Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001214

Physical Location & Seq

Genomic Coordinates Forward (+)

18529193 .. 18529774

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00014940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCCGGTGATTAAAATCAACGAGTCCCACGTCAGGTCGGAGTCGCACTGCGCGGTCTGCAAAGAAGCTTTCGAATTCGAGTCGGAGGCCCGGGAAATGCCTTGCAACCACATATACCATTCGGATTGCATCCTCCCATGGCTCTCGATGCGAAACTCGTGCCCTGTCTGCCGGCACGAGCTGCCCGTTGACCGAAATTCGGATTCGGGTCACGACGAGGAGACCACCGGGTTGACTATCTGGAGATTACCCGGAGGCGGGTTCGCCGTGGGTCGGTTTTCGGGCGTGAGAAGACCCGGGGAGCGCGAATTGCCGGTTGTGTACACTGAAATGGACGGCGGATTTAACGGAAACGGGGCTCCGAGAAGGGTATTATGGCAATCGAGGAATAGAGGAAGAGAGAGCCGCGGGATTGGCTGGGCTTTCCGTAATTTGGCGTCGTTCTTGGGGAGGTTTAGGTCAAATTCGTCTTCGAGGACCGGGTCGGAAACCGGGTCCGGGGCACTTAGTCGCAGTCGGAGCCAGTCAAGGTTCGGTCGGTACGCGCAGCGCCGGAGCCGGGCTTGGGTCTTGGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010035 GO:0010154 GO:0010200 GO:0010243 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0097305 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1117 zf-RING_2 zinc_ribbon_9

Protein Analysis

193

Amino Acids

21.79

Weight (kDa)

9.53

Isoelectric Point (pI)

73.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	14 - 58	1.4e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	16 - 58	6.2e-13	Ring finger domain
zf-C3HC4_2	PF13923	17 - 57	5.3e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	17 - 57	4.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	17 - 55	2.4e-06	RING-type zinc-finger
zf-RING_11	PF17123	17 - 44	3.5e-06	RING-like zinc finger
DUF1117	PF06547	77 - 178	1.3e-35	Protein of unknown function (DUF1117)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39720 AT2G39720 AT3G46620 AT5G59550 AT5G59550
fragaria_vesca	FvH4_3g36860 FvH4_6g13340 FvH4_7g22850
malus_domestica	MD01G1136700.v1.1 MD03G1087100.v1.1 MD04G1131800.v1.1 MD07G1201700.v1.1 MD10G1074300.v1.1 MD11G1012900.v1.1 MD11G1096200.v1.1 MD12G1144900.v1.1
prunus_persica	Prupe.2G238300_v2.0.a1 Prupe.6G071800_v2.0.a1 Prupe.6G258400_v2.0.a1
pyrus_communis	pycom01g15740 pycom03g06910 pycom04g11990 pycom07g18870 pycom11g08150 pycom12g13930
rosa_chinensis	RchiOBHm_Chr1g0368011 RchiOBHm_Chr3g0466231 RchiOBHm_Chr5g0066071
rosa_laevigata	RLG00000024595 RLG00000027247 RLG00000035839
rosa_multiflora	Rmu_co8242689.1_g000001 Rmu_co8418295.1_g000001 Rmu_sc0000350.1_g000012 Rmu_sc0002406.1_g000005 Rmu_sc0005240.1_g000003 Rmu_sc0005240.1_g000004
rosa_roxburghii	Rroxscaffold_1G00014940 Rroxscaffold_4G00288940 Rroxscaffold_6G00414710
rosa_rugosa	Rorug01G0338400 Rorug03G0080500 Rorug05G0376200
rosa_samantha	Rh1AG345200 Rh1BG307500 Rh1CG323100 Rh1DG339600 Rh3BG147700 Rh3DG148400 Rh5AG434600 Rh5BG450900 Rh5CG473200 Rh5DG464500
rosa_wichuraiana	Rw1G030720 Rw3G011940 Rw5G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	53, 306, 408, 545
AciI	CCGC	5 cut(s)	53, 258, 339, 406, 408
AcsI	RAATTY	3 cut(s)	74, 196, 463
AcyI	GRCGYC	1 cut(s)	437
AfaI	GTAC	2 cut(s)	323, 542
AfiI	CCNNNNNNNGG	9 cut(s)	33, 199, 257, 258, 273, 433, 498, 559, 565
AjiI	CACGTC	1 cut(s)	31
AluBI	AGCT	2 cut(s)	68, 181
AluI	AGCT	2 cut(s)	68, 181
Alw26I	GTCTC	1 cut(s)	215
Ama87I	CYCGRG	2 cut(s)	90, 296
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	2 cut(s)	181, 547
ApoI	RAATTY	3 cut(s)	74, 196, 463
AspLEI	GCGC	4 cut(s)	53, 306, 547, 552
AspS9I	GGNCC	3 cut(s)	88, 477, 495
AsuHPI	GGTGA	1 cut(s)	19
AsuII	TTCGAA	1 cut(s)	72
AvaI	CYCGRG	2 cut(s)	90, 296
AvaII	GGWCC	2 cut(s)	477, 495
BaeGI	GKGCMC	2 cut(s)	164, 505
BanII	GRGCYC	1 cut(s)	361
BauI	CACGAG	2 cut(s)	157, 176
BbsI	GAAGAC	2 cut(s)	298, 462
BbvI	GCAGC	2 cut(s)	168, 559
BceAI	ACGGC	2 cut(s)	251, 352
BcgI	CGANNNNNNTGC	2 cut(s)	141, 175
BcoDI	GTCTC	1 cut(s)	215
BfoI	RGCGCY	1 cut(s)	553
BisI	GCNGC	3 cut(s)	182, 406, 548
BlsI	GCNGC	3 cut(s)	183, 407, 549
Bme18I	GGWCC	2 cut(s)	477, 495
BmeT110I	CYCGRG	2 cut(s)	90, 296
BmgBI	CACGTC	1 cut(s)	31
BmgT120I	GGNCC	3 cut(s)	88, 477, 495
BmiI	GGNNCC	4 cut(s)	360, 496, 521, 557
BmsI	GCATC	2 cut(s)	138, 138
BpiI	GAAGAC	2 cut(s)	298, 462
BpmI	CTGGAG	1 cut(s)	262
Bpu14I	TTCGAA	1 cut(s)	72
BsaBI	GATNNNNATC	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	437
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	7 cut(s)	90, 137, 267, 296, 297, 406, 498
Bsc4I	CCNNNNNNNGG	9 cut(s)	33, 199, 257, 258, 273, 433, 498, 559, 565
Bse118I	RCCGGY	3 cut(s)	4, 171, 313
Bse1I	ACTGG	1 cut(s)	523
Bse8I	GATNNNNATC	1 cut(s)	14
BseDI	CCNNGG	7 cut(s)	90, 137, 267, 296, 297, 406, 498
BseGI	GGATG	2 cut(s)	129, 580
BseJI	GATNNNNATC	1 cut(s)	14
BseLI	CCNNNNNNNGG	9 cut(s)	33, 199, 257, 258, 273, 433, 498, 559, 565
BseNI	ACTGG	1 cut(s)	523
BseRI	GAGGAG	1 cut(s)	233
BseSI	GKGCMC	2 cut(s)	164, 505
BseXI	GCAGC	2 cut(s)	168, 559
BseYI	CCCAGC	1 cut(s)	417
Bsh1236I	CGCG	4 cut(s)	53, 306, 408, 545
Bsh1285I	CGRYCG	1 cut(s)	538
BshFI	GGCC	1 cut(s)	89
BsiEI	CGRYCG	1 cut(s)	538
BsiHKCI	CYCGRG	2 cut(s)	90, 296
BslFI	GGGAC	1 cut(s)	10
BslI	CCNNNNNNNGG	9 cut(s)	33, 199, 257, 258, 273, 433, 498, 559, 565
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	89
Bso31I	GGTCTC	1 cut(s)	215
BsoBI	CYCGRG	2 cut(s)	90, 296
Bsp119I	TTCGAA	1 cut(s)	72
Bsp1286I	GDGCHC	3 cut(s)	164, 361, 505
Bsp1407I	TGTACA	1 cut(s)	321
Bsp19I	CCATGG	1 cut(s)	137
BspACI	CCGC	5 cut(s)	53, 258, 339, 406, 408
BspANI	GGCC	1 cut(s)	89
BspFNI	CGCG	4 cut(s)	53, 306, 408, 545
BspLI	GGNNCC	4 cut(s)	360, 496, 521, 557
BspT104I	TTCGAA	1 cut(s)	72
BspTNI	GGTCTC	1 cut(s)	215
BsrFI	RCCGGY	3 cut(s)	4, 171, 313
BsrGI	TGTACA	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	523
BssAI	RCCGGY	3 cut(s)	4, 171, 313
BssECI	CCNNGG	7 cut(s)	90, 137, 267, 296, 297, 406, 498
BssNI	GRCGYC	1 cut(s)	437
BssSI	CACGAG	2 cut(s)	157, 176
BssT1I	CCWWGG	1 cut(s)	137
Bst2BI	CACGAG	2 cut(s)	157, 176
Bst6I	CTCTTC	1 cut(s)	391
BstACI	GRCGYC	1 cut(s)	437
BstAPI	GCANNNNNTGC	1 cut(s)	181
BstAUI	TGTACA	1 cut(s)	321
BstBI	TTCGAA	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	173
BstDEI	CTNAG	1 cut(s)	506
BstDSI	CCRYGG	3 cut(s)	137, 267, 406
BstF5I	GGATG	2 cut(s)	129, 580
BstFNI	CGCG	4 cut(s)	53, 306, 408, 545
BstH2I	RGCGCY	1 cut(s)	553
BstHHI	GCGC	4 cut(s)	53, 306, 547, 552
BstMAI	GTCTC	1 cut(s)	215
BstMCI	CGRYCG	1 cut(s)	538
BstMWI	GCNNNNNNNGC	7 cut(s)	57, 148, 168, 181, 310, 414, 519
BstSLI	GKGCMC	2 cut(s)	164, 505
BstUI	CGCG	4 cut(s)	53, 306, 408, 545
BstV1I	GCAGC	2 cut(s)	168, 559
BstV2I	GAAGAC	2 cut(s)	298, 462
BsuRI	GGCC	1 cut(s)	89
BtgI	CCRYGG	3 cut(s)	137, 267, 406
BtrI	CACGTC	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	129, 580
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	2 cut(s)	46, 324
Cac8I	GCNNGC	1 cut(s)	173
CfoI	GCGC	4 cut(s)	53, 306, 547, 552
Cfr10I	RCCGGY	3 cut(s)	4, 171, 313
Cfr13I	GGNCC	3 cut(s)	88, 477, 495
Cfr42I	CCGCGG	1 cut(s)	409
Cfr9I	CCCGGG	2 cut(s)	90, 296
CseI	GACGC	1 cut(s)	426
Csp6I	GTAC	2 cut(s)	322, 541
CviAII	CATG	1 cut(s)	138
CviQI	GTAC	2 cut(s)	322, 541
DdeI	CTNAG	1 cut(s)	506
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
EciI	GGCGGA	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	361
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	2 cut(s)	477, 495
Eco88I	CYCGRG	2 cut(s)	90, 296
EcoRI	GAATTC	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	137
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	1 cut(s)	141
FaiI	YATR	4 cut(s)	113, 115, 139, 376
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	1 cut(s)	137
FauI	CCCGC	2 cut(s)	251, 401
Fnu4HI	GCNGC	3 cut(s)	182, 406, 548
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	3 cut(s)	182, 406, 548
GlaI	GCGC	4 cut(s)	52, 305, 546, 551
GluI	GCNGC	3 cut(s)	182, 406, 548
GsaI	CCCAGC	1 cut(s)	421
GsuI	CTGGAG	1 cut(s)	262
HaeII	RGCGCY	1 cut(s)	553
HaeIII	GGCC	1 cut(s)	89
HgaI	GACGC	1 cut(s)	426
HhaI	GCGC	4 cut(s)	53, 306, 547, 552
Hin1I	GRCGYC	1 cut(s)	437
Hin1II	CATG	1 cut(s)	141
Hin6I	GCGC	4 cut(s)	51, 304, 545, 550
HinP1I	GCGC	4 cut(s)	51, 304, 545, 550
HincII	GTYRAC	2 cut(s)	190, 234
HindII	GTYRAC	2 cut(s)	190, 234
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	4 cut(s)	23, 41, 80, 203
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	4 cut(s)	190, 234, 322, 324
Hpy188I	TCNGA	7 cut(s)	40, 85, 124, 202, 363, 487, 519
Hpy188III	TCNNGA	3 cut(s)	145, 212, 241
Hpy8I	GTNNAC	4 cut(s)	190, 234, 322, 324
Hpy99I	CGWCG	2 cut(s)	218, 442
HpyAV	CCTTC	1 cut(s)	360
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	3 cut(s)	60, 105, 129
HpyF10VI	GCNNNNNNNGC	7 cut(s)	57, 148, 168, 181, 310, 414, 519
HpyF3I	CTNAG	1 cut(s)	506
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	1 cut(s)	437
Hsp92II	CATG	1 cut(s)	141
HspAI	GCGC	4 cut(s)	51, 304, 545, 550
KroI	GCCGGC	1 cut(s)	171
KroNI	GCCGGC	1 cut(s)	173
KspI	CCGCGG	1 cut(s)	409
LmnI	GCTCC	4 cut(s)	301, 364, 519, 555
Lsp1109I	GCAGC	2 cut(s)	168, 559
LweI	GCATC	2 cut(s)	138, 138
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	209
MboII	GAAGA	3 cut(s)	303, 408, 462
MhlI	GDGCHC	3 cut(s)	164, 361, 505
MluCI	AATT	5 cut(s)	74, 196, 308, 430, 463
MlyI	GAGTC	3 cut(s)	32, 50, 89
MmeI	TCCRAC	4 cut(s)	18, 63, 465, 497
MnlI	CCTC	8 cut(s)	79, 143, 211, 248, 378, 386, 444, 468
MroNI	GCCGGC	1 cut(s)	171
MseI	TTAA	2 cut(s)	12, 345
MslI	CAYNNNNRTG	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	408
MteI	GCGCNGCGC	1 cut(s)	548
MvnI	CGCG	4 cut(s)	53, 306, 408, 545
MwoI	GCNNNNNNNGC	7 cut(s)	57, 148, 168, 181, 310, 414, 519
NaeI	GCCGGC	1 cut(s)	173
NcoI	CCATGG	1 cut(s)	137
NgoMIV	GCCGGC	1 cut(s)	171
NlaIII	CATG	1 cut(s)	141
NlaIV	GGNNCC	4 cut(s)	360, 496, 521, 557
NmuCI	GTSAC	1 cut(s)	209
NspV	TTCGAA	1 cut(s)	72
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 183
PdiI	GCCGGC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	203
PflFI	GACNNNGTC	1 cut(s)	481
PkrI	GCNGC	3 cut(s)	183, 407, 549
PleI	GAGTC	3 cut(s)	31, 49, 88
PpsI	GAGTC	3 cut(s)	31, 49, 88
PspFI	CCCAGC	1 cut(s)	417
PspN4I	GGNNCC	4 cut(s)	360, 496, 521, 557
PspPI	GGNCC	3 cut(s)	88, 477, 495
PsyI	GACNNNGTC	1 cut(s)	481
RsaI	GTAC	2 cut(s)	323, 542
RsaNI	GTAC	2 cut(s)	322, 541
RseI	CAYNNNNRTG	1 cut(s)	329
SacII	CCGCGG	1 cut(s)	409
SaqAI	TTAA	2 cut(s)	12, 345
SatI	GCNGC	3 cut(s)	182, 406, 548
Sau96I	GGNCC	3 cut(s)	88, 477, 495
SchI	GAGTC	3 cut(s)	32, 50, 89
SduI	GDGCHC	3 cut(s)	164, 361, 505
SetI	ASST	7 cut(s)	33, 38, 70, 183, 455, 461, 533
SfaNI	GCATC	2 cut(s)	138, 138
Sfr303I	CCGCGG	1 cut(s)	409
SfuI	TTCGAA	1 cut(s)	72
SgrBI	CCGCGG	1 cut(s)	409
SinI	GGWCC	2 cut(s)	477, 495
SmaI	CCCGGG	2 cut(s)	92, 298
SmiMI	CAYNNNNRTG	1 cut(s)	329
Sse9I	AATT	5 cut(s)	74, 196, 308, 430, 463
SsiI	CCGC	5 cut(s)	53, 258, 339, 406, 408
StyI	CCWWGG	1 cut(s)	137
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	5 cut(s)	72, 78, 146, 383, 473
TaqII	GACCGA	2 cut(s)	207, 524
TasI	AATT	5 cut(s)	74, 196, 308, 430, 463
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	1 cut(s)	408
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	2 cut(s)	12, 345
Tru9I	TTAA	2 cut(s)	12, 345
TscAI	CASTG	2 cut(s)	53, 331
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	2 cut(s)	181, 547
Tsp45I	GTSAC	1 cut(s)	209
TspGWI	ACGGA	2 cut(s)	363, 416
TspMI	CCCGGG	2 cut(s)	90, 296
TspRI	CASTG	2 cut(s)	53, 331
Tth111I	GACNNNGTC	1 cut(s)	481
VpaK11BI	GGWCC	2 cut(s)	477, 495
XapI	RAATTY	3 cut(s)	74, 196, 463
XmaI	CCCGGG	2 cut(s)	90, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.