Prupe.6G071800_v2.0.a1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
4899160 .. 4900822
1663 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G071800.1

Sequence Viewer

Length: 738 bp
ATGGCTACGTCATCGCCGTCGCCGACGACGTCGTATTGGTGCTACAGATGCACTCGCTTCGTCCGTGTCTGGGTACAGGACTCTACCCTCTCATGCCCCCACTGCGAAACCGGTTTTCTGGAAGAGATCGAAACGACGCCGCACCCACAGCCACCGCCGATCCATCACCACCGTCGATTCCCGTCCTCCCACGTCCACGATCAAAACCCGGCTCCGACTTCCCGCCGAGTCCGTCGGGCCCCCGTAGACAGGTCCTCCCCCTTCAACCCGGTTATTGTCCTACGTGGCGGGGCCGAGTCAAATACTGAGTCCAACTCGTTCGAGCTTTACTACGACGACGCTGCCGGGTCGGGGCTCCAGCCCCTCCCGCCCACCATGTCGGAGATCTTAATGGGCTCTGGCTTCGACCGGTTGCTCGACCAGCTCTCCCAGATTGAAATCACCGGGCTGGGCCGACCCGAAAATCCGCCCGCGTCTAAATCAGCCGTGGACTCTATGCCCGTTGTTCAAATCGGCGAAACACACGTCGTGTCGGATGCGCACTGCGCGGTCTGCAAGGAAGCATTCGAACTCGGGTCGGAGGCCCGAGAAATGCCGTGCAAGCACATATACCACTCGGATTGCATCCTCCCCTGGCTTGCTATGCGAAACTCGTGCCCGGTTTGCCGGCACGAGCTGCCCGCCGACCGAATGACCGAACTTCGGATCCCGGGTCTCGACGAGAGACCATGGGGCTGA

Protein Analysis

246

Amino Acids

27.34

Weight (kDa)

5.82

Isoelectric Point (pI)

77.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 32
Acc16I TGCGCA 1 cut(s) 540
AccI GTMKAC 1 cut(s) 246
AccII CGCG 2 cut(s) 473, 548
AciI CCGC 9 cut(s) 140, 155, 223, 288, 368, 467, 471, 548, 681
AclWI GGATC 3 cut(s) 154, 700, 713
AcyI GRCGYC 2 cut(s) 29, 137
AdeI CACNNNGTG 1 cut(s) 529
AfaI GTAC 1 cut(s) 75
AfiI CCNNNNNNNGG 4 cut(s) 70, 249, 351, 702
AflIII ACRYGT 1 cut(s) 523
AgeI ACCGGT 2 cut(s) 110, 408
AgsI TTSAA 3 cut(s) 265, 437, 509
AjiI CACGTC 2 cut(s) 193, 526
AjnI CCWGG 1 cut(s) 632
AloI GAACNNNNNNTCC 2 cut(s) 690, 722
AluBI AGCT 3 cut(s) 325, 424, 676
AluI AGCT 3 cut(s) 325, 424, 676
Alw26I GTCTC 2 cut(s) 718, 719
AlwI GGATC 3 cut(s) 154, 700, 713
Ama87I CYCGRG 3 cut(s) 572, 585, 709
AoxI GGCC 4 cut(s) 237, 291, 451, 582
ApaI GGGCCC 1 cut(s) 241
ApeKI GCWGC 2 cut(s) 341, 676
ArsI GACNNNNNNTTYG 4 cut(s) 293, 325, 510, 542
AsiGI ACCGGT 2 cut(s) 110, 408
AspLEI GCGC 2 cut(s) 541, 548
AspS9I GGNCC 6 cut(s) 237, 238, 252, 291, 451, 583
AsuC2I CCSGG 7 cut(s) 209, 269, 346, 445, 659, 710, 711
AsuHPI GGTGA 2 cut(s) 158, 433
AsuII TTCGAA 1 cut(s) 567
AvaI CYCGRG 3 cut(s) 572, 585, 709
AvaII GGWCC 1 cut(s) 252
BaeGI GKGCMC 2 cut(s) 241, 659
BamHI GGATCC 1 cut(s) 705
BanII GRGCYC 3 cut(s) 241, 357, 398
BauI CACGAG 2 cut(s) 652, 671
BbvI GCAGC 2 cut(s) 328, 663
BccI CCATC 1 cut(s) 171
BceAI ACGGC 2 cut(s) 470, 580
BcgI CGANNNNNNTGC 6 cut(s) 40, 74, 323, 357, 636, 670
BciT130I CCWGG 1 cut(s) 634
BcnI CCSGG 7 cut(s) 209, 269, 346, 445, 659, 710, 711
BcoDI GTCTC 2 cut(s) 718, 719
BfmI CTRYAG 1 cut(s) 43
BglII AGATCT 1 cut(s) 384
BisI GCNGC 3 cut(s) 140, 342, 677
BlsI GCNGC 3 cut(s) 141, 343, 678
Bme1390I CCNGG 8 cut(s) 209, 269, 346, 445, 634, 659, 710, 711
Bme18I GGWCC 1 cut(s) 252
BmeT110I CYCGRG 3 cut(s) 572, 585, 709
BmgBI CACGTC 2 cut(s) 193, 526
BmgT120I GGNCC 6 cut(s) 237, 238, 252, 291, 451, 583
BmiI GGNNCC 6 cut(s) 213, 239, 240, 292, 356, 707
BmrFI CCNGG 8 cut(s) 209, 269, 346, 445, 634, 659, 710, 711
BmsI GCATC 3 cut(s) 38, 526, 633
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BpmI CTGGAG 1 cut(s) 341
Bpu14I TTCGAA 1 cut(s) 567
BpuMI CCSGG 7 cut(s) 209, 269, 346, 445, 659, 710, 711
BsaAI YACGTR 1 cut(s) 284
BsaBI GATNNNNATC 1 cut(s) 437
BsaHI GRCGYC 2 cut(s) 29, 137
BsaI GGTCTC 2 cut(s) 718, 719
BsaJI CCNNGG 4 cut(s) 486, 632, 709, 728
BsaWI WCCGGW 2 cut(s) 110, 408
BsaXI ACNNNNNCTCC 4 cut(s) 239, 269, 410, 440
Bsc4I CCNNNNNNNGG 4 cut(s) 70, 249, 351, 702
Bse118I RCCGGY 3 cut(s) 110, 408, 666
Bse8I GATNNNNATC 1 cut(s) 437
BseBI CCWGG 1 cut(s) 634
BseDI CCNNGG 4 cut(s) 486, 632, 709, 728
BseGI GGATG 2 cut(s) 541, 624
BseJI GATNNNNATC 1 cut(s) 437
BseLI CCNNNNNNNGG 4 cut(s) 70, 249, 351, 702
BseMII CTCAG 1 cut(s) 297
BseSI GKGCMC 2 cut(s) 241, 659
BseXI GCAGC 2 cut(s) 328, 663
BseYI CCCAGC 1 cut(s) 448
Bsh1236I CGCG 2 cut(s) 473, 548
Bsh1285I CGRYCG 2 cut(s) 409, 688
BshFI GGCC 4 cut(s) 239, 293, 453, 584
BshTI ACCGGT 2 cut(s) 110, 408
BsiEI CGRYCG 2 cut(s) 409, 688
BsiHKCI CYCGRG 3 cut(s) 572, 585, 709
BsiSI CCGG 9 cut(s) 111, 209, 269, 345, 409, 444, 659, 667, 710
BslI CCNNNNNNNGG 4 cut(s) 70, 249, 351, 702
BsmAI GTCTC 2 cut(s) 718, 719
BsmI GAATGC 1 cut(s) 563
BsnI GGCC 4 cut(s) 239, 293, 453, 584
Bso31I GGTCTC 2 cut(s) 718, 719
BsoBI CYCGRG 3 cut(s) 572, 585, 709
Bsp119I TTCGAA 1 cut(s) 567
Bsp120I GGGCCC 1 cut(s) 237
Bsp1286I GDGCHC 4 cut(s) 241, 357, 398, 659
Bsp143I GATC 5 cut(s) 126, 159, 199, 384, 705
Bsp19I CCATGG 1 cut(s) 728
BspACI CCGC 9 cut(s) 140, 155, 223, 288, 368, 467, 471, 548, 681
BspANI GGCC 4 cut(s) 239, 293, 453, 584
BspCNI CTCAG 1 cut(s) 298
BspFNI CGCG 2 cut(s) 473, 548
BspLI GGNNCC 6 cut(s) 213, 239, 240, 292, 356, 707
BspPI GGATC 3 cut(s) 154, 700, 713
BspT104I TTCGAA 1 cut(s) 567
BspTNI GGTCTC 2 cut(s) 718, 719
BsrFI RCCGGY 3 cut(s) 110, 408, 666
BssAI RCCGGY 3 cut(s) 110, 408, 666
BssECI CCNNGG 4 cut(s) 486, 632, 709, 728
BssMI GATC 5 cut(s) 126, 159, 199, 384, 705
BssNI GRCGYC 2 cut(s) 29, 137
BssSI CACGAG 2 cut(s) 652, 671
BssT1I CCWWGG 1 cut(s) 728
Bst2BI CACGAG 2 cut(s) 652, 671
Bst2UI CCWGG 1 cut(s) 634
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 117
BstACI GRCGYC 2 cut(s) 29, 137
BstAPI GCANNNNNTGC 1 cut(s) 676
BstBAI YACGTR 1 cut(s) 284
BstBI TTCGAA 1 cut(s) 567
BstC8I GCNNGC 5 cut(s) 471, 602, 639, 668, 681
BstDEI CTNAG 1 cut(s) 306
BstDSI CCRYGG 2 cut(s) 486, 728
BstF5I GGATG 2 cut(s) 541, 624
BstFNI CGCG 2 cut(s) 473, 548
BstHHI GCGC 2 cut(s) 541, 548
BstKTI GATC 5 cut(s) 129, 162, 202, 387, 708
BstMAI GTCTC 2 cut(s) 718, 719
BstMBI GATC 5 cut(s) 126, 159, 199, 384, 705
BstMCI CGRYCG 2 cut(s) 409, 688
BstNI CCWGG 1 cut(s) 634
BstSCI CCNGG 8 cut(s) 207, 267, 344, 443, 632, 657, 708, 709
BstSFI CTRYAG 1 cut(s) 43
BstSLI GKGCMC 2 cut(s) 241, 659
BstUI CGCG 2 cut(s) 473, 548
BstV1I GCAGC 2 cut(s) 328, 663
BstX2I RGATCY 2 cut(s) 384, 705
BstYI RGATCY 2 cut(s) 384, 705
BsuRI GGCC 4 cut(s) 239, 293, 453, 584
BtgI CCRYGG 2 cut(s) 486, 728
BtrI CACGTC 2 cut(s) 193, 526
BtsCI GGATG 2 cut(s) 541, 624
BtsI GCAGTG 2 cut(s) 100, 541
BtsIMutI CAGTG 2 cut(s) 100, 541
Cac8I GCNNGC 5 cut(s) 471, 602, 639, 668, 681
CfoI GCGC 2 cut(s) 541, 548
Cfr10I RCCGGY 3 cut(s) 110, 408, 666
Cfr13I GGNCC 6 cut(s) 237, 238, 252, 291, 451, 583
Cfr9I CCCGGG 1 cut(s) 709
CseI GACGC 3 cut(s) 145, 347, 462
Csp6I GTAC 1 cut(s) 74
CspAI ACCGGT 2 cut(s) 110, 408
CspCI CAANNNNNGTGG 2 cut(s) 602, 637
CviAII CATG 3 cut(s) 93, 376, 729
CviQI GTAC 1 cut(s) 74
DdeI CTNAG 1 cut(s) 306
DpnI GATC 5 cut(s) 128, 161, 201, 386, 707
DpnII GATC 5 cut(s) 126, 159, 199, 384, 705
DraIII CACNNNGTG 1 cut(s) 529
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
EciI GGCGGA 1 cut(s) 456
Eco130I CCWWGG 1 cut(s) 728
Eco24I GRGCYC 3 cut(s) 241, 357, 398
Eco31I GGTCTC 2 cut(s) 718, 719
Eco47I GGWCC 1 cut(s) 252
Eco88I CYCGRG 3 cut(s) 572, 585, 709
EcoO109I RGGNCCY 2 cut(s) 238, 252
EcoRII CCWGG 1 cut(s) 632
EcoT14I CCWWGG 1 cut(s) 728
EcoT38I GRGCYC 3 cut(s) 241, 357, 398
ErhI CCWWGG 1 cut(s) 728
FaeI CATG 3 cut(s) 96, 379, 732
FaiI YATR 7 cut(s) 94, 377, 497, 608, 610, 644, 730
FatI CATG 3 cut(s) 92, 375, 728
FauI CCCGC 5 cut(s) 230, 281, 375, 478, 688
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 3 cut(s) 140, 342, 677
FokI GGATG 2 cut(s) 548, 611
FriOI GRGCYC 3 cut(s) 241, 357, 398
Fsp4HI GCNGC 3 cut(s) 140, 342, 677
FspAI RTGCGCAY 1 cut(s) 540
FspI TGCGCA 1 cut(s) 540
GlaI GCGC 2 cut(s) 540, 547
GluI GCNGC 3 cut(s) 140, 342, 677
GsaI CCCAGC 1 cut(s) 452
GsuI CTGGAG 1 cut(s) 341
HaeIII GGCC 4 cut(s) 239, 293, 453, 584
HapII CCGG 9 cut(s) 111, 209, 269, 345, 409, 444, 659, 667, 710
HgaI GACGC 3 cut(s) 145, 347, 462
HhaI GCGC 2 cut(s) 541, 548
Hin1I GRCGYC 2 cut(s) 29, 137
Hin1II CATG 3 cut(s) 96, 379, 732
Hin6I GCGC 2 cut(s) 539, 546
HinP1I GCGC 2 cut(s) 539, 546
HinfI GANTC 6 cut(s) 80, 177, 228, 296, 308, 491
HpaII CCGG 9 cut(s) 111, 209, 269, 345, 409, 444, 659, 667, 710
HphI GGTGA 2 cut(s) 158, 433
Hpy166II GTNNAC 3 cut(s) 196, 247, 490
Hpy188I TCNGA 6 cut(s) 216, 382, 535, 580, 619, 705
Hpy188III TCNNGA 2 cut(s) 119, 716
Hpy8I GTNNAC 3 cut(s) 196, 247, 490
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4IV ACGT 5 cut(s) 8, 29, 192, 283, 525
HpyCH4V TGCA 4 cut(s) 51, 555, 600, 624
HpyF3I CTNAG 1 cut(s) 306
HpySE526I ACGT 5 cut(s) 8, 29, 192, 283, 525
Hsp92I GRCGYC 2 cut(s) 29, 137
Hsp92II CATG 3 cut(s) 96, 379, 732
HspAI GCGC 2 cut(s) 539, 546
KroI GCCGGC 1 cut(s) 666
KroNI GCCGGC 1 cut(s) 668
Kzo9I GATC 5 cut(s) 126, 159, 199, 384, 705
LmnI GCTCC 2 cut(s) 217, 360
Lsp1109I GCAGC 2 cut(s) 328, 663
LweI GCATC 3 cut(s) 38, 526, 633
MaeII ACGT 5 cut(s) 8, 29, 192, 283, 525
MalI GATC 5 cut(s) 128, 161, 201, 386, 707
MboI GATC 5 cut(s) 126, 159, 199, 384, 705
MboII GAAGA 1 cut(s) 134
MflI RGATCY 2 cut(s) 384, 705
MhlI GDGCHC 4 cut(s) 241, 357, 398, 659
MlyI GAGTC 5 cut(s) 74, 237, 305, 317, 485
MmeI TCCRAC 5 cut(s) 239, 336, 360, 513, 558
MnlI CCTC 6 cut(s) 98, 196, 265, 374, 574, 638
MroNI GCCGGC 1 cut(s) 666
MseI TTAA 1 cut(s) 389
MspI CCGG 9 cut(s) 111, 209, 269, 345, 409, 444, 659, 667, 710
MspR9I CCNGG 8 cut(s) 209, 269, 346, 445, 634, 659, 710, 711
Mva1269I GAATGC 1 cut(s) 563
MvaI CCWGG 1 cut(s) 634
MvnI CGCG 2 cut(s) 473, 548
NaeI GCCGGC 1 cut(s) 668
NciI CCSGG 7 cut(s) 209, 269, 346, 445, 659, 710, 711
NcoI CCATGG 1 cut(s) 728
NdeII GATC 5 cut(s) 126, 159, 199, 384, 705
NgoMIV GCCGGC 1 cut(s) 666
NlaIII CATG 3 cut(s) 96, 379, 732
NlaIV GGNNCC 6 cut(s) 213, 239, 240, 292, 356, 707
NmeAIII GCCGAG 2 cut(s) 251, 319
NsbI TGCGCA 1 cut(s) 540
NspV TTCGAA 1 cut(s) 567
PcsI WCGNNNNNNNCGW 4 cut(s) 14, 20, 26, 61
PctI GAATGC 1 cut(s) 563
PdiI GCCGGC 1 cut(s) 668
PfeI GAWTC 1 cut(s) 177
PflFI GACNNNGTC 1 cut(s) 28
PinAI ACCGGT 2 cut(s) 110, 408
PkrI GCNGC 3 cut(s) 141, 343, 678
PleI GAGTC 5 cut(s) 74, 236, 304, 316, 485
PpsI GAGTC 5 cut(s) 74, 236, 304, 316, 485
Ppu21I YACGTR 1 cut(s) 284
PpuMI RGGWCCY 1 cut(s) 252
Psp5II RGGWCCY 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 632
PspFI CCCAGC 1 cut(s) 448
PspGI CCWGG 1 cut(s) 632
PspN4I GGNNCC 6 cut(s) 213, 239, 240, 292, 356, 707
PspOMI GGGCCC 1 cut(s) 237
PspPI GGNCC 6 cut(s) 237, 238, 252, 291, 451, 583
PspPPI RGGWCCY 1 cut(s) 252
PsuI RGATCY 2 cut(s) 384, 705
PsyI GACNNNGTC 1 cut(s) 28
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
SaqAI TTAA 1 cut(s) 389
SatI GCNGC 3 cut(s) 140, 342, 677
Sau3AI GATC 5 cut(s) 126, 159, 199, 384, 705
Sau96I GGNCC 6 cut(s) 237, 238, 252, 291, 451, 583
SchI GAGTC 5 cut(s) 74, 237, 305, 317, 485
ScrFI CCNGG 8 cut(s) 209, 269, 346, 445, 634, 659, 710, 711
SduI GDGCHC 4 cut(s) 241, 357, 398, 659
SetI ASST 9 cut(s) 11, 32, 195, 254, 286, 327, 426, 528, 678
SfaNI GCATC 3 cut(s) 38, 526, 633
SfcI CTRYAG 1 cut(s) 43
SfuI TTCGAA 1 cut(s) 567
SinI GGWCC 1 cut(s) 252
SmaI CCCGGG 1 cut(s) 711
SsiI CCGC 9 cut(s) 140, 155, 223, 288, 368, 467, 471, 548, 681
StyD4I CCNGG 8 cut(s) 207, 267, 344, 443, 632, 657, 708, 709
StyI CCWWGG 1 cut(s) 728
TaaI ACNGT 1 cut(s) 173
TaiI ACGT 5 cut(s) 11, 32, 195, 286, 528
TaqI TCGA 7 cut(s) 129, 175, 321, 405, 417, 567, 717
TaqII GACCGA 2 cut(s) 702, 710
TauI GCSGC 1 cut(s) 142
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TscAI CASTG 2 cut(s) 107, 548
TseI GCWGC 2 cut(s) 341, 676
TspGWI ACGGA 2 cut(s) 53, 221
TspMI CCCGGG 1 cut(s) 709
TspRI CASTG 2 cut(s) 107, 548
Tth111I GACNNNGTC 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 252
XmaI CCCGGG 1 cut(s) 709
XmiI GTMKAC 1 cut(s) 246
ZraI GACGTC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.