Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001214

Physical Location & Seq

Genomic Coordinates Reverse (-)

50819169 .. 50825455

Gene Structure 6287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0376200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGTTGATCGTCTTTTTGAGGATATCTTTCAAATACTACAGTTAAACCCAGATGGAAAAAAGTTTGATAAGGTTACTCGAATTGAAGCAAAAAGTGAGACATGCGAGATGTTCATGCACCTAGATGTGAATACAGAGGTGTATCCCATGAAGGAAGGTGAGAAGTTCTCAATGGCTCTAACTTCTACACTCAACTTGGATGGAACACCTGACACTGGCTATTTCACTCCGGGAAATCGCAAGACGTTGGCCGATGAATATGAGTACGTCATGCAAGGGAAGCTTTTTAAAATCTCAGAAGGTTCTAAACGGGATCCTAAAGCGGAGGTAAATGCTTCATTTGCTGGGCTGTTGATGATGCTCAAGGGGGAATCCTCTCAATTCAAGAACTTTGAATTGGATCAAAGGCTGTTTCTCCTCATCAGGAAGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010035 GO:0010154 GO:0010200 GO:0010243 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0097305 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1117 zf-RING_2 zinc_ribbon_9

Protein Analysis

144

Amino Acids

16.58

Weight (kDa)

5.29

Isoelectric Point (pI)

14.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb8	PF03870	7 - 143	3.5e-49	RNA polymerase Rpb8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39720 AT2G39720 AT3G46620 AT5G59550 AT5G59550
fragaria_vesca	FvH4_3g36860 FvH4_6g13340 FvH4_7g22850
malus_domestica	MD01G1136700.v1.1 MD03G1087100.v1.1 MD04G1131800.v1.1 MD07G1201700.v1.1 MD10G1074300.v1.1 MD11G1012900.v1.1 MD11G1096200.v1.1 MD12G1144900.v1.1
prunus_persica	Prupe.2G238300_v2.0.a1 Prupe.6G071800_v2.0.a1 Prupe.6G258400_v2.0.a1
pyrus_communis	pycom01g15740 pycom03g06910 pycom04g11990 pycom07g18870 pycom11g08150 pycom12g13930
rosa_chinensis	RchiOBHm_Chr1g0368011 RchiOBHm_Chr3g0466231 RchiOBHm_Chr5g0066071
rosa_laevigata	RLG00000024595 RLG00000027247 RLG00000035839
rosa_multiflora	Rmu_co8242689.1_g000001 Rmu_co8418295.1_g000001 Rmu_sc0000350.1_g000012 Rmu_sc0002406.1_g000005 Rmu_sc0005240.1_g000003 Rmu_sc0005240.1_g000004
rosa_roxburghii	Rroxscaffold_1G00014940 Rroxscaffold_4G00288940 Rroxscaffold_6G00414710
rosa_rugosa	Rorug01G0338400 Rorug03G0080500 Rorug05G0376200
rosa_samantha	Rh1AG345200 Rh1BG307500 Rh1CG323100 Rh1DG339600 Rh3BG147700 Rh3DG148400 Rh5AG434600 Rh5BG450900 Rh5CG473200 Rh5DG464500
rosa_wichuraiana	Rw1G030720 Rw3G011940 Rw5G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	323
AclWI	GGATC	3 cut(s)	308, 321, 408
AcoI	YGGCCR	1 cut(s)	249
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	4 cut(s)	32, 86, 385, 395
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AluBI	AGCT	2 cut(s)	283, 430
AluI	AGCT	2 cut(s)	283, 430
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	3 cut(s)	308, 321, 408
AoxI	GGCC	1 cut(s)	249
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	170
BamHI	GGATCC	1 cut(s)	313
BccI	CCATC	2 cut(s)	47, 194
BciVI	GTATCC	1 cut(s)	153
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	122
BfmI	CTRYAG	2 cut(s)	38, 431
BfuI	GTATCC	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	1 cut(s)	348
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	1 cut(s)	407
BseYI	CCCAGC	1 cut(s)	344
BshFI	GGCC	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	92
BsnI	GGCC	1 cut(s)	251
Bsp143I	GATC	3 cut(s)	7, 313, 400
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	1 cut(s)	308
BspLI	GGNNCC	1 cut(s)	315
BspPI	GGATC	3 cut(s)	308, 321, 408
BsrI	ACTGG	1 cut(s)	220
BssMI	GATC	3 cut(s)	7, 313, 400
Bst4CI	ACNGT	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	295
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	3 cut(s)	10, 316, 403
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	3 cut(s)	7, 313, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	280, 341
BstNSI	RCATGY	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	2 cut(s)	38, 431
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuI	GTATCC	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	4 cut(s)	102, 115, 148, 271
CviJI	RGCY	7 cut(s)	176, 219, 251, 283, 349, 409, 430
CviKI_1	RGCY	7 cut(s)	176, 219, 251, 283, 349, 409, 430
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	1 cut(s)	295
DpnI	GATC	3 cut(s)	9, 315, 402
DpnII	GATC	3 cut(s)	7, 313, 400
DraI	TTTAAA	1 cut(s)	289
EaeI	YGGCCR	1 cut(s)	249
Eco32I	GATATC	1 cut(s)	25
EcoRV	GATATC	1 cut(s)	25
FaeI	CATG	4 cut(s)	105, 118, 151, 274
FaiI	YATR	6 cut(s)	103, 116, 149, 261, 272, 433
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FatI	CATG	4 cut(s)	101, 114, 147, 270
FokI	GGATG	1 cut(s)	212
FspBI	CTAG	1 cut(s)	122
GsaI	CCCAGC	1 cut(s)	348
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	1 cut(s)	230
Hin1II	CATG	4 cut(s)	105, 118, 151, 274
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	1 cut(s)	371
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	170
Hpy188I	TCNGA	1 cut(s)	298
Hpy188III	TCNNGA	2 cut(s)	385, 424
HpyAV	CCTTC	3 cut(s)	145, 149, 293
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4IV	ACGT	2 cut(s)	245, 267
HpyCH4V	TGCA	2 cut(s)	118, 274
HpyF10VI	GCNNNNNNNGC	2 cut(s)	280, 341
HpyF3I	CTNAG	1 cut(s)	295
HpySE526I	ACGT	2 cut(s)	245, 267
Hsp92II	CATG	4 cut(s)	105, 118, 151, 274
Kzo9I	GATC	3 cut(s)	7, 313, 400
LpnPI	CCDG	6 cut(s)	63, 201, 222, 243, 330, 409
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	2 cut(s)	245, 267
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	3 cut(s)	9, 315, 402
MboI	GATC	3 cut(s)	7, 313, 400
MflI	RGATCY	1 cut(s)	313
MluCI	AATT	3 cut(s)	81, 380, 395
MnlI	CCTC	5 cut(s)	13, 130, 319, 385, 428
MseI	TTAA	2 cut(s)	44, 288
MslI	CAYNNNNRTG	1 cut(s)	123
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	280, 341
NciI	CCSGG	1 cut(s)	231
NdeII	GATC	3 cut(s)	7, 313, 400
NlaIII	CATG	4 cut(s)	105, 118, 151, 274
NlaIV	GGNNCC	1 cut(s)	315
NspI	RCATGY	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	371
PfoI	TCCNGGA	1 cut(s)	229
PspFI	CCCAGC	1 cut(s)	344
PspN4I	GGNNCC	1 cut(s)	315
PsuI	RGATCY	1 cut(s)	313
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	2 cut(s)	44, 288
Sau3AI	GATC	3 cut(s)	7, 313, 400
ScrFI	CCNGG	1 cut(s)	231
SfaNI	GCATC	1 cut(s)	348
SfcI	CTRYAG	2 cut(s)	38, 431
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	3 cut(s)	81, 380, 395
SsiI	CCGC	1 cut(s)	323
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	42
TaiI	ACGT	2 cut(s)	248, 270
TaqI	TCGA	1 cut(s)	79
TasI	AATT	3 cut(s)	81, 380, 395
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	2 cut(s)	44, 288
Tru9I	TTAA	2 cut(s)	44, 288
TscAI	CASTG	1 cut(s)	220
TspDTI	ATGAA	4 cut(s)	103, 164, 270, 327
TspRI	CASTG	1 cut(s)	220
XceI	RCATGY	1 cut(s)	105
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.