Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001214

Physical Location & Seq

Genomic Coordinates Forward (+)

9593836 .. 9595680

Gene Structure 1845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00288940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGTCCGCAGCGACGACGTCATGTTACTGCTACAGATGTAGCAGGTTCATTAGGGCTTTCACCGGCACCGGCGACTCACCGGTGGTGTGTCCGGACTGCGGCAGTGGGTTTGTGGAAGAGCTCGGCAACCCGGCCCGCTCCGTCCACGTGGATTTGCGCCGTTCCGCTGCTGCGATGTACATGATCGGAGCCAACAACCGCTTCGGTTCCAATCATGATCTCCGACGACCTCGCAGAAACAACAACGGCGGTGGCGGTGACCGATCGGTGTTCAATCCGGTCATCGTGGTGCGCGGAACTGAGGAGGGGAATGAGGGAAGAGGATTCGAGCTGTTTTATGACGATGGATCCGGGTCGGGTCTTCGGCCTTTGCCGAGTAACATGTCCGAGTTTTTACTCGGGTCCGGGTTCGACCGCCTGTTGAGTCAGCTTTCGCAGATCGATTTGAACGGAATCGGACGGAACGATCAGCGGCCGGCAGCGAAGTCGGCGGTGGAGTCGTTGCCGACGATCGAGCTCGACGATTCGCACGTGGCGGAGGAGTTCCACTGCGCCGTGTGCAAAGAGCAATTTGAATTGGGAAATGAAGTTCGGGAGATGCCTTGCAAGCATATGTACCACTCCGATTGCATCCTGCCGTGGCTTGCGCAGCGGAATTCGTGTCCGGTGTGCCGGCAAGAGCTGCCGGTGGACTCTCCGGCGGCGGCTCTGAGTGAGGGCGAGAACGCCGCGCTGACGATCTGGAGGCTTCCGGGAGGCGGATTCGCGGTGGGGAGGTTTGGCGCCGGCGGGAGAAGAGCCGGCGGAGGCGATAGGGAGCTTCCGGTGGTTTATACGGAGATGGACGGCGGGTTTAACGGCGGCGCGCCGAGGAGGGTTTCGTGGTCGAGGAGCGGCGGGAGAGGAAGACGCAGAGGTGGAGTCAGGCGGTTTGTTAGAGGCTTGTTCTCGTGTTTCAGCGGTGGCAGGCAAGTTGCGCCTCGGTCGTCTTCTCCTCCGAGTTCCTGGCCGGAAGTGAGGCCTGCGCCGATGAACGACAGGAGGGTGAGGCCATCCAATTCGGAGAGGCCAGCTTCCACGGCCCGGACGCACAGGACTTGGTCTATGGAGGTTAACAATGGGGTTGTGATATGCTCCATTAAACCGCATGTAGATAGTGACAGAGAGATATCGACAAATTTAAAGTACAGAATGAACTTTGAGATTAAACCCAAGCTTGTTTCATCAATGGCGGCAGGGCTGGCTTTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051603 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1117 zf-RING_2 zinc_ribbon_9

Protein Analysis

417

Amino Acids

45.42

Weight (kDa)

9.11

Isoelectric Point (pI)

64.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	7 - 41	3.3e-10	zinc-ribbon
zf-RING_2	PF13639	183 - 225	6e-13	Ring finger domain
zf-C3HC4_2	PF13923	184 - 224	8.1e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	184 - 211	8.4e-08	RING-like zinc finger
zf-rbx1	PF12678	184 - 225	6.6e-07	RING-H2 zinc finger domain
zf-C3HC4	PF00097	184 - 224	9.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	184 - 222	6.9e-06	RING-type zinc-finger
DUF1117	PF06547	245 - 332	7.9e-32	Protein of unknown function (DUF1117)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39720 AT2G39720 AT3G46620 AT5G59550 AT5G59550
fragaria_vesca	FvH4_3g36860 FvH4_6g13340 FvH4_7g22850
malus_domestica	MD01G1136700.v1.1 MD03G1087100.v1.1 MD04G1131800.v1.1 MD07G1201700.v1.1 MD10G1074300.v1.1 MD11G1012900.v1.1 MD11G1096200.v1.1 MD12G1144900.v1.1
prunus_persica	Prupe.2G238300_v2.0.a1 Prupe.6G071800_v2.0.a1 Prupe.6G258400_v2.0.a1
pyrus_communis	pycom01g15740 pycom03g06910 pycom04g11990 pycom07g18870 pycom11g08150 pycom12g13930
rosa_chinensis	RchiOBHm_Chr1g0368011 RchiOBHm_Chr3g0466231 RchiOBHm_Chr5g0066071
rosa_laevigata	RLG00000024595 RLG00000027247 RLG00000035839
rosa_multiflora	Rmu_co8242689.1_g000001 Rmu_co8418295.1_g000001 Rmu_sc0000350.1_g000012 Rmu_sc0002406.1_g000005 Rmu_sc0005240.1_g000003 Rmu_sc0005240.1_g000004
rosa_roxburghii	Rroxscaffold_1G00014940 Rroxscaffold_4G00288940 Rroxscaffold_6G00414710
rosa_rugosa	Rorug01G0338400 Rorug03G0080500 Rorug05G0376200
rosa_samantha	Rh1AG345200 Rh1BG307500 Rh1CG323100 Rh1DG339600 Rh3BG147700 Rh3DG148400 Rh5AG434600 Rh5BG450900 Rh5CG473200 Rh5DG464500
rosa_wichuraiana	Rw1G030720 Rw3G011940 Rw5G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	20
Acc16I	TGCGCA	1 cut(s)	648
Acc36I	ACCTGC	1 cut(s)	33
AccB1I	GGYRCC	2 cut(s)	65, 782
AccBSI	CCGCTC	2 cut(s)	138, 894
AccII	CGCG	4 cut(s)	294, 731, 767, 866
AccIII	TCCGGA	1 cut(s)	91
AclWI	GGATC	2 cut(s)	342, 355
AcoI	YGGCCR	2 cut(s)	473, 1007
AcsI	RAATTY	2 cut(s)	655, 1177
AcvI	CACGTG	2 cut(s)	148, 532
AcyI	GRCGYC	2 cut(s)	17, 783
AfaI	GTAC	3 cut(s)	179, 617, 1187
AfiI	CCNNNNNNNGG	3 cut(s)	98, 758, 1083
AflIII	ACRYGT	1 cut(s)	381
AgeI	ACCGGT	1 cut(s)	79
AgsI	TTSAA	3 cut(s)	274, 448, 575
AjnI	CCWGG	1 cut(s)	1004
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AloI	GAACNNNNNNTCC	2 cut(s)	573, 605
AluBI	AGCT	8 cut(s)	121, 331, 430, 517, 682, 820, 1073, 1216
AluI	AGCT	8 cut(s)	121, 331, 430, 517, 682, 820, 1073, 1216
Alw21I	GWGCWC	2 cut(s)	123, 519
AlwI	GGATC	2 cut(s)	342, 355
Ama87I	CYCGRG	1 cut(s)	398
Aor13HI	TCCGGA	1 cut(s)	91
AoxI	GGCC	8 cut(s)	132, 365, 473, 1007, 1019, 1049, 1067, 1080
ApeKI	GCWGC	6 cut(s)	8, 167, 170, 479, 649, 682
ApoI	RAATTY	2 cut(s)	655, 1177
AscI	GGCGCGCC	1 cut(s)	864
AsiGI	ACCGGT	1 cut(s)	79
AspS9I	GGNCC	3 cut(s)	133, 402, 1081
AsuC2I	CCSGG	5 cut(s)	131, 352, 406, 753, 1084
AsuHPI	GGTGA	4 cut(s)	52, 69, 269, 1057
AvaI	CYCGRG	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	402
BamHI	GGATCC	1 cut(s)	347
BanI	GGYRCC	2 cut(s)	65, 782
BanII	GRGCYC	2 cut(s)	123, 519
BauI	CACGAG	1 cut(s)	949
BbrPI	CACGTG	2 cut(s)	148, 532
BbsI	GAAGAC	3 cut(s)	353, 913, 981
Bbv12I	GWGCWC	2 cut(s)	123, 519
BbvI	GCAGC	6 cut(s)	20, 154, 157, 491, 661, 669
BccI	CCATC	3 cut(s)	338, 835, 1060
BceAI	ACGGC	7 cut(s)	144, 262, 539, 622, 862, 874, 1095
BcgI	CGANNNNNNTGC	2 cut(s)	468, 502
BciT130I	CCWGG	1 cut(s)	1006
BcnI	CCSGG	5 cut(s)	131, 352, 406, 753, 1084
BfmI	CTRYAG	1 cut(s)	31
BfoI	RGCGCY	1 cut(s)	786
BfuAI	ACCTGC	1 cut(s)	33
Bme1390I	CCNGG	6 cut(s)	131, 352, 406, 753, 1006, 1084
Bme18I	GGWCC	1 cut(s)	402
BmeT110I	CYCGRG	1 cut(s)	398
BmgT120I	GGNCC	3 cut(s)	133, 402, 1081
BmiI	GGNNCC	6 cut(s)	67, 190, 208, 349, 403, 784
BmrFI	CCNGG	6 cut(s)	131, 352, 406, 753, 1006, 1084
BmsI	GCATC	2 cut(s)	588, 639
BpiI	GAAGAC	3 cut(s)	353, 913, 981
BpmI	CTGGAG	1 cut(s)	763
BpuMI	CCSGG	5 cut(s)	131, 352, 406, 753, 1084
Bsa29I	ATCGAT	1 cut(s)	441
BsaAI	YACGTR	2 cut(s)	148, 532
BsaHI	GRCGYC	2 cut(s)	17, 783
BsaJI	CCNNGG	4 cut(s)	638, 869, 980, 1077
BsaWI	WCCGGW	5 cut(s)	79, 91, 277, 664, 823
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 758, 1083
Bse118I	RCCGGY	8 cut(s)	62, 68, 79, 475, 672, 685, 785, 800
BseAI	TCCGGA	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	1006
BseCI	ATCGAT	1 cut(s)	441
BseDI	CCNNGG	4 cut(s)	638, 869, 980, 1077
BseGI	GGATG	2 cut(s)	630, 1052
BseLI	CCNNNNNNNGG	3 cut(s)	98, 758, 1083
BseMII	CTCAG	2 cut(s)	291, 701
BsePI	GCGCGC	1 cut(s)	864
BseRI	GAGGAG	5 cut(s)	317, 554, 886, 904, 984
BseX3I	CGGCCG	1 cut(s)	473
BseXI	GCAGC	6 cut(s)	20, 154, 157, 491, 661, 669
Bsh1236I	CGCG	4 cut(s)	294, 731, 767, 866
Bsh1285I	CGRYCG	5 cut(s)	266, 415, 476, 513, 986
BshFI	GGCC	8 cut(s)	134, 367, 475, 1009, 1021, 1051, 1069, 1082
BshNI	GGYRCC	2 cut(s)	65, 782
BshTI	ACCGGT	1 cut(s)	79
BshVI	ATCGAT	1 cut(s)	441
BsiEI	CGRYCG	5 cut(s)	266, 415, 476, 513, 986
BsiHKAI	GWGCWC	2 cut(s)	123, 519
BsiHKCI	CYCGRG	1 cut(s)	398
BslI	CCNNNNNNNGG	3 cut(s)	98, 758, 1083
BsnI	GGCC	8 cut(s)	134, 367, 475, 1009, 1021, 1051, 1069, 1082
BsoBI	CYCGRG	1 cut(s)	398
Bsp1286I	GDGCHC	2 cut(s)	123, 519
Bsp13I	TCCGGA	1 cut(s)	91
Bsp1407I	TGTACA	1 cut(s)	177
Bsp143I	GATC	8 cut(s)	183, 217, 263, 347, 438, 466, 510, 738
BspANI	GGCC	8 cut(s)	134, 367, 475, 1009, 1021, 1051, 1069, 1082
BspCNI	CTCAG	2 cut(s)	292, 702
BspDI	ATCGAT	1 cut(s)	441
BspEI	TCCGGA	1 cut(s)	91
BspFNI	CGCG	4 cut(s)	294, 731, 767, 866
BspHI	TCATGA	1 cut(s)	214
BspLI	GGNNCC	6 cut(s)	67, 190, 208, 349, 403, 784
BspMI	ACCTGC	1 cut(s)	33
BspPI	GGATC	2 cut(s)	342, 355
BspQI	GCTCTTC	2 cut(s)	111, 790
BspT107I	GGYRCC	2 cut(s)	65, 782
BsrBI	CCGCTC	2 cut(s)	138, 894
BsrFI	RCCGGY	8 cut(s)	62, 68, 79, 475, 672, 685, 785, 800
BsrGI	TGTACA	1 cut(s)	177
BssAI	RCCGGY	8 cut(s)	62, 68, 79, 475, 672, 685, 785, 800
BssECI	CCNNGG	4 cut(s)	638, 869, 980, 1077
BssHII	GCGCGC	1 cut(s)	864
BssMI	GATC	8 cut(s)	183, 217, 263, 347, 438, 466, 510, 738
BssNI	GRCGYC	2 cut(s)	17, 783
BssSI	CACGAG	1 cut(s)	949
Bst2BI	CACGAG	1 cut(s)	949
Bst2UI	CCWGG	1 cut(s)	1006
Bst6I	CTCTTC	3 cut(s)	111, 313, 790
BstACI	GRCGYC	2 cut(s)	17, 783
BstAPI	GCANNNNNTGC	1 cut(s)	682
BstAUI	TGTACA	1 cut(s)	177
BstBAI	YACGTR	2 cut(s)	148, 532
BstDEI	CTNAG	2 cut(s)	300, 710
BstDSI	CCRYGG	2 cut(s)	638, 1077
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	2 cut(s)	630, 1052
BstFNI	CGCG	4 cut(s)	294, 731, 767, 866
BstH2I	RGCGCY	1 cut(s)	786
BstKTI	GATC	8 cut(s)	186, 220, 266, 350, 441, 469, 513, 741
BstMBI	GATC	8 cut(s)	183, 217, 263, 347, 438, 466, 510, 738
BstMCI	CGRYCG	5 cut(s)	266, 415, 476, 513, 986
BstMWI	GCNNNNNNNGC	8 cut(s)	488, 558, 607, 649, 682, 976, 1079, 1241
BstNI	CCWGG	1 cut(s)	1006
BstNSI	RCATGY	2 cut(s)	385, 1151
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	6 cut(s)	129, 350, 404, 751, 1004, 1082
BstSFI	CTRYAG	1 cut(s)	31
BstUI	CGCG	4 cut(s)	294, 731, 767, 866
BstV1I	GCAGC	6 cut(s)	20, 154, 157, 491, 661, 669
BstV2I	GAAGAC	3 cut(s)	353, 913, 981
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BstZI	CGGCCG	1 cut(s)	473
Bsu15I	ATCGAT	1 cut(s)	441
BsuRI	GGCC	8 cut(s)	134, 367, 475, 1009, 1021, 1051, 1069, 1082
BsuTUI	ATCGAT	1 cut(s)	441
BtgI	CCRYGG	2 cut(s)	638, 1077
BtgZI	GCGATG	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	630, 1052
BtsI	GCAGTG	2 cut(s)	109, 547
BtsIMutI	CAGTG	2 cut(s)	109, 547
BveI	ACCTGC	1 cut(s)	33
CciI	TCATGA	1 cut(s)	214
Cfr10I	RCCGGY	8 cut(s)	62, 68, 79, 475, 672, 685, 785, 800
Cfr13I	GGNCC	3 cut(s)	133, 402, 1081
ClaI	ATCGAT	1 cut(s)	441
CseI	GACGC	2 cut(s)	918, 1096
Csp6I	GTAC	3 cut(s)	178, 616, 1186
CspAI	ACCGGT	1 cut(s)	79
CspCI	CAANNNNNGTGG	4 cut(s)	232, 267, 608, 643
CviAII	CATG	5 cut(s)	21, 181, 215, 382, 1148
CviQI	GTAC	3 cut(s)	178, 616, 1186
DdeI	CTNAG	2 cut(s)	300, 710
DinI	GGCGCC	1 cut(s)	784
DpnI	GATC	8 cut(s)	185, 219, 265, 349, 440, 468, 512, 740
DpnII	GATC	8 cut(s)	183, 217, 263, 347, 438, 466, 510, 738
DraI	TTTAAA	1 cut(s)	1182
EaeI	YGGCCR	2 cut(s)	473, 1007
EagI	CGGCCG	1 cut(s)	473
Eam1104I	CTCTTC	3 cut(s)	111, 313, 790
EarI	CTCTTC	3 cut(s)	111, 313, 790
EciI	GGCGGA	3 cut(s)	551, 774, 819
Ecl136II	GAGCTC	2 cut(s)	121, 517
EclXI	CGGCCG	1 cut(s)	473
Eco147I	AGGCCT	1 cut(s)	1021
Eco24I	GRGCYC	2 cut(s)	123, 519
Eco32I	GATATC	1 cut(s)	1170
Eco47I	GGWCC	1 cut(s)	402
Eco52I	CGGCCG	1 cut(s)	473
Eco53kI	GAGCTC	2 cut(s)	121, 517
Eco72I	CACGTG	2 cut(s)	148, 532
Eco88I	CYCGRG	1 cut(s)	398
Eco91I	GGTNACC	1 cut(s)	257
EcoICRI	GAGCTC	2 cut(s)	121, 517
EcoO65I	GGTNACC	1 cut(s)	257
EcoRI	GAATTC	1 cut(s)	655
EcoRII	CCWGG	1 cut(s)	1004
EcoRV	GATATC	1 cut(s)	1170
EcoT38I	GRGCYC	2 cut(s)	123, 519
EgeI	GGCGCC	1 cut(s)	784
EheI	GGCGCC	1 cut(s)	784
FaeI	CATG	5 cut(s)	24, 184, 218, 385, 1151
FatI	CATG	5 cut(s)	20, 180, 214, 381, 1147
FauI	CCCGC	4 cut(s)	143, 782, 842, 890
FauNDI	CATATG	1 cut(s)	612
FokI	GGATG	2 cut(s)	617, 1039
FriOI	GRGCYC	2 cut(s)	123, 519
FspI	TGCGCA	1 cut(s)	648
GsuI	CTGGAG	1 cut(s)	763
HaeII	RGCGCY	1 cut(s)	786
HaeIII	GGCC	8 cut(s)	134, 367, 475, 1009, 1021, 1051, 1069, 1082
HgaI	GACGC	2 cut(s)	918, 1096
Hin1I	GRCGYC	2 cut(s)	17, 783
Hin1II	CATG	5 cut(s)	24, 184, 218, 385, 1151
HincII	GTYRAC	1 cut(s)	1114
HindII	GTYRAC	1 cut(s)	1114
HindIII	AAGCTT	1 cut(s)	1214
HinfI	GANTC	9 cut(s)	74, 324, 424, 453, 497, 524, 692, 762, 921
HpaI	GTTAAC	1 cut(s)	1114
HphI	GGTGA	4 cut(s)	52, 69, 269, 1057
Hpy166II	GTNNAC	3 cut(s)	145, 691, 1114
Hpy188I	TCNGA	8 cut(s)	188, 224, 388, 458, 625, 711, 999, 1063
Hpy188III	TCNNGA	4 cut(s)	92, 215, 593, 742
Hpy8I	GTNNAC	3 cut(s)	145, 691, 1114
Hpy99I	CGWCG	5 cut(s)	16, 19, 228, 511, 524
HpyCH4IV	ACGT	3 cut(s)	17, 147, 531
HpyCH4V	TGCA	3 cut(s)	561, 606, 630
HpyF10VI	GCNNNNNNNGC	8 cut(s)	488, 558, 607, 649, 682, 976, 1079, 1241
HpyF3I	CTNAG	2 cut(s)	300, 710
HpySE526I	ACGT	3 cut(s)	17, 147, 531
Hsp92I	GRCGYC	2 cut(s)	17, 783
Hsp92II	CATG	5 cut(s)	24, 184, 218, 385, 1151
KasI	GGCGCC	1 cut(s)	782
Kpn2I	TCCGGA	1 cut(s)	91
KroI	GCCGGC	4 cut(s)	475, 672, 785, 800
KroNI	GCCGGC	4 cut(s)	477, 674, 787, 802
KspAI	GTTAAC	1 cut(s)	1114
Kzo9I	GATC	8 cut(s)	183, 217, 263, 347, 438, 466, 510, 738
LguI	GCTCTTC	2 cut(s)	111, 790
LmnI	GCTCC	5 cut(s)	143, 188, 817, 891, 1139
Lsp1109I	GCAGC	6 cut(s)	20, 154, 157, 491, 661, 669
LweI	GCATC	2 cut(s)	588, 639
MaeII	ACGT	3 cut(s)	17, 147, 531
MaeIII	GTNAC	4 cut(s)	23, 257, 377, 1157
MalI	GATC	8 cut(s)	185, 219, 265, 349, 440, 468, 512, 740
MbiI	CCGCTC	2 cut(s)	138, 894
MboI	GATC	8 cut(s)	183, 217, 263, 347, 438, 466, 510, 738
MboII	GAAGA	6 cut(s)	128, 330, 353, 807, 918, 981
MflI	RGATCY	1 cut(s)	347
MhlI	GDGCHC	2 cut(s)	123, 519
MluCI	AATT	5 cut(s)	569, 575, 655, 1057, 1177
Mly113I	GGCGCC	1 cut(s)	783
MlyI	GAGTC	5 cut(s)	68, 433, 506, 686, 930
MmeI	TCCRAC	1 cut(s)	247
MreI	CGCCGGCG	1 cut(s)	785
MroI	TCCGGA	1 cut(s)	91
MroNI	GCCGGC	4 cut(s)	475, 672, 785, 800
MseI	TTAA	5 cut(s)	855, 1113, 1140, 1181, 1206
MslI	CAYNNNNRTG	1 cut(s)	287
MspA1I	CMGCKG	4 cut(s)	167, 472, 652, 960
MspR9I	CCNGG	6 cut(s)	131, 352, 406, 753, 1006, 1084
MvaI	CCWGG	1 cut(s)	1006
MvnI	CGCG	4 cut(s)	294, 731, 767, 866
MwoI	GCNNNNNNNGC	8 cut(s)	488, 558, 607, 649, 682, 976, 1079, 1241
NaeI	GCCGGC	4 cut(s)	477, 674, 787, 802
NarI	GGCGCC	1 cut(s)	783
NciI	CCSGG	5 cut(s)	131, 352, 406, 753, 1084
NdeI	CATATG	1 cut(s)	612
NdeII	GATC	8 cut(s)	183, 217, 263, 347, 438, 466, 510, 738
NgoMIV	GCCGGC	4 cut(s)	475, 672, 785, 800
NlaIII	CATG	5 cut(s)	24, 184, 218, 385, 1151
NlaIV	GGNNCC	6 cut(s)	67, 190, 208, 349, 403, 784
NmeAIII	GCCGAG	3 cut(s)	102, 399, 894
NmuCI	GTSAC	2 cut(s)	257, 1157
NsbI	TGCGCA	1 cut(s)	648
NspI	RCATGY	2 cut(s)	385, 1151
PagI	TCATGA	1 cut(s)	214
PalAI	GGCGCGCC	1 cut(s)	864
PauI	GCGCGC	1 cut(s)	864
PceI	AGGCCT	1 cut(s)	1021
PciI	ACATGT	1 cut(s)	381
PciSI	GCTCTTC	2 cut(s)	111, 790
PcsI	WCGNNNNNNNCGW	4 cut(s)	462, 506, 519, 528
PdiI	GCCGGC	4 cut(s)	477, 674, 787, 802
PfeI	GAWTC	4 cut(s)	324, 453, 524, 762
PflFI	GACNNNGTC	2 cut(s)	16, 1099
PfoI	TCCNGGA	1 cut(s)	751
PinAI	ACCGGT	1 cut(s)	79
Ple19I	CGATCG	2 cut(s)	266, 513
PleI	GAGTC	5 cut(s)	68, 432, 505, 686, 929
PluTI	GGCGCC	1 cut(s)	786
PmaCI	CACGTG	2 cut(s)	148, 532
PmlI	CACGTG	2 cut(s)	148, 532
PpsI	GAGTC	5 cut(s)	68, 432, 505, 686, 929
Ppu21I	YACGTR	2 cut(s)	148, 532
PscI	ACATGT	1 cut(s)	381
Psp124BI	GAGCTC	2 cut(s)	123, 519
Psp6I	CCWGG	1 cut(s)	1004
PspCI	CACGTG	2 cut(s)	148, 532
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	1004
PspN4I	GGNNCC	6 cut(s)	67, 190, 208, 349, 403, 784
PspPI	GGNCC	3 cut(s)	133, 402, 1081
PsuI	RGATCY	1 cut(s)	347
PsyI	GACNNNGTC	2 cut(s)	16, 1099
PteI	GCGCGC	1 cut(s)	864
PvuI	CGATCG	2 cut(s)	266, 513
RsaI	GTAC	3 cut(s)	179, 617, 1187
RsaNI	GTAC	3 cut(s)	178, 616, 1186
RseI	CAYNNNNRTG	1 cut(s)	287
SacI	GAGCTC	2 cut(s)	123, 519
SapI	GCTCTTC	2 cut(s)	111, 790
SaqAI	TTAA	5 cut(s)	855, 1113, 1140, 1181, 1206
Sau3AI	GATC	8 cut(s)	183, 217, 263, 347, 438, 466, 510, 738
Sau96I	GGNCC	3 cut(s)	133, 402, 1081
SchI	GAGTC	5 cut(s)	68, 433, 506, 686, 930
ScrFI	CCNGG	6 cut(s)	131, 352, 406, 753, 1006, 1084
SduI	GDGCHC	2 cut(s)	123, 519
SfaNI	GCATC	2 cut(s)	588, 639
SfcI	CTRYAG	1 cut(s)	31
SfoI	GGCGCC	1 cut(s)	784
SgrAI	CRCCGGYG	3 cut(s)	68, 79, 785
SgsI	GGCGCGCC	1 cut(s)	864
SinI	GGWCC	1 cut(s)	402
SmiMI	CAYNNNNRTG	1 cut(s)	287
Sse9I	AATT	5 cut(s)	569, 575, 655, 1057, 1177
SseBI	AGGCCT	1 cut(s)	1021
SspDI	GGCGCC	1 cut(s)	782
SstI	GAGCTC	2 cut(s)	123, 519
StuI	AGGCCT	1 cut(s)	1021
StyD4I	CCNGG	6 cut(s)	129, 350, 404, 751, 1004, 1082
TaiI	ACGT	3 cut(s)	20, 150, 534
TaqI	TCGA	7 cut(s)	327, 411, 441, 513, 519, 887, 1172
TaqII	GACCGA	2 cut(s)	276, 972
TasI	AATT	5 cut(s)	569, 575, 655, 1057, 1177
TatI	WGTACW	2 cut(s)	177, 1185
TauI	GCSGC	8 cut(s)	102, 475, 704, 707, 731, 864, 897, 1235
TfiI	GAWTC	4 cut(s)	324, 453, 524, 762
Tru1I	TTAA	5 cut(s)	855, 1113, 1140, 1181, 1206
Tru9I	TTAA	5 cut(s)	855, 1113, 1140, 1181, 1206
TscAI	CASTG	2 cut(s)	109, 554
TseFI	GTSAC	2 cut(s)	257, 1157
TseI	GCWGC	6 cut(s)	8, 167, 170, 479, 649, 682
Tsp45I	GTSAC	2 cut(s)	257, 1157
TspDTI	ATGAA	5 cut(s)	37, 600, 1046, 1208, 1212
TspGWI	ACGGA	4 cut(s)	130, 465, 475, 851
TspRI	CASTG	2 cut(s)	109, 554
Tth111I	GACNNNGTC	2 cut(s)	16, 1099
VpaK11BI	GGWCC	1 cut(s)	402
XapI	RAATTY	2 cut(s)	655, 1177
XceI	RCATGY	2 cut(s)	385, 1151
ZraI	GACGTC	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.