Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001214

Physical Location & Seq

Genomic Coordinates Reverse (-)

16566586 .. 16568960

Gene Structure 2375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39720.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGCTTCTGGATCTTACTGGTGCTATAGTTGTAGCCGATTCGTTTGGGTTTCCGATTCAATCTCTTGCCCTGATTGCGACGGTGGTTTCCTCGAACTCATCCAAGAGCCTCTCGATTTCACACCTTCCGATTCCTTCACCACCACCACCACCACTCAACATCGCAGCCCCACTCGCTTCCCTCCTCCTTCTTCTTCTTCCTCCACCCCATCCGCTTCTATGCACGCCGATAACAGTCCCACTCCTACCATCGTTACTCGTACACGAAGCAATCGATCTCCTAATCCAGTTATTGTTCTCCGTGGATCTGCTGCTGCTCCTTCTTCTGATGTTGTTTCCGAAGGTTTAGATCGATCTGCTTTTCAGATGTATTACGATGATGGTACTGATTCTGGTCTTAGACCTTTACCACCGAGTATGACTGAGTTTTTGTTAGGTTCTGGATTTGATCGTTTGTTAGATCAGATTTCTCAGATCGAGCTTAACACCAATCGGAATCTTCGTTCTTGTGAACATCCACCGGCTTCTAAATCGGCCATTGAAGCTTTGCCTCTGATTGAAATCGATCCGACTCATCTCTTATCGGATTCTCAATCTCATTGCGCTGTTTGCAAAGAGAATTTCGTTTTGAAATCATCTGCTCGCGAGATGCCTTGTAATCACATCTATCATCCTGATTGTATTCTTCCTTGGCTTGCGATTCGTAACTCTTGTCCGGTTTGCCGTCATGAGCTACCGGCGGAGGATCTCACCGACGGAACCGGTGCTGCTTTGACTGCTGTTACCGCTACTGCAGAGGAAGAGGAAGACTCAGCTGCGGGGTTAACGATTTGGAGGTTACCAGGTGGAGGATTCGCTGTAGGGAGAATCCCTGGTGGTTGGAGAGGTGGAGATAGAATGATGCCGGTGGTTTACACGGAGGTTGATGGTGGTAGACTCGGTGATGAGAGACTTCCGAGAAGAGTAGCTTGGGGTTCGAGAAGAGGTGGAAGAGATGGTGGAGGTAGTAGAGAGAGAGGTGGTGGCTTTGCGGGTCGGATCATGAGGCTTTTCGGATGTTTTAGTGGATCATCTGGATCCATTGCTGCTGCTGCTGCTGCATCATCCGGGTCCGGGTCCAGAATTCGGGTTACTCGTAGAACCAGGTCGTTCTCTATGTTCAGTACGGCGTCGTCTTCGTCAAGGAGACGAAATTGGCTAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010035 GO:0010154 GO:0010200 GO:0010243 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0097305 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1117 zf-RING_2 zinc_ribbon_9

Protein Analysis

401

Amino Acids

43.11

Weight (kDa)

6.71

Isoelectric Point (pI)

70.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	5 - 34	3.2e-12	zinc-ribbon
zf-rbx1	PF12678	199 - 242	2.6e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	200 - 242	2.2e-11	Ring finger domain
zf-C3HC4_2	PF13923	201 - 241	1.1e-06	Zinc finger, C3HC4 type (RING finger)
DUF1117	PF06547	274 - 388	2.7e-33	Protein of unknown function (DUF1117)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39720 AT2G39720 AT3G46620 AT5G59550 AT5G59550
fragaria_vesca	FvH4_3g36860 FvH4_6g13340 FvH4_7g22850
malus_domestica	MD01G1136700.v1.1 MD03G1087100.v1.1 MD04G1131800.v1.1 MD07G1201700.v1.1 MD10G1074300.v1.1 MD11G1012900.v1.1 MD11G1096200.v1.1 MD12G1144900.v1.1
prunus_persica	Prupe.2G238300_v2.0.a1 Prupe.6G071800_v2.0.a1 Prupe.6G258400_v2.0.a1
pyrus_communis	pycom01g15740 pycom03g06910 pycom04g11990 pycom07g18870 pycom11g08150 pycom12g13930
rosa_chinensis	RchiOBHm_Chr1g0368011 RchiOBHm_Chr3g0466231 RchiOBHm_Chr5g0066071
rosa_laevigata	RLG00000024595 RLG00000027247 RLG00000035839
rosa_multiflora	Rmu_co8242689.1_g000001 Rmu_co8418295.1_g000001 Rmu_sc0000350.1_g000012 Rmu_sc0002406.1_g000005 Rmu_sc0005240.1_g000003 Rmu_sc0005240.1_g000004
rosa_roxburghii	Rroxscaffold_1G00014940 Rroxscaffold_4G00288940 Rroxscaffold_6G00414710
rosa_rugosa	Rorug01G0338400 Rorug03G0080500 Rorug05G0376200
rosa_samantha	Rh1AG345200 Rh1BG307500 Rh1CG323100 Rh1DG339600 Rh3BG147700 Rh3DG148400 Rh5AG434600 Rh5BG450900 Rh5CG473200 Rh5DG464500
rosa_wichuraiana	Rw1G030720 Rw3G011940 Rw5G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	934
AccII	CGCG	1 cut(s)	645
AciI	CCGC	5 cut(s)	213, 740, 786, 818, 1031
AclWI	GGATC	8 cut(s)	19, 313, 560, 753, 1046, 1071, 1075, 1084
AcoI	YGGCCR	1 cut(s)	534
AcsI	RAATTY	2 cut(s)	619, 1122
AcyI	GRCGYC	1 cut(s)	1169
AfaI	GTAC	3 cut(s)	262, 385, 1165
AfiI	CCNNNNNNNGG	3 cut(s)	848, 1113, 1125
AgeI	ACCGGT	1 cut(s)	761
AgsI	TTSAA	4 cut(s)	60, 542, 560, 631
AjnI	CCWGG	3 cut(s)	841, 871, 1142
AjuI	GAANNNNNNNTTGG	2 cut(s)	952, 984
AloI	GAACNNNNNNTCC	2 cut(s)	487, 519
AluBI	AGCT	5 cut(s)	481, 545, 733, 815, 968
AluI	AGCT	5 cut(s)	481, 545, 733, 815, 968
Alw26I	GTCTC	2 cut(s)	943, 1180
AlwI	GGATC	8 cut(s)	19, 313, 560, 753, 1046, 1071, 1075, 1084
AoxI	GGCC	1 cut(s)	534
ApoI	RAATTY	2 cut(s)	619, 1122
ArsI	GACNNNNNNTTYG	2 cut(s)	412, 444
AsiGI	ACCGGT	1 cut(s)	761
AspLEI	GCGC	1 cut(s)	605
AspS9I	GGNCC	2 cut(s)	1110, 1116
AsuC2I	CCSGG	2 cut(s)	1108, 1114
AsuHPI	GGTGA	3 cut(s)	130, 742, 953
AsuNHI	GCTAGC	1 cut(s)	1198
AvaII	GGWCC	2 cut(s)	1110, 1116
BamHI	GGATCC	1 cut(s)	1076
BbsI	GAAGAC	2 cut(s)	813, 1167
BccI	CCATC	5 cut(s)	217, 257, 374, 920, 989
BceAI	ACGGC	2 cut(s)	708, 1182
BciT130I	CCWGG	3 cut(s)	843, 873, 1144
BcnI	CCSGG	2 cut(s)	1108, 1114
BcoDI	GTCTC	2 cut(s)	943, 1180
BfaI	CTAG	1 cut(s)	1199
BfmI	CTRYAG	3 cut(s)	25, 792, 858
Bme1390I	CCNGG	5 cut(s)	843, 873, 1108, 1114, 1144
Bme18I	GGWCC	2 cut(s)	1110, 1116
BmgT120I	GGNCC	2 cut(s)	1110, 1116
BmiI	GGNNCC	4 cut(s)	760, 1078, 1111, 1117
BmrFI	CCNGG	5 cut(s)	843, 873, 1108, 1114, 1144
BmsI	GCATC	3 cut(s)	639, 891, 1109
BmtI	GCTAGC	1 cut(s)	1202
BpiI	GAAGAC	2 cut(s)	813, 1167
BplI	GAGNNNNNCTC	2 cut(s)	794, 826
BpuMI	CCSGG	2 cut(s)	1108, 1114
Bsa29I	ATCGAT	3 cut(s)	274, 352, 564
BsaBI	GATNNNNATC	1 cut(s)	560
BsaHI	GRCGYC	1 cut(s)	1169
BsaJI	CCNNGG	3 cut(s)	301, 689, 871
BsaWI	WCCGGW	2 cut(s)	715, 761
Bsc4I	CCNNNNNNNGG	3 cut(s)	848, 1113, 1125
Bse118I	RCCGGY	4 cut(s)	520, 736, 761, 904
Bse1I	ACTGG	2 cut(s)	23, 287
Bse3DI	GCAATG	2 cut(s)	598, 1080
Bse8I	GATNNNNATC	1 cut(s)	560
BseBI	CCWGG	3 cut(s)	843, 873, 1144
BseCI	ATCGAT	3 cut(s)	274, 352, 564
BseDI	CCNNGG	3 cut(s)	301, 689, 871
BseGI	GGATG	6 cut(s)	99, 209, 514, 670, 1061, 1103
BseJI	GATNNNNATC	1 cut(s)	560
BseLI	CCNNNNNNNGG	3 cut(s)	848, 1113, 1125
BseMI	GCAATG	2 cut(s)	598, 1080
BseMII	CTCAG	3 cut(s)	414, 485, 825
BseNI	ACTGG	2 cut(s)	23, 287
BseRI	GAGGAG	1 cut(s)	174
Bsh1236I	CGCG	1 cut(s)	645
BshFI	GGCC	1 cut(s)	536
BshTI	ACCGGT	1 cut(s)	761
BshVI	ATCGAT	3 cut(s)	274, 352, 564
BsiSI	CCGG	7 cut(s)	521, 716, 737, 762, 905, 1107, 1113
BslFI	GGGAC	1 cut(s)	222
BslI	CCNNNNNNNGG	3 cut(s)	848, 1113, 1125
BsmAI	GTCTC	2 cut(s)	943, 1180
BsmBI	CGTCTC	1 cut(s)	1180
BsmFI	GGGAC	1 cut(s)	222
BsnI	GGCC	1 cut(s)	536
Bsp68I	TCGCGA	1 cut(s)	645
BspACI	CCGC	5 cut(s)	213, 740, 786, 818, 1031
BspANI	GGCC	1 cut(s)	536
BspCNI	CTCAG	3 cut(s)	415, 484, 824
BspDI	ATCGAT	3 cut(s)	274, 352, 564
BspFNI	CGCG	1 cut(s)	645
BspHI	TCATGA	2 cut(s)	727, 1041
BspLI	GGNNCC	4 cut(s)	760, 1078, 1111, 1117
BspMAI	CTGCAG	1 cut(s)	796
BspOI	GCTAGC	1 cut(s)	1202
BspPI	GGATC	8 cut(s)	19, 313, 560, 753, 1046, 1071, 1075, 1084
BsrDI	GCAATG	2 cut(s)	598, 1080
BsrFI	RCCGGY	4 cut(s)	520, 736, 761, 904
BsrI	ACTGG	2 cut(s)	23, 287
BssAI	RCCGGY	4 cut(s)	520, 736, 761, 904
BssECI	CCNNGG	3 cut(s)	301, 689, 871
BssNI	GRCGYC	1 cut(s)	1169
BssT1I	CCWWGG	1 cut(s)	689
Bst2UI	CCWGG	3 cut(s)	843, 873, 1144
Bst4CI	ACNGT	2 cut(s)	83, 236
Bst6I	CTCTTC	4 cut(s)	795, 955, 976, 985
BstACI	GRCGYC	1 cut(s)	1169
BstC8I	GCNNGC	4 cut(s)	225, 643, 696, 1200
BstDEI	CTNAG	4 cut(s)	398, 423, 471, 811
BstDSI	CCRYGG	1 cut(s)	301
BstEII	GGTNACC	1 cut(s)	837
BstF5I	GGATG	6 cut(s)	99, 209, 514, 670, 1061, 1103
BstFNI	CGCG	1 cut(s)	645
BstHHI	GCGC	1 cut(s)	605
BstMAI	GTCTC	2 cut(s)	943, 1180
BstMWI	GCNNNNNNNGC	9 cut(s)	75, 174, 542, 609, 776, 785, 1091, 1094, 1097
BstNI	CCWGG	3 cut(s)	843, 873, 1144
BstPI	GGTNACC	1 cut(s)	837
BstSCI	CCNGG	5 cut(s)	841, 871, 1106, 1112, 1142
BstSFI	CTRYAG	3 cut(s)	25, 792, 858
BstUI	CGCG	1 cut(s)	645
BstV2I	GAAGAC	2 cut(s)	813, 1167
BstX2I	RGATCY	4 cut(s)	11, 305, 745, 1076
BstYI	RGATCY	4 cut(s)	11, 305, 745, 1076
Bsu15I	ATCGAT	3 cut(s)	274, 352, 564
BsuRI	GGCC	1 cut(s)	536
BsuTUI	ATCGAT	3 cut(s)	274, 352, 564
BtgI	CCRYGG	1 cut(s)	301
BtgZI	GCGATG	1 cut(s)	146
BtsCI	GGATG	6 cut(s)	99, 209, 514, 670, 1061, 1103
BtuMI	TCGCGA	1 cut(s)	645
Cac8I	GCNNGC	4 cut(s)	225, 643, 696, 1200
CciI	TCATGA	2 cut(s)	727, 1041
CfoI	GCGC	1 cut(s)	605
Cfr10I	RCCGGY	4 cut(s)	520, 736, 761, 904
Cfr13I	GGNCC	2 cut(s)	1110, 1116
ClaI	ATCGAT	3 cut(s)	274, 352, 564
CseI	GACGC	1 cut(s)	1158
CsiI	ACCWGGT	2 cut(s)	841, 1142
Csp6I	GTAC	3 cut(s)	261, 384, 1164
CspAI	ACCGGT	1 cut(s)	761
CviAII	CATG	2 cut(s)	728, 1042
CviQI	GTAC	3 cut(s)	261, 384, 1164
DdeI	CTNAG	4 cut(s)	398, 423, 471, 811
EaeI	YGGCCR	1 cut(s)	534
Eam1104I	CTCTTC	4 cut(s)	795, 955, 976, 985
EarI	CTCTTC	4 cut(s)	795, 955, 976, 985
EciI	GGCGGA	1 cut(s)	755
Eco130I	CCWWGG	1 cut(s)	689
Eco47I	GGWCC	2 cut(s)	1110, 1116
Eco91I	GGTNACC	1 cut(s)	837
EcoO65I	GGTNACC	1 cut(s)	837
EcoRI	GAATTC	1 cut(s)	1122
EcoRII	CCWGG	3 cut(s)	841, 871, 1142
EcoT14I	CCWWGG	1 cut(s)	689
ErhI	CCWWGG	1 cut(s)	689
Esp3I	CGTCTC	1 cut(s)	1180
FaeI	CATG	2 cut(s)	731, 1045
FaiI	YATR	6 cut(s)	27, 221, 419, 729, 1043, 1157
FalI	AAGNNNNNCTT	2 cut(s)	952, 984
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	2 cut(s)	727, 1041
FauI	CCCGC	2 cut(s)	811, 1024
FblI	GTMKAC	1 cut(s)	934
FokI	GGATG	6 cut(s)	86, 196, 501, 657, 1068, 1090
FspBI	CTAG	1 cut(s)	1199
GlaI	GCGC	1 cut(s)	604
HaeIII	GGCC	1 cut(s)	536
HapII	CCGG	7 cut(s)	521, 716, 737, 762, 905, 1107, 1113
HgaI	GACGC	1 cut(s)	1158
HhaI	GCGC	1 cut(s)	605
Hin1I	GRCGYC	1 cut(s)	1169
Hin1II	CATG	2 cut(s)	731, 1045
Hin6I	GCGC	1 cut(s)	603
HinP1I	GCGC	1 cut(s)	603
HincII	GTYRAC	1 cut(s)	825
HindII	GTYRAC	1 cut(s)	825
HindIII	AAGCTT	1 cut(s)	543
HpaI	GTTAAC	1 cut(s)	825
HpaII	CCGG	7 cut(s)	521, 716, 737, 762, 905, 1107, 1113
HphI	GGTGA	3 cut(s)	130, 742, 953
Hpy166II	GTNNAC	5 cut(s)	263, 512, 825, 913, 935
Hpy8I	GTNNAC	5 cut(s)	263, 512, 825, 913, 935
Hpy99I	CGWCG	3 cut(s)	83, 758, 1174
HpyAV	CCTTC	5 cut(s)	135, 145, 198, 330, 335
HpyCH4III	ACNGT	2 cut(s)	83, 236
HpyCH4V	TGCA	4 cut(s)	223, 612, 794, 1100
HpyF10VI	GCNNNNNNNGC	9 cut(s)	75, 174, 542, 609, 776, 785, 1091, 1094, 1097
HpyF3I	CTNAG	4 cut(s)	398, 423, 471, 811
Hsp92I	GRCGYC	1 cut(s)	1169
Hsp92II	CATG	2 cut(s)	731, 1045
HspAI	GCGC	1 cut(s)	603
KspAI	GTTAAC	1 cut(s)	825
LmnI	GCTCC	1 cut(s)	322
LweI	GCATC	3 cut(s)	639, 891, 1109
MabI	ACCWGGT	2 cut(s)	841, 1142
MaeI	CTAG	1 cut(s)	1199
MaeIII	GTNAC	5 cut(s)	253, 704, 781, 837, 1129
MflI	RGATCY	4 cut(s)	11, 305, 745, 1076
MluCI	AATT	3 cut(s)	619, 1122, 1192
MlyI	GAGTC	3 cut(s)	565, 803, 930
MmeI	TCCRAC	3 cut(s)	593, 860, 1016
MseI	TTAA	2 cut(s)	483, 824
MspA1I	CMGCKG	1 cut(s)	815
MspI	CCGG	7 cut(s)	521, 716, 737, 762, 905, 1107, 1113
MspR9I	CCNGG	5 cut(s)	843, 873, 1108, 1114, 1144
MvaI	CCWGG	3 cut(s)	843, 873, 1144
MvnI	CGCG	1 cut(s)	645
MwoI	GCNNNNNNNGC	9 cut(s)	75, 174, 542, 609, 776, 785, 1091, 1094, 1097
NciI	CCSGG	2 cut(s)	1108, 1114
NheI	GCTAGC	1 cut(s)	1198
NlaIII	CATG	2 cut(s)	731, 1045
NlaIV	GGNNCC	4 cut(s)	760, 1078, 1111, 1117
NruI	TCGCGA	1 cut(s)	645
PagI	TCATGA	2 cut(s)	727, 1041
PcsI	WCGNNNNNNNCGW	3 cut(s)	271, 499, 1132
PfeI	GAWTC	9 cut(s)	39, 56, 131, 389, 496, 587, 700, 852, 867
PinAI	ACCGGT	1 cut(s)	761
PleI	GAGTC	3 cut(s)	565, 803, 930
PpsI	GAGTC	3 cut(s)	565, 803, 930
Psp6I	CCWGG	3 cut(s)	841, 871, 1142
PspEI	GGTNACC	1 cut(s)	837
PspGI	CCWGG	3 cut(s)	841, 871, 1142
PspN4I	GGNNCC	4 cut(s)	760, 1078, 1111, 1117
PspPI	GGNCC	2 cut(s)	1110, 1116
PstI	CTGCAG	1 cut(s)	796
PsuI	RGATCY	4 cut(s)	11, 305, 745, 1076
PvuII	CAGCTG	1 cut(s)	815
RruI	TCGCGA	1 cut(s)	645
RsaI	GTAC	3 cut(s)	262, 385, 1165
RsaNI	GTAC	3 cut(s)	261, 384, 1164
SaqAI	TTAA	2 cut(s)	483, 824
Sau96I	GGNCC	2 cut(s)	1110, 1116
SchI	GAGTC	3 cut(s)	565, 803, 930
ScrFI	CCNGG	5 cut(s)	843, 873, 1108, 1114, 1144
SexAI	ACCWGGT	2 cut(s)	841, 1142
SfaNI	GCATC	3 cut(s)	639, 891, 1109
SfcI	CTRYAG	3 cut(s)	25, 792, 858
SinI	GGWCC	2 cut(s)	1110, 1116
Sse9I	AATT	3 cut(s)	619, 1122, 1192
SsiI	CCGC	5 cut(s)	213, 740, 786, 818, 1031
SspMI	CTAG	1 cut(s)	1199
StyD4I	CCNGG	5 cut(s)	841, 871, 1106, 1112, 1142
StyI	CCWWGG	1 cut(s)	689
TaaI	ACNGT	2 cut(s)	83, 236
TaqI	TCGA	7 cut(s)	93, 114, 274, 352, 477, 564, 977
TasI	AATT	3 cut(s)	619, 1122, 1192
TfiI	GAWTC	9 cut(s)	39, 56, 131, 389, 496, 587, 700, 852, 867
Tru1I	TTAA	2 cut(s)	483, 824
Tru9I	TTAA	2 cut(s)	483, 824
TspGWI	ACGGA	3 cut(s)	290, 771, 932
VpaK11BI	GGWCC	2 cut(s)	1110, 1116
XapI	RAATTY	2 cut(s)	619, 1122
XmiI	GTMKAC	1 cut(s)	934
XspI	CTAG	1 cut(s)	1199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.