspLI GGNNCC 8 cut(s) 16, 28, 34, 69, 215, 256, 655, 866
BspPI GGATC 1 cut(s) 51
BspT104I TTCGAA 1 cut(s) 426
BspT107I GGYRCC 2 cut(s) 653, 864
BsrBI CCGCTC 2 cut(s) 102, 765
BsrFI RCCGGY 2 cut(s) 538, 670
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 116, 241
BssAI RCCGGY 2 cut(s) 538, 670
BssECI CCNNGG 5 cut(s) 130, 172, 491, 608, 719
BssMI GATC 5 cut(s) 43, 297, 326, 363, 594
BssNAI GTATAC 2 cut(s) 485, 681
BssNI GRCGYC 4 cut(s) 332, 654, 865, 871
BssSI CACGAG 1 cut(s) 530
Bst1107I GTATAC 2 cut(s) 485, 681
Bst2BI CACGAG 1 cut(s) 530
Bst2UI CCWGG 1 cut(s) 609
Bst4CI ACNGT 1 cut(s) 482
Bst6I CTCTTC 1 cut(s) 70
BstACI GRCGYC 4 cut(s) 332, 654, 865, 871
BstAUI TGTACA 1 cut(s) 3
BstBI TTCGAA 1 cut(s) 426
BstC8I GCNNGC 5 cut(s) 228, 232, 320, 498, 540
BstDSI CCRYGG 3 cut(s) 130, 172, 491
BstF5I GGATG 1 cut(s) 320
BstFNI CGCG 4 cut(s) 132, 174, 584, 623
BstH2I RGCGCY 2 cut(s) 657, 868
BstHHI GCGC 4 cut(s) 407, 502, 656, 867
BstKTI GATC 5 cut(s) 46, 300, 329, 366, 597
BstMAI GTCTC 2 cut(s) 551, 751
BstMBI GATC 5 cut(s) 43, 297, 326, 363, 594
BstMCI CGRYCG 3 cut(s) 100, 268, 543
BstMWI GCNNNNNNNGC 3 cut(s) 149, 411, 702
BstNI CCWGG 1 cut(s) 609
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 2 cut(s) 257, 607
BstUI CGCG 4 cut(s) 132, 174, 584, 623
BstV1I GCAGC 5 cut(s) 213, 522, 591, 654, 839
BstV2I GAAGAC 2 cut(s) 579, 757
BstZ17I GTATAC 2 cut(s) 485, 681
BstZI CGGCCG 1 cut(s) 540
BsuRI GGCC 3 cut(s) 171, 220, 542
BtgI CCRYGG 3 cut(s) 130, 172, 491
BtsCI GGATG 1 cut(s) 320
BtsI GCAGTG 1 cut(s) 400
BtsIMutI CAGTG 1 cut(s) 400
Cac8I GCNNGC 5 cut(s) 228, 232, 320, 498, 540
CfoI GCGC 4 cut(s) 407, 502, 656, 867
Cfr10I RCCGGY 2 cut(s) 538, 670
Cfr13I GGNCC 4 cut(s) 59, 68, 219, 255
Cfr42I CCGCGG 2 cut(s) 133, 175
CseI GACGC 3 cut(s) 321, 386, 879
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 7, 235
CviQI GTAC 1 cut(s) 4
DinI GGCGCC 2 cut(s) 655, 866
DpnI GATC 5 cut(s) 45, 299, 328, 365, 596
DpnII GATC 5 cut(s) 43, 297, 326, 363, 594
EaeI YGGCCR 1 cut(s) 540
EagI CGGCCG 1 cut(s) 540
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
EciI GGCGGA 5 cut(s) 158, 327, 407, 630, 726
Ecl136II GAGCTC 1 cut(s) 716
EclXI CGGCCG 1 cut(s) 540
Eco24I GRGCYC 2 cut(s) 216, 718
Eco47I GGWCC 3 cut(s) 59, 68, 255
Eco52I CGGCCG 1 cut(s) 540
Eco53kI GAGCTC 1 cut(s) 716
Eco88I CYCGRG 4 cut(s) 208, 251, 444, 554
EcoICRI GAGCTC 1 cut(s) 716
EcoO109I RGGNCCY 1 cut(s) 68
EcoRI GAATTC 1 cut(s) 508
EcoRII CCWGG 1 cut(s) 607
EcoT38I GRGCYC 2 cut(s) 216, 718
EgeI GGCGCC 2 cut(s) 655, 866
EheI GGCGCC 2 cut(s) 655, 866
Esp3I CGTCTC 1 cut(s) 551
FaeI CATG 2 cut(s) 10, 238
FaqI GGGAC 2 cut(s) 81, 223
FatI CATG 2 cut(s) 6, 234
FauI CCCGC 4 cut(s) 577, 632, 689, 803
FblI GTMKAC 3 cut(s) 484, 680, 883
Fnu4HI GCNGC 8 cut(s) 153, 172, 202, 205, 536, 605, 668, 828
FokI GGATG 1 cut(s) 327
FriOI GRGCYC 2 cut(s) 216, 718
Fsp4HI GCNGC 8 cut(s) 153, 172, 202, 205, 536, 605, 668, 828
GlaI GCGC 4 cut(s) 406, 501, 655, 866
GluI GCNGC 8 cut(s) 153, 172, 202, 205, 536, 605, 668, 828
GsuI CTGGAG 1 cut(s) 619
HaeII RGCGCY 2 cut(s) 657, 868
HaeIII GGCC 3 cut(s) 171, 220, 542
HapII CCGG 8 cut(s) 30, 41, 57, 217, 258, 505, 539, 671
HgaI GACGC 3 cut(s) 321, 386, 879
HhaI GCGC 4 cut(s) 407, 502, 656, 867
Hin1I GRCGYC 4 cut(s) 332, 654, 865, 871
Hin1II CATG 2 cut(s) 10, 238
Hin6I GCGC 4 cut(s) 405, 500, 654, 865
HinP1I GCGC 4 cut(s) 405, 500, 654, 865
HincII GTYRAC 1 cut(s) 884
HindII GTYRAC 1 cut(s) 884
HinfI GANTC 7 cut(s) 177, 306, 350, 545, 618, 790, 888
HpaII CCGG 8 cut(s) 30, 41, 57, 217, 258, 505, 539, 671
Hpy166II GTNNAC 3 cut(s) 485, 681, 884
Hpy188I TCNGA 3 cut(s) 478, 720, 850
Hpy188III TCNNGA 7 cut(s) 41, 66, 336, 446, 505, 598, 738
Hpy8I GTNNAC 3 cut(s) 485, 681, 884
HpyAV CCTTC 3 cut(s) 72, 161, 642
HpyCH4III ACNGT 1 cut(s) 482
HpyCH4V TGCA 4 cut(s) 230, 414, 459, 525
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 411, 702
Hsp92I GRCGYC 4 cut(s) 332, 654, 865, 871
Hsp92II CATG 2 cut(s) 10, 238
HspAI GCGC 4 cut(s) 405, 500, 654, 865
KasI GGCGCC 2 cut(s) 653, 864
Kpn2I TCCGGA 2 cut(s) 40, 504
KroI GCCGGC 1 cut(s) 538
KroNI GCCGGC 1 cut(s) 540
KspI CCGCGG 2 cut(s) 133, 175
Kzo9I GATC 5 cut(s) 43, 297, 326, 363, 594
LmnI GCTCC 7 cut(s) 14, 32, 219, 394, 507, 713, 721
Lsp1109I GCAGC 5 cut(s) 213, 522, 591, 654, 839
LweI GCATC 3 cut(s) 305, 345, 406
MalI GATC 5 cut(s) 45, 299, 328, 365, 596
MbiI CCGCTC 2 cut(s) 102, 765
MboI GATC 5 cut(s) 43, 297, 326, 363, 594
MboII GAAGA 3 cut(s) 87, 584, 762
MhlI GDGCHC 2 cut(s) 216, 718
MluCI AATT 1 cut(s) 508
Mly113I GGCGCC 2 cut(s) 654, 865
MlyI GAGTC 1 cut(s) 897
MmeI TCCRAC 1 cut(s) 501
MnlI CCTC 9 cut(s) 81, 137, 157, 594, 714, 717, 768, 771, 887
MroI TCCGGA 2 cut(s) 40, 504
MroNI GCCGGC 1 cut(s) 538
MspA1I CMGCKG 4 cut(s) 132, 174, 204, 283
MspI CCGG 8 cut(s) 30, 41, 57, 217, 258, 505, 539, 671
MspR9I CCNGG 2 cut(s) 259, 609
MvaI CCWGG 1 cut(s) 609
MvnI CGCG 4 cut(s) 132, 174, 584, 623
MwoI GCNNNNNNNGC 3 cut(s) 149, 411, 702
NaeI GCCGGC 1 cut(s) 540
NarI GGCGCC 2 cut(s) 654, 865
NciI CCSGG 1 cut(s) 259
NdeII GATC 5 cut(s) 43, 297, 326, 363, 594
NgoMIV GCCGGC 1 cut(s) 538
NlaIII CATG 2 cut(s) 10, 238
NlaIV GGNNCC 8 cut(s) 16, 28, 34, 69, 215, 256, 655, 866
NmeAIII GCCGAG 1 cut(s) 682
NspI RCATGY 1 cut(s) 238
NspV TTCGAA 1 cut(s) 426
PcsI WCGNNNNNNNCGW 6 cut(s) 79, 315, 341, 359, 827, 877
PdiI GCCGGC 1 cut(s) 540
PfeI GAWTC 6 cut(s) 177, 306, 350, 545, 618, 790
PkrI GCNGC 8 cut(s) 154, 173, 203, 206, 537, 606, 669, 829
PleI GAGTC 1 cut(s) 896
PluTI GGCGCC 2 cut(s) 657, 868
PpsI GAGTC 1 cut(s) 896
PpuMI RGGWCCY 1 cut(s) 68
Psp124BI GAGCTC 1 cut(s) 718
Psp5II RGGWCCY 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 607
PspGI CCWGG 1 cut(s) 607
PspN4I GGNNCC 8 cut(s) 16, 28, 34, 69, 215, 256, 655, 866
PspPI GGNCC 4 cut(s) 59, 68, 219, 255
PspPPI RGGWCCY 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 283
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SacI GAGCTC 1 cut(s) 718
SacII CCGCGG 2 cut(s) 133, 175
SalI GTCGAC 1 cut(s) 882
SatI GCNGC 8 cut(s) 153, 172, 202, 205, 536, 605, 668, 828
Sau3AI GATC 5 cut(s) 43, 297, 326, 363, 594
Sau96I GGNCC 4 cut(s) 59, 68, 219, 255
SchI GAGTC 1 cut(s) 897
ScrFI CCNGG 2 cut(s) 259, 609
SduI GDGCHC 2 cut(s) 216, 718
SetI ASST 9 cut(s) 73, 186, 285, 445, 537, 669, 718, 782, 860
SfaNI GCATC 3 cut(s) 305, 345, 406
SfoI GGCGCC 2 cut(s) 655, 866
Sfr303I CCGCGG 2 cut(s) 133, 175
SfuI TTCGAA 1 cut(s) 426
SgrBI CCGCGG 2 cut(s) 133, 175
SgrDI CGTCGACG 1 cut(s) 882
SinI GGWCC 3 cut(s) 59, 68, 255
Sse9I AATT 1 cut(s) 508
SspDI GGCGCC 2 cut(s) 653, 864
SstI GAGCTC 1 cut(s) 718
StyD4I CCNGG 2 cut(s) 257, 607
TaaI ACNGT 1 cut(s) 482
TasI AATT 1 cut(s) 508
TatI WGTACW 1 cut(s) 3
TauI GCSGC 3 cut(s) 155, 174, 207
TfiI GAWTC 6 cut(s) 177, 306, 350, 545, 618, 790
TscAI CASTG 1 cut(s) 407
TseI GCWGC 5 cut(s) 201, 535, 604, 667, 827
TspDTI ATGAA 1 cut(s) 803
TspGWI ACGGA 3 cut(s) 452, 769, 869
TspRI CASTG 1 cut(s) 407
VpaK11BI GGWCC 3 cut(s) 59, 68, 255
XapI RAATTY 1 cut(s) 508
XceI RCATGY 1 cut(s) 238
XmiI GTMKAC 3 cut(s) 484, 680, 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.