E3 ubiquitin-protein ligase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 32 |
| Acc16I | TGCGCA | 1 cut(s) | 540 |
| AccI | GTMKAC | 1 cut(s) | 246 |
| AccII | CGCG | 2 cut(s) | 473, 548 |
| AciI | CCGC | 9 cut(s) | 140, 155, 223, 288, 368, 467, 471, 548, 681 |
| AclWI | GGATC | 3 cut(s) | 154, 700, 713 |
| AcyI | GRCGYC | 2 cut(s) | 29, 137 |
| AdeI | CACNNNGTG | 1 cut(s) | 529 |
| AfaI | GTAC | 1 cut(s) | 75 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 70, 249, 351, 702 |
| AflIII | ACRYGT | 1 cut(s) | 523 |
| AgeI | ACCGGT | 2 cut(s) | 110, 408 |
| AgsI | TTSAA | 3 cut(s) | 265, 437, 509 |
| AjiI | CACGTC | 2 cut(s) | 193, 526 |
| AjnI | CCWGG | 1 cut(s) | 632 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 690, 722 |
| AluBI | AGCT | 3 cut(s) | 325, 424, 676 |
| AluI | AGCT | 3 cut(s) | 325, 424, 676 |
| Alw26I | GTCTC | 2 cut(s) | 718, 719 |
| AlwI | GGATC | 3 cut(s) | 154, 700, 713 |
| Ama87I | CYCGRG | 3 cut(s) | 572, 585, 709 |
| AoxI | GGCC | 4 cut(s) | 237, 291, 451, 582 |
| ApaI | GGGCCC | 1 cut(s) | 241 |
| ApeKI | GCWGC | 2 cut(s) | 341, 676 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 293, 325, 510, 542 |
| AsiGI | ACCGGT | 2 cut(s) | 110, 408 |
| AspLEI | GCGC | 2 cut(s) | 541, 548 |
| AspS9I | GGNCC | 6 cut(s) | 237, 238, 252, 291, 451, 583 |
| AsuC2I | CCSGG | 7 cut(s) | 209, 269, 346, 445, 659, 710, 711 |
| AsuHPI | GGTGA | 2 cut(s) | 158, 433 |
| AsuII | TTCGAA | 1 cut(s) | 567 |
| AvaI | CYCGRG | 3 cut(s) | 572, 585, 709 |
| AvaII | GGWCC | 1 cut(s) | 252 |
| BaeGI | GKGCMC | 2 cut(s) | 241, 659 |
| BamHI | GGATCC | 1 cut(s) | 705 |
| BanII | GRGCYC | 3 cut(s) | 241, 357, 398 |
| BauI | CACGAG | 2 cut(s) | 652, 671 |
| BbvI | GCAGC | 2 cut(s) | 328, 663 |
| BccI | CCATC | 1 cut(s) | 171 |
| BceAI | ACGGC | 2 cut(s) | 470, 580 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 40, 74, 323, 357, 636, 670 |
| BciT130I | CCWGG | 1 cut(s) | 634 |
| BcnI | CCSGG | 7 cut(s) | 209, 269, 346, 445, 659, 710, 711 |
| BcoDI | GTCTC | 2 cut(s) | 718, 719 |
| BfmI | CTRYAG | 1 cut(s) | 43 |
| BglII | AGATCT | 1 cut(s) | 384 |
| BisI | GCNGC | 3 cut(s) | 140, 342, 677 |
| BlsI | GCNGC | 3 cut(s) | 141, 343, 678 |
| Bme1390I | CCNGG | 8 cut(s) | 209, 269, 346, 445, 634, 659, 710, 711 |
| Bme18I | GGWCC | 1 cut(s) | 252 |
| BmeT110I | CYCGRG | 3 cut(s) | 572, 585, 709 |
| BmgBI | CACGTC | 2 cut(s) | 193, 526 |
| BmgT120I | GGNCC | 6 cut(s) | 237, 238, 252, 291, 451, 583 |
| BmiI | GGNNCC | 6 cut(s) | 213, 239, 240, 292, 356, 707 |
| BmrFI | CCNGG | 8 cut(s) | 209, 269, 346, 445, 634, 659, 710, 711 |
| BmsI | GCATC | 3 cut(s) | 38, 526, 633 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 299, 331 |
| BpmI | CTGGAG | 1 cut(s) | 341 |
| Bpu14I | TTCGAA | 1 cut(s) | 567 |
| BpuMI | CCSGG | 7 cut(s) | 209, 269, 346, 445, 659, 710, 711 |
| BsaAI | YACGTR | 1 cut(s) | 284 |
| BsaBI | GATNNNNATC | 1 cut(s) | 437 |
| BsaHI | GRCGYC | 2 cut(s) | 29, 137 |
| BsaI | GGTCTC | 2 cut(s) | 718, 719 |
| BsaJI | CCNNGG | 4 cut(s) | 486, 632, 709, 728 |
| BsaWI | WCCGGW | 2 cut(s) | 110, 408 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 239, 269, 410, 440 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 70, 249, 351, 702 |
| Bse118I | RCCGGY | 3 cut(s) | 110, 408, 666 |
| Bse8I | GATNNNNATC | 1 cut(s) | 437 |
| BseBI | CCWGG | 1 cut(s) | 634 |
| BseDI | CCNNGG | 4 cut(s) | 486, 632, 709, 728 |
| BseGI | GGATG | 2 cut(s) | 541, 624 |
| BseJI | GATNNNNATC | 1 cut(s) | 437 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 70, 249, 351, 702 |
| BseMII | CTCAG | 1 cut(s) | 297 |
| BseSI | GKGCMC | 2 cut(s) | 241, 659 |
| BseXI | GCAGC | 2 cut(s) | 328, 663 |
| BseYI | CCCAGC | 1 cut(s) | 448 |
| Bsh1236I | CGCG | 2 cut(s) | 473, 548 |
| Bsh1285I | CGRYCG | 2 cut(s) | 409, 688 |
| BshFI | GGCC | 4 cut(s) | 239, 293, 453, 584 |
| BshTI | ACCGGT | 2 cut(s) | 110, 408 |
| BsiEI | CGRYCG | 2 cut(s) | 409, 688 |
| BsiHKCI | CYCGRG | 3 cut(s) | 572, 585, 709 |
| BsiSI | CCGG | 9 cut(s) | 111, 209, 269, 345, 409, 444, 659, 667, 710 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 70, 249, 351, 702 |
| BsmAI | GTCTC | 2 cut(s) | 718, 719 |
| BsmI | GAATGC | 1 cut(s) | 563 |
| BsnI | GGCC | 4 cut(s) | 239, 293, 453, 584 |
| Bso31I | GGTCTC | 2 cut(s) | 718, 719 |
| BsoBI | CYCGRG | 3 cut(s) | 572, 585, 709 |
| Bsp119I | TTCGAA | 1 cut(s) | 567 |
| Bsp120I | GGGCCC | 1 cut(s) | 237 |
| Bsp1286I | GDGCHC | 4 cut(s) | 241, 357, 398, 659 |
| Bsp143I | GATC | 5 cut(s) | 126, 159, 199, 384, 705 |
| Bsp19I | CCATGG | 1 cut(s) | 728 |
| BspACI | CCGC | 9 cut(s) | 140, 155, 223, 288, 368, 467, 471, 548, 681 |
| BspANI | GGCC | 4 cut(s) | 239, 293, 453, 584 |
| BspCNI | CTCAG | 1 cut(s) | 298 |
| BspFNI | CGCG | 2 cut(s) | 473, 548 |
| BspLI | GGNNCC | 6 cut(s) | 213, 239, 240, 292, 356, 707 |
| BspPI | GGATC | 3 cut(s) | 154, 700, 713 |
| BspT104I | TTCGAA | 1 cut(s) | 567 |
| BspTNI | GGTCTC | 2 cut(s) | 718, 719 |
| BsrFI | RCCGGY | 3 cut(s) | 110, 408, 666 |
| BssAI | RCCGGY | 3 cut(s) | 110, 408, 666 |
| BssECI | CCNNGG | 4 cut(s) | 486, 632, 709, 728 |
| BssMI | GATC | 5 cut(s) | 126, 159, 199, 384, 705 |
| BssNI | GRCGYC | 2 cut(s) | 29, 137 |
| BssSI | CACGAG | 2 cut(s) | 652, 671 |
| BssT1I | CCWWGG | 1 cut(s) | 728 |
| Bst2BI | CACGAG | 2 cut(s) | 652, 671 |
| Bst2UI | CCWGG | 1 cut(s) | 634 |
| Bst4CI | ACNGT | 1 cut(s) | 173 |
| Bst6I | CTCTTC | 1 cut(s) | 117 |
| BstACI | GRCGYC | 2 cut(s) | 29, 137 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 676 |
| BstBAI | YACGTR | 1 cut(s) | 284 |
| BstBI | TTCGAA | 1 cut(s) | 567 |
| BstC8I | GCNNGC | 5 cut(s) | 471, 602, 639, 668, 681 |
| BstDEI | CTNAG | 1 cut(s) | 306 |
| BstDSI | CCRYGG | 2 cut(s) | 486, 728 |
| BstF5I | GGATG | 2 cut(s) | 541, 624 |
| BstFNI | CGCG | 2 cut(s) | 473, 548 |
| BstHHI | GCGC | 2 cut(s) | 541, 548 |
| BstKTI | GATC | 5 cut(s) | 129, 162, 202, 387, 708 |
| BstMAI | GTCTC | 2 cut(s) | 718, 719 |
| BstMBI | GATC | 5 cut(s) | 126, 159, 199, 384, 705 |
| BstMCI | CGRYCG | 2 cut(s) | 409, 688 |
| BstNI | CCWGG | 1 cut(s) | 634 |
| BstSCI | CCNGG | 8 cut(s) | 207, 267, 344, 443, 632, 657, 708, 709 |
| BstSFI | CTRYAG | 1 cut(s) | 43 |
| BstSLI | GKGCMC | 2 cut(s) | 241, 659 |
| BstUI | CGCG | 2 cut(s) | 473, 548 |
| BstV1I | GCAGC | 2 cut(s) | 328, 663 |
| BstX2I | RGATCY | 2 cut(s) | 384, 705 |
| BstYI | RGATCY | 2 cut(s) | 384, 705 |
| BsuRI | GGCC | 4 cut(s) | 239, 293, 453, 584 |
| BtgI | CCRYGG | 2 cut(s) | 486, 728 |
| BtrI | CACGTC | 2 cut(s) | 193, 526 |
| BtsCI | GGATG | 2 cut(s) | 541, 624 |
| BtsI | GCAGTG | 2 cut(s) | 100, 541 |
| BtsIMutI | CAGTG | 2 cut(s) | 100, 541 |
| Cac8I | GCNNGC | 5 cut(s) | 471, 602, 639, 668, 681 |
| CfoI | GCGC | 2 cut(s) | 541, 548 |
| Cfr10I | RCCGGY | 3 cut(s) | 110, 408, 666 |
| Cfr13I | GGNCC | 6 cut(s) | 237, 238, 252, 291, 451, 583 |
| Cfr9I | CCCGGG | 1 cut(s) | 709 |
| CseI | GACGC | 3 cut(s) | 145, 347, 462 |
| Csp6I | GTAC | 1 cut(s) | 74 |
| CspAI | ACCGGT | 2 cut(s) | 110, 408 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 602, 637 |
| CviAII | CATG | 3 cut(s) | 93, 376, 729 |
| CviQI | GTAC | 1 cut(s) | 74 |
| DdeI | CTNAG | 1 cut(s) | 306 |
| DpnI | GATC | 5 cut(s) | 128, 161, 201, 386, 707 |
| DpnII | GATC | 5 cut(s) | 126, 159, 199, 384, 705 |
| DraIII | CACNNNGTG | 1 cut(s) | 529 |
| Eam1104I | CTCTTC | 1 cut(s) | 117 |
| EarI | CTCTTC | 1 cut(s) | 117 |
| EciI | GGCGGA | 1 cut(s) | 456 |
| Eco130I | CCWWGG | 1 cut(s) | 728 |
| Eco24I | GRGCYC | 3 cut(s) | 241, 357, 398 |
| Eco31I | GGTCTC | 2 cut(s) | 718, 719 |
| Eco47I | GGWCC | 1 cut(s) | 252 |
| Eco88I | CYCGRG | 3 cut(s) | 572, 585, 709 |
| EcoO109I | RGGNCCY | 2 cut(s) | 238, 252 |
| EcoRII | CCWGG | 1 cut(s) | 632 |
| EcoT14I | CCWWGG | 1 cut(s) | 728 |
| EcoT38I | GRGCYC | 3 cut(s) | 241, 357, 398 |
| ErhI | CCWWGG | 1 cut(s) | 728 |
| FaeI | CATG | 3 cut(s) | 96, 379, 732 |
| FaiI | YATR | 7 cut(s) | 94, 377, 497, 608, 610, 644, 730 |
| FatI | CATG | 3 cut(s) | 92, 375, 728 |
| FauI | CCCGC | 5 cut(s) | 230, 281, 375, 478, 688 |
| FblI | GTMKAC | 1 cut(s) | 246 |
| Fnu4HI | GCNGC | 3 cut(s) | 140, 342, 677 |
| FokI | GGATG | 2 cut(s) | 548, 611 |
| FriOI | GRGCYC | 3 cut(s) | 241, 357, 398 |
| Fsp4HI | GCNGC | 3 cut(s) | 140, 342, 677 |
| FspAI | RTGCGCAY | 1 cut(s) | 540 |
| FspI | TGCGCA | 1 cut(s) | 540 |
| GlaI | GCGC | 2 cut(s) | 540, 547 |
| GluI | GCNGC | 3 cut(s) | 140, 342, 677 |
| GsaI | CCCAGC | 1 cut(s) | 452 |
| GsuI | CTGGAG | 1 cut(s) | 341 |
| HaeIII | GGCC | 4 cut(s) | 239, 293, 453, 584 |
| HapII | CCGG | 9 cut(s) | 111, 209, 269, 345, 409, 444, 659, 667, 710 |
| HgaI | GACGC | 3 cut(s) | 145, 347, 462 |
| HhaI | GCGC | 2 cut(s) | 541, 548 |
| Hin1I | GRCGYC | 2 cut(s) | 29, 137 |
| Hin1II | CATG | 3 cut(s) | 96, 379, 732 |
| Hin6I | GCGC | 2 cut(s) | 539, 546 |
| HinP1I | GCGC | 2 cut(s) | 539, 546 |
| HinfI | GANTC | 6 cut(s) | 80, 177, 228, 296, 308, 491 |
| HpaII | CCGG | 9 cut(s) | 111, 209, 269, 345, 409, 444, 659, 667, 710 |
| HphI | GGTGA | 2 cut(s) | 158, 433 |
| Hpy166II | GTNNAC | 3 cut(s) | 196, 247, 490 |
| Hpy188I | TCNGA | 6 cut(s) | 216, 382, 535, 580, 619, 705 |
| Hpy188III | TCNNGA | 2 cut(s) | 119, 716 |
| Hpy8I | GTNNAC | 3 cut(s) | 196, 247, 490 |
| HpyAV | CCTTC | 1 cut(s) | 271 |
| HpyCH4III | ACNGT | 1 cut(s) | 173 |
| HpyCH4IV | ACGT | 5 cut(s) | 8, 29, 192, 283, 525 |
| HpyCH4V | TGCA | 4 cut(s) | 51, 555, 600, 624 |
| HpyF3I | CTNAG | 1 cut(s) | 306 |
| HpySE526I | ACGT | 5 cut(s) | 8, 29, 192, 283, 525 |
| Hsp92I | GRCGYC | 2 cut(s) | 29, 137 |
| Hsp92II | CATG | 3 cut(s) | 96, 379, 732 |
| HspAI | GCGC | 2 cut(s) | 539, 546 |
| KroI | GCCGGC | 1 cut(s) | 666 |
| KroNI | GCCGGC | 1 cut(s) | 668 |
| Kzo9I | GATC | 5 cut(s) | 126, 159, 199, 384, 705 |
| LmnI | GCTCC | 2 cut(s) | 217, 360 |
| Lsp1109I | GCAGC | 2 cut(s) | 328, 663 |
| LweI | GCATC | 3 cut(s) | 38, 526, 633 |
| MaeII | ACGT | 5 cut(s) | 8, 29, 192, 283, 525 |
| MalI | GATC | 5 cut(s) | 128, 161, 201, 386, 707 |
| MboI | GATC | 5 cut(s) | 126, 159, 199, 384, 705 |
| MboII | GAAGA | 1 cut(s) | 134 |
| MflI | RGATCY | 2 cut(s) | 384, 705 |
| MhlI | GDGCHC | 4 cut(s) | 241, 357, 398, 659 |
| MlyI | GAGTC | 5 cut(s) | 74, 237, 305, 317, 485 |
| MmeI | TCCRAC | 5 cut(s) | 239, 336, 360, 513, 558 |
| MnlI | CCTC | 6 cut(s) | 98, 196, 265, 374, 574, 638 |
| MroNI | GCCGGC | 1 cut(s) | 666 |
| MseI | TTAA | 1 cut(s) | 389 |
| MspI | CCGG | 9 cut(s) | 111, 209, 269, 345, 409, 444, 659, 667, 710 |
| MspR9I | CCNGG | 8 cut(s) | 209, 269, 346, 445, 634, 659, 710, 711 |
| Mva1269I | GAATGC | 1 cut(s) | 563 |
| MvaI | CCWGG | 1 cut(s) | 634 |
| MvnI | CGCG | 2 cut(s) | 473, 548 |
| NaeI | GCCGGC | 1 cut(s) | 668 |
| NciI | CCSGG | 7 cut(s) | 209, 269, 346, 445, 659, 710, 711 |
| NcoI | CCATGG | 1 cut(s) | 728 |
| NdeII | GATC | 5 cut(s) | 126, 159, 199, 384, 705 |
| NgoMIV | GCCGGC | 1 cut(s) | 666 |
| NlaIII | CATG | 3 cut(s) | 96, 379, 732 |
| NlaIV | GGNNCC | 6 cut(s) | 213, 239, 240, 292, 356, 707 |
| NmeAIII | GCCGAG | 2 cut(s) | 251, 319 |
| NsbI | TGCGCA | 1 cut(s) | 540 |
| NspV | TTCGAA | 1 cut(s) | 567 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 14, 20, 26, 61 |
| PctI | GAATGC | 1 cut(s) | 563 |
| PdiI | GCCGGC | 1 cut(s) | 668 |
| PfeI | GAWTC | 1 cut(s) | 177 |
| PflFI | GACNNNGTC | 1 cut(s) | 28 |
| PinAI | ACCGGT | 2 cut(s) | 110, 408 |
| PkrI | GCNGC | 3 cut(s) | 141, 343, 678 |
| PleI | GAGTC | 5 cut(s) | 74, 236, 304, 316, 485 |
| PpsI | GAGTC | 5 cut(s) | 74, 236, 304, 316, 485 |
| Ppu21I | YACGTR | 1 cut(s) | 284 |
| PpuMI | RGGWCCY | 1 cut(s) | 252 |
| Psp5II | RGGWCCY | 1 cut(s) | 252 |
| Psp6I | CCWGG | 1 cut(s) | 632 |
| PspFI | CCCAGC | 1 cut(s) | 448 |
| PspGI | CCWGG | 1 cut(s) | 632 |
| PspN4I | GGNNCC | 6 cut(s) | 213, 239, 240, 292, 356, 707 |
| PspOMI | GGGCCC | 1 cut(s) | 237 |
| PspPI | GGNCC | 6 cut(s) | 237, 238, 252, 291, 451, 583 |
| PspPPI | RGGWCCY | 1 cut(s) | 252 |
| PsuI | RGATCY | 2 cut(s) | 384, 705 |
| PsyI | GACNNNGTC | 1 cut(s) | 28 |
| RsaI | GTAC | 1 cut(s) | 75 |
| RsaNI | GTAC | 1 cut(s) | 74 |
| SaqAI | TTAA | 1 cut(s) | 389 |
| SatI | GCNGC | 3 cut(s) | 140, 342, 677 |
| Sau3AI | GATC | 5 cut(s) | 126, 159, 199, 384, 705 |
| Sau96I | GGNCC | 6 cut(s) | 237, 238, 252, 291, 451, 583 |
| SchI | GAGTC | 5 cut(s) | 74, 237, 305, 317, 485 |
| ScrFI | CCNGG | 8 cut(s) | 209, 269, 346, 445, 634, 659, 710, 711 |
| SduI | GDGCHC | 4 cut(s) | 241, 357, 398, 659 |
| SetI | ASST | 9 cut(s) | 11, 32, 195, 254, 286, 327, 426, 528, 678 |
| SfaNI | GCATC | 3 cut(s) | 38, 526, 633 |
| SfcI | CTRYAG | 1 cut(s) | 43 |
| SfuI | TTCGAA | 1 cut(s) | 567 |
| SinI | GGWCC | 1 cut(s) | 252 |
| SmaI | CCCGGG | 1 cut(s) | 711 |
| SsiI | CCGC | 9 cut(s) | 140, 155, 223, 288, 368, 467, 471, 548, 681 |
| StyD4I | CCNGG | 8 cut(s) | 207, 267, 344, 443, 632, 657, 708, 709 |
| StyI | CCWWGG | 1 cut(s) | 728 |
| TaaI | ACNGT | 1 cut(s) | 173 |
| TaiI | ACGT | 5 cut(s) | 11, 32, 195, 286, 528 |
| TaqI | TCGA | 7 cut(s) | 129, 175, 321, 405, 417, 567, 717 |
| TaqII | GACCGA | 2 cut(s) | 702, 710 |
| TauI | GCSGC | 1 cut(s) | 142 |
| TfiI | GAWTC | 1 cut(s) | 177 |
| Tru1I | TTAA | 1 cut(s) | 389 |
| Tru9I | TTAA | 1 cut(s) | 389 |
| TscAI | CASTG | 2 cut(s) | 107, 548 |
| TseI | GCWGC | 2 cut(s) | 341, 676 |
| TspGWI | ACGGA | 2 cut(s) | 53, 221 |
| TspMI | CCCGGG | 1 cut(s) | 709 |
| TspRI | CASTG | 2 cut(s) | 107, 548 |
| Tth111I | GACNNNGTC | 1 cut(s) | 28 |
| VpaK11BI | GGWCC | 1 cut(s) | 252 |
| XmaI | CCCGGG | 1 cut(s) | 709 |
| XmiI | GTMKAC | 1 cut(s) | 246 |
| ZraI | GACGTC | 1 cut(s) | 30 |