Prupe.2G238300_v2.0.a1

E3 ubiquitin-protein ligase RING1-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
25893928 .. 25895803
1876 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G238300.1

Sequence Viewer

Length: 1173 bp
ATGTCCGCAGCGACGCCATCTTACTGGTGCTACAGATGTAGCCGCTTCGTCAGGGTTTTAAACGACGTCGCCGTCTCCTCCTCAGTGCTGTGCCCGGACTGCGGCAGTGGCTTCGTCGAGGATATCGACAACCCGACCCGCTCCGACTCGCGCCGCGTTAGGAGGATTCCAGCTGCTGCGATGTACATGATTGGAGCCAACAACCGTTCTGACTCCAATCCGGATCACACCGCTCCAAGCCCCTCGGGGCCCCGAAGACCTCGCCGGAACCAAGGCGACCGCTCGCCGTTCAACCCGGTCATCGTCCTTCGCGGGCCAACCTCCGAAGGTGCTACTTCGAACGAAGAAGGTCGCGGATTCGAGCTGTTCTACGATGACGGTGTTGGGTCGGGGCTCCGACCCTTACCTACAAGCATGTCCGAGTTTCTACTCGGGTCGGGTTTTGACCGCCTTCTCGAACAGCTGTCCCAGATCGAAATCAACGGAATCGGACGGTACGAGCAGAGACCCGCATCAAAATCTGCGGTGGAATCGATGCCGACGATCGAGCTCGACGAGTCTCACATAGCGGCGGAGCATCACTGCGCGGTGTGCAAAGAAGCGTTCGAAGTAGGAACCGAAGTTCGGGAAATGCCCTGCAAGCATATATACCACTCGGATTGTATACTCCCGTGGCTCTCCCTCCGAAACTCGTGTCCGGTATGCCGGCATGAACTGCCGGCCGATTCGGAGGCCGAGACGGGTCAGGAGGAGGACGAGAACGCGGGTCTTACGATCTGGAGGCTGCCCGGCGGCGGTTTCGCGGTGGGGAGATTCAGCGGCGGGAGAAGAGGCGTCGAGAGAGAGCTTCCGGTGGTGTACACGGAGATGGACGGCGGTTTTAACGGCGCAGGAGCTCCGAGGAGGATTTCGTGGTCGAGGAATGGAGGAAGAGGGAGACAGAGTGGTGGGTTGATGCGGTTTTTGCGGGGTTTGTTCGGTTGTTTTGGCGGGGTCCAGTCGTCGGCGGTTTCGGGTTCGGGTTCGGAGAGAAGGTTGGGGACGCCGACGCCGCCTCGAACGACGAGTCGTAGGAGGGTGAGGTTTATGGATTTGGAGCAGACGACGACGTCGACTCCGAGGCGGCGGAGGACTTGGTCGATGGATGTGAACAGTGGGATTGTTAGATGGTGA

Protein Analysis

391

Amino Acids

42.92

Weight (kDa)

8.52

Isoelectric Point (pI)

72.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 71, 1108
AatII GACGTC 2 cut(s) 69, 1112
AccBSI CCGCTC 3 cut(s) 141, 233, 282
AccI GTMKAC 2 cut(s) 664, 1112
AccII CGCG 7 cut(s) 151, 156, 312, 354, 587, 764, 803
AccIII TCCGGA 1 cut(s) 220
AclWI GGATC 1 cut(s) 231
AcoI YGGCCR 1 cut(s) 720
AcyI GRCGYC 6 cut(s) 14, 66, 834, 1043, 1049, 1109
AfaI GTAC 3 cut(s) 185, 497, 860
AfiI CCNNNNNNNGG 4 cut(s) 101, 624, 794, 1003
AgsI TTSAA 1 cut(s) 292
AloI GAACNNNNNNTCC 2 cut(s) 606, 638
AluBI AGCT 6 cut(s) 173, 364, 463, 550, 847, 896
AluI AGCT 6 cut(s) 173, 364, 463, 550, 847, 896
Alw21I GWGCWC 2 cut(s) 552, 898
Alw26I GTCTC 5 cut(s) 79, 499, 564, 731, 931
AlwI GGATC 1 cut(s) 231
AlwNI CAGNNNCTG 1 cut(s) 176
Ama87I CYCGRG 2 cut(s) 244, 431
Aor13HI TCCGGA 1 cut(s) 220
AoxI GGCC 4 cut(s) 248, 314, 720, 732
ApaI GGGCCC 1 cut(s) 252
ApeKI GCWGC 4 cut(s) 8, 173, 176, 784
ArsI GACNNNNNNTTYG 4 cut(s) 679, 711, 1051, 1083
AspLEI GCGC 3 cut(s) 153, 587, 890
AspS9I GGNCC 4 cut(s) 248, 249, 314, 994
AsuC2I CCSGG 3 cut(s) 95, 296, 789
AsuHPI GGTGA 1 cut(s) 1090
AsuII TTCGAA 2 cut(s) 338, 606
AvaI CYCGRG 2 cut(s) 244, 431
AvaII GGWCC 1 cut(s) 994
BaeGI GKGCMC 2 cut(s) 95, 252
BanII GRGCYC 4 cut(s) 252, 396, 552, 898
BauI CACGAG 1 cut(s) 691
BbsI GAAGAC 1 cut(s) 262
Bbv12I GWGCWC 2 cut(s) 552, 898
BbvI GCAGC 4 cut(s) 20, 160, 163, 771
BccI CCATC 4 cut(s) 25, 862, 1135, 1161
BceAI ACGGC 4 cut(s) 56, 271, 889, 901
BcgI CGANNNNNNTGC 2 cut(s) 94, 128
BcnI CCSGG 3 cut(s) 95, 296, 789
BcoDI GTCTC 5 cut(s) 79, 499, 564, 731, 931
BfmI CTRYAG 1 cut(s) 31
Bme1390I CCNGG 3 cut(s) 95, 296, 789
Bme18I GGWCC 1 cut(s) 994
BmeT110I CYCGRG 2 cut(s) 244, 431
BmgT120I GGNCC 4 cut(s) 248, 249, 314, 994
BmiI GGNNCC 8 cut(s) 196, 249, 250, 251, 269, 395, 616, 995
BmrFI CCNGG 3 cut(s) 95, 296, 789
BmsI GCATC 4 cut(s) 521, 525, 586, 945
BpiI GAAGAC 1 cut(s) 262
BpmI CTGGAG 1 cut(s) 799
Bpu14I TTCGAA 2 cut(s) 338, 606
BpuMI CCSGG 3 cut(s) 95, 296, 789
Bsa29I ATCGAT 1 cut(s) 533
BsaBI GATNNNNATC 1 cut(s) 476
BsaHI GRCGYC 6 cut(s) 14, 66, 834, 1043, 1049, 1109
BsaI GGTCTC 1 cut(s) 499
BsaJI CCNNGG 5 cut(s) 243, 271, 671, 899, 1118
BsaWI WCCGGW 3 cut(s) 220, 697, 850
BsaXI ACNNNNNCTCC 6 cut(s) 928, 958, 1019, 1049, 1099, 1129
Bsc4I CCNNNNNNNGG 4 cut(s) 101, 624, 794, 1003
Bse118I RCCGGY 2 cut(s) 705, 718
Bse1I ACTGG 2 cut(s) 29, 997
Bse8I GATNNNNATC 1 cut(s) 476
BseAI TCCGGA 1 cut(s) 220
BseCI ATCGAT 1 cut(s) 533
BseDI CCNNGG 5 cut(s) 243, 271, 671, 899, 1118
BseGI GGATG 1 cut(s) 1150
BseJI GATNNNNATC 1 cut(s) 476
BseLI CCNNNNNNNGG 4 cut(s) 101, 624, 794, 1003
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 2 cut(s) 29, 997
BseRI GAGGAG 4 cut(s) 67, 70, 764, 916
BseSI GKGCMC 2 cut(s) 95, 252
BseX3I CGGCCG 1 cut(s) 720
BseXI GCAGC 4 cut(s) 20, 160, 163, 771
Bsh1236I CGCG 7 cut(s) 151, 156, 312, 354, 587, 764, 803
Bsh1285I CGRYCG 3 cut(s) 280, 546, 723
BshFI GGCC 4 cut(s) 250, 316, 722, 734
BshVI ATCGAT 1 cut(s) 533
BsiEI CGRYCG 3 cut(s) 280, 546, 723
BsiHKAI GWGCWC 2 cut(s) 552, 898
BsiHKCI CYCGRG 2 cut(s) 244, 431
BsiSI CCGG 9 cut(s) 95, 221, 265, 296, 698, 706, 719, 789, 851
BslFI GGGAC 2 cut(s) 451, 1054
BslI CCNNNNNNNGG 4 cut(s) 101, 624, 794, 1003
BsmAI GTCTC 5 cut(s) 79, 499, 564, 731, 931
BsmBI CGTCTC 2 cut(s) 79, 731
BsmFI GGGAC 2 cut(s) 451, 1054
BsnI GGCC 4 cut(s) 250, 316, 722, 734
Bso31I GGTCTC 1 cut(s) 499
BsoBI CYCGRG 2 cut(s) 244, 431
Bsp119I TTCGAA 2 cut(s) 338, 606
Bsp120I GGGCCC 1 cut(s) 248
Bsp1286I GDGCHC 5 cut(s) 95, 252, 396, 552, 898
Bsp13I TCCGGA 1 cut(s) 220
Bsp1407I TGTACA 2 cut(s) 183, 858
Bsp143I GATC 4 cut(s) 223, 471, 543, 774
BspANI GGCC 4 cut(s) 250, 316, 722, 734
BspCNI CTCAG 1 cut(s) 95
BspDI ATCGAT 1 cut(s) 533
BspEI TCCGGA 1 cut(s) 220
BspFNI CGCG 7 cut(s) 151, 156, 312, 354, 587, 764, 803
BspLI GGNNCC 8 cut(s) 196, 249, 250, 251, 269, 395, 616, 995
BspPI GGATC 1 cut(s) 231
BspT104I TTCGAA 2 cut(s) 338, 606
BspTNI GGTCTC 1 cut(s) 499
BsrBI CCGCTC 3 cut(s) 141, 233, 282
BsrFI RCCGGY 2 cut(s) 705, 718
BsrGI TGTACA 2 cut(s) 183, 858
BsrI ACTGG 2 cut(s) 29, 997
BssAI RCCGGY 2 cut(s) 705, 718
BssECI CCNNGG 5 cut(s) 243, 271, 671, 899, 1118
BssMI GATC 4 cut(s) 223, 471, 543, 774
BssNAI GTATAC 1 cut(s) 665
BssNI GRCGYC 6 cut(s) 14, 66, 834, 1043, 1049, 1109
BssSI CACGAG 1 cut(s) 691
BssT1I CCWWGG 1 cut(s) 271
Bst1107I GTATAC 1 cut(s) 665
Bst2BI CACGAG 1 cut(s) 691
Bst4CI ACNGT 4 cut(s) 206, 380, 495, 1154
Bst6I CTCTTC 2 cut(s) 823, 925
BstACI GRCGYC 6 cut(s) 14, 66, 834, 1043, 1049, 1109
BstAPI GCANNNNNTGC 1 cut(s) 715
BstAUI TGTACA 2 cut(s) 183, 858
BstBI TTCGAA 2 cut(s) 338, 606
BstC8I GCNNGC 5 cut(s) 284, 314, 641, 707, 720
BstDEI CTNAG 1 cut(s) 82
BstDSI CCRYGG 1 cut(s) 671
BstF5I GGATG 1 cut(s) 1150
BstFNI CGCG 7 cut(s) 151, 156, 312, 354, 587, 764, 803
BstHHI GCGC 3 cut(s) 153, 587, 890
BstKTI GATC 4 cut(s) 226, 474, 546, 777
BstMAI GTCTC 5 cut(s) 79, 499, 564, 731, 931
BstMBI GATC 4 cut(s) 223, 471, 543, 774
BstMCI CGRYCG 3 cut(s) 280, 546, 723
BstMWI GCNNNNNNNGC 7 cut(s) 99, 108, 591, 640, 715, 964, 1051
BstNSI RCATGY 1 cut(s) 418
BstSCI CCNGG 3 cut(s) 93, 294, 787
BstSFI CTRYAG 1 cut(s) 31
BstSLI GKGCMC 2 cut(s) 95, 252
BstUI CGCG 7 cut(s) 151, 156, 312, 354, 587, 764, 803
BstV1I GCAGC 4 cut(s) 20, 160, 163, 771
BstV2I GAAGAC 1 cut(s) 262
BstXI CCANNNNNNTGG 1 cut(s) 24
BstZ17I GTATAC 1 cut(s) 665
BstZI CGGCCG 1 cut(s) 720
Bsu15I ATCGAT 1 cut(s) 533
BsuRI GGCC 4 cut(s) 250, 316, 722, 734
BsuTUI ATCGAT 1 cut(s) 533
BtgI CCRYGG 1 cut(s) 671
BtgZI GCGATG 1 cut(s) 194
BtsCI GGATG 1 cut(s) 1150
BtsI GCAGTG 2 cut(s) 112, 580
BtsIMutI CAGTG 4 cut(s) 90, 112, 580, 1159
Cac8I GCNNGC 5 cut(s) 284, 314, 641, 707, 720
CaiI CAGNNNCTG 1 cut(s) 176
CfoI GCGC 3 cut(s) 153, 587, 890
Cfr10I RCCGGY 2 cut(s) 705, 718
Cfr13I GGNCC 4 cut(s) 248, 249, 314, 994
ClaI ATCGAT 1 cut(s) 533
CseI GACGC 4 cut(s) 22, 823, 1051, 1057
Csp6I GTAC 3 cut(s) 184, 496, 859
CspCI CAANNNNNGTGG 2 cut(s) 641, 676
CviAII CATG 3 cut(s) 187, 415, 710
CviQI GTAC 3 cut(s) 184, 496, 859
DdeI CTNAG 1 cut(s) 82
DpnI GATC 4 cut(s) 225, 473, 545, 776
DpnII GATC 4 cut(s) 223, 471, 543, 774
DraI TTTAAA 1 cut(s) 60
DrdI GACNNNNNNGTC 2 cut(s) 71, 1108
DseDI GACNNNNNNGTC 2 cut(s) 71, 1108
EaeI YGGCCR 1 cut(s) 720
EagI CGGCCG 1 cut(s) 720
Eam1104I CTCTTC 2 cut(s) 823, 925
EarI CTCTTC 2 cut(s) 823, 925
EciI GGCGGA 2 cut(s) 587, 1141
Ecl136II GAGCTC 2 cut(s) 550, 896
EclXI CGGCCG 1 cut(s) 720
Eco130I CCWWGG 1 cut(s) 271
Eco24I GRGCYC 4 cut(s) 252, 396, 552, 898
Eco31I GGTCTC 1 cut(s) 499
Eco32I GATATC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 994
Eco52I CGGCCG 1 cut(s) 720
Eco53kI GAGCTC 2 cut(s) 550, 896
Eco88I CYCGRG 2 cut(s) 244, 431
EcoICRI GAGCTC 2 cut(s) 550, 896
EcoO109I RGGNCCY 2 cut(s) 248, 249
EcoRV GATATC 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 271
EcoT38I GRGCYC 4 cut(s) 252, 396, 552, 898
ErhI CCWWGG 1 cut(s) 271
Esp3I CGTCTC 2 cut(s) 79, 731
FaeI CATG 3 cut(s) 190, 418, 713
FaqI GGGAC 2 cut(s) 451, 1054
FatI CATG 3 cut(s) 186, 414, 709
FauI CCCGC 7 cut(s) 146, 305, 517, 757, 815, 960, 983
FblI GTMKAC 2 cut(s) 664, 1112
FokI GGATG 1 cut(s) 1157
FriOI GRGCYC 4 cut(s) 252, 396, 552, 898
GlaI GCGC 3 cut(s) 152, 586, 889
GsuI CTGGAG 1 cut(s) 799
HaeIII GGCC 4 cut(s) 250, 316, 722, 734
HapII CCGG 9 cut(s) 95, 221, 265, 296, 698, 706, 719, 789, 851
HgaI GACGC 4 cut(s) 22, 823, 1051, 1057
HhaI GCGC 3 cut(s) 153, 587, 890
Hin1I GRCGYC 6 cut(s) 14, 66, 834, 1043, 1049, 1109
Hin1II CATG 3 cut(s) 190, 418, 713
Hin6I GCGC 3 cut(s) 151, 585, 888
HinP1I GCGC 3 cut(s) 151, 585, 888
HincII GTYRAC 1 cut(s) 1113
HindII GTYRAC 1 cut(s) 1113
HpaII CCGG 9 cut(s) 95, 221, 265, 296, 698, 706, 719, 789, 851
HphI GGTGA 1 cut(s) 1090
Hpy166II GTNNAC 5 cut(s) 665, 859, 861, 1113, 1150
Hpy188III TCNNGA 6 cut(s) 221, 455, 626, 746, 778, 838
Hpy8I GTNNAC 5 cut(s) 665, 859, 861, 1113, 1150
HpyAV CCTTC 5 cut(s) 317, 320, 341, 461, 1026
HpyCH4III ACNGT 4 cut(s) 206, 380, 495, 1154
HpyCH4IV ACGT 2 cut(s) 66, 1109
HpyCH4V TGCA 2 cut(s) 594, 639
HpyF10VI GCNNNNNNNGC 7 cut(s) 99, 108, 591, 640, 715, 964, 1051
HpyF3I CTNAG 1 cut(s) 82
HpySE526I ACGT 2 cut(s) 66, 1109
Hsp92I GRCGYC 6 cut(s) 14, 66, 834, 1043, 1049, 1109
Hsp92II CATG 3 cut(s) 190, 418, 713
HspAI GCGC 3 cut(s) 151, 585, 888
Kpn2I TCCGGA 1 cut(s) 220
KroI GCCGGC 2 cut(s) 705, 718
KroNI GCCGGC 2 cut(s) 707, 720
Kzo9I GATC 4 cut(s) 223, 471, 543, 774
LmnI GCTCC 8 cut(s) 146, 194, 238, 399, 574, 893, 901, 1096
Lsp1109I GCAGC 4 cut(s) 20, 160, 163, 771
LweI GCATC 4 cut(s) 521, 525, 586, 945
MaeII ACGT 2 cut(s) 66, 1109
MalI GATC 4 cut(s) 225, 473, 545, 776
MbiI CCGCTC 3 cut(s) 141, 233, 282
MboI GATC 4 cut(s) 223, 471, 543, 774
MboII GAAGA 4 cut(s) 267, 356, 840, 942
MhlI GDGCHC 5 cut(s) 95, 252, 396, 552, 898
MlyI GAGTC 5 cut(s) 140, 206, 566, 1075, 1108
MmeI TCCRAC 2 cut(s) 168, 421
MroI TCCGGA 1 cut(s) 220
MroNI GCCGGC 2 cut(s) 705, 718
MseI TTAA 2 cut(s) 59, 882
MslI CAYNNNNRTG 1 cut(s) 866
MspA1I CMGCKG 3 cut(s) 173, 463, 819
MspI CCGG 9 cut(s) 95, 221, 265, 296, 698, 706, 719, 789, 851
MspR9I CCNGG 3 cut(s) 95, 296, 789
MvnI CGCG 7 cut(s) 151, 156, 312, 354, 587, 764, 803
MwoI GCNNNNNNNGC 7 cut(s) 99, 108, 591, 640, 715, 964, 1051
NaeI GCCGGC 2 cut(s) 707, 720
NciI CCSGG 3 cut(s) 95, 296, 789
NdeII GATC 4 cut(s) 223, 471, 543, 774
NgoMIV GCCGGC 2 cut(s) 705, 718
NlaIII CATG 3 cut(s) 190, 418, 713
NlaIV GGNNCC 8 cut(s) 196, 249, 250, 251, 269, 395, 616, 995
NmeAIII GCCGAG 1 cut(s) 760
NspI RCATGY 1 cut(s) 418
NspV TTCGAA 2 cut(s) 338, 606
PcsI WCGNNNNNNNCGW 7 cut(s) 69, 123, 495, 539, 552, 1109, 1115
PdiI GCCGGC 2 cut(s) 707, 720
PfeI GAWTC 6 cut(s) 166, 357, 486, 530, 725, 813
PflFI GACNNNGTC 2 cut(s) 1108, 1135
Ple19I CGATCG 1 cut(s) 546
PleI GAGTC 5 cut(s) 140, 206, 565, 1074, 1108
PpsI GAGTC 5 cut(s) 140, 206, 565, 1074, 1108
Psp124BI GAGCTC 2 cut(s) 552, 898
PspN4I GGNNCC 8 cut(s) 196, 249, 250, 251, 269, 395, 616, 995
PspOMI GGGCCC 1 cut(s) 248
PspPI GGNCC 4 cut(s) 248, 249, 314, 994
PstNI CAGNNNCTG 1 cut(s) 176
PsyI GACNNNGTC 2 cut(s) 1108, 1135
PvuI CGATCG 1 cut(s) 546
PvuII CAGCTG 2 cut(s) 173, 463
RsaI GTAC 3 cut(s) 185, 497, 860
RsaNI GTAC 3 cut(s) 184, 496, 859
RseI CAYNNNNRTG 1 cut(s) 866
SacI GAGCTC 2 cut(s) 552, 898
SalI GTCGAC 1 cut(s) 1111
SaqAI TTAA 2 cut(s) 59, 882
Sau3AI GATC 4 cut(s) 223, 471, 543, 774
Sau96I GGNCC 4 cut(s) 248, 249, 314, 994
SchI GAGTC 5 cut(s) 140, 206, 566, 1075, 1108
ScrFI CCNGG 3 cut(s) 95, 296, 789
SduI GDGCHC 5 cut(s) 95, 252, 396, 552, 898
SfaNI GCATC 4 cut(s) 521, 525, 586, 945
SfcI CTRYAG 1 cut(s) 31
SfuI TTCGAA 2 cut(s) 338, 606
SinI GGWCC 1 cut(s) 994
SmiMI CAYNNNNRTG 1 cut(s) 866
SstI GAGCTC 2 cut(s) 552, 898
StyD4I CCNGG 3 cut(s) 93, 294, 787
StyI CCWWGG 1 cut(s) 271
TaaI ACNGT 4 cut(s) 206, 380, 495, 1154
TaiI ACGT 2 cut(s) 69, 1112
TatI WGTACW 2 cut(s) 183, 858
TauI GCSGC 8 cut(s) 45, 105, 156, 572, 795, 822, 1054, 1126
TfiI GAWTC 6 cut(s) 166, 357, 486, 530, 725, 813
Tru1I TTAA 2 cut(s) 59, 882
Tru9I TTAA 2 cut(s) 59, 882
TscAI CASTG 4 cut(s) 90, 112, 587, 1159
TseI GCWGC 4 cut(s) 8, 173, 176, 784
TspDTI ATGAA 1 cut(s) 726
TspGWI ACGGA 2 cut(s) 498, 878
TspRI CASTG 4 cut(s) 90, 112, 587, 1159
Tth111I GACNNNGTC 2 cut(s) 1108, 1135
VpaK11BI GGWCC 1 cut(s) 994
XceI RCATGY 1 cut(s) 418
XmiI GTMKAC 2 cut(s) 664, 1112
ZraI GACGTC 2 cut(s) 67, 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.