Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001214

Physical Location & Seq

Genomic Coordinates Forward (+)

948429 .. 948959

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1012900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTTTTCTCTGGACTCCGTCCTCTGGTGCCCTCACTGCGAAACCGGCTTCCTCGAAGAGATCGAGACGATGCCACAGCCGCTACTGCAGCCGAACCATTTCCGCCATAGATTCCTGTCCTTCCACCGCCATGAGGAAGAACGGGGCCAAAACCCGACTCCGACCTTCCGCCGGGTACAACGGGCCTCCGGCGACGGGTCTTCTTTATTCAACCTGGTCATCGTCTTACGTGGCACCGAGGCTGATACTGAGTCCAACACATTCGAACTCTACTATAATGACGTCGCGGGGTCGGGGCTCCGACCATTTCTGCCCACCATGTCCGACCTTTTAATGGGTTCGGGCTTCGACCACTTCTTTGAACAGCTCTCCCAGATTGAAATCAACGGTTTGGGCCGACCTGAAAACCTGCCTTCGTCTAAATCCACTGTGAAATCTATGCCCGTTATTCAAATCGCCGATACCCACGTCGGGTCGGACTCGCACTGCGCCGTTTGCAAAGAAGCATTTGAACTCGGGTCAGAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010035 GO:0010154 GO:0010200 GO:0010243 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0097305 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1117 zf-RING_2 zinc_ribbon_9

Protein Analysis

177

Amino Acids

19.73

Weight (kDa)

5.06

Isoelectric Point (pI)

59.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39720 AT2G39720 AT3G46620 AT5G59550 AT5G59550
fragaria_vesca	FvH4_3g36860 FvH4_6g13340 FvH4_7g22850
malus_domestica	MD01G1136700.v1.1 MD03G1087100.v1.1 MD04G1131800.v1.1 MD07G1201700.v1.1 MD10G1074300.v1.1 MD11G1012900.v1.1 MD11G1096200.v1.1 MD12G1144900.v1.1
prunus_persica	Prupe.2G238300_v2.0.a1 Prupe.6G071800_v2.0.a1 Prupe.6G258400_v2.0.a1
pyrus_communis	pycom01g15740 pycom03g06910 pycom04g11990 pycom07g18870 pycom11g08150 pycom12g13930
rosa_chinensis	RchiOBHm_Chr1g0368011 RchiOBHm_Chr3g0466231 RchiOBHm_Chr5g0066071
rosa_laevigata	RLG00000024595 RLG00000027247 RLG00000035839
rosa_multiflora	Rmu_co8242689.1_g000001 Rmu_co8418295.1_g000001 Rmu_sc0000350.1_g000012 Rmu_sc0002406.1_g000005 Rmu_sc0005240.1_g000003 Rmu_sc0005240.1_g000004
rosa_roxburghii	Rroxscaffold_1G00014940 Rroxscaffold_4G00288940 Rroxscaffold_6G00414710
rosa_rugosa	Rorug01G0338400 Rorug03G0080500 Rorug05G0376200
rosa_samantha	Rh1AG345200 Rh1BG307500 Rh1CG323100 Rh1DG339600 Rh3BG147700 Rh3DG148400 Rh5AG434600 Rh5BG450900 Rh5CG473200 Rh5DG464500
rosa_wichuraiana	Rw1G030720 Rw3G011940 Rw5G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	285
Acc36I	ACCTGC	1 cut(s)	417
AccB1I	GGYRCC	2 cut(s)	27, 233
AccII	CGCG	1 cut(s)	287
AciI	CCGC	5 cut(s)	80, 103, 127, 169, 287
AcyI	GRCGYC	1 cut(s)	282
AfaI	GTAC	1 cut(s)	177
AfiI	CCNNNNNNNGG	6 cut(s)	24, 133, 171, 195, 334, 471
AgsI	TTSAA	5 cut(s)	211, 362, 380, 452, 512
AjiI	CACGTC	1 cut(s)	469
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	1 cut(s)	367
AluI	AGCT	1 cut(s)	367
Alw26I	GTCTC	1 cut(s)	59
Ama87I	CYCGRG	1 cut(s)	515
AoxI	GGCC	4 cut(s)	145, 183, 394, 525
ApeKI	GCWGC	1 cut(s)	88
ArsI	GACNNNNNNTTYG	2 cut(s)	341, 373
Asp700I	GAANNNNTTC	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	491
AspS9I	GGNCC	3 cut(s)	145, 183, 394
AsuC2I	CCSGG	1 cut(s)	173
AsuII	TTCGAA	1 cut(s)	264
AvaI	CYCGRG	1 cut(s)	515
BaeGI	GKGCMC	1 cut(s)	32
BaeI	ACNNNNGTAYC	2 cut(s)	453, 486
BanI	GGYRCC	2 cut(s)	27, 233
BanII	GRGCYC	1 cut(s)	300
BbsI	GAAGAC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	100
BceAI	ACGGC	1 cut(s)	476
BciT130I	CCWGG	1 cut(s)	215
BcnI	CCSGG	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	417
BisI	GCNGC	2 cut(s)	80, 89
BlsI	GCNGC	2 cut(s)	81, 90
Bme1390I	CCNGG	2 cut(s)	173, 215
BmeT110I	CYCGRG	1 cut(s)	515
BmgBI	CACGTC	1 cut(s)	469
BmgT120I	GGNCC	3 cut(s)	145, 183, 394
BmiI	GGNNCC	4 cut(s)	29, 146, 235, 299
BmrFI	CCNGG	2 cut(s)	173, 215
BmsI	GCATC	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	192
Bpu14I	TTCGAA	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	173
BsaAI	YACGTR	1 cut(s)	230
BsaBI	GATNNNNATC	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	6 cut(s)	24, 133, 171, 195, 334, 471
Bse118I	RCCGGY	1 cut(s)	44
Bse8I	GATNNNNATC	1 cut(s)	380
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	1 cut(s)	237
BseJI	GATNNNNATC	1 cut(s)	380
BseLI	CCNNNNNNNGG	6 cut(s)	24, 133, 171, 195, 334, 471
BseMII	CTCAG	1 cut(s)	240
BseSI	GKGCMC	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	100
Bsh1236I	CGCG	1 cut(s)	287
BshFI	GGCC	4 cut(s)	147, 185, 396, 527
BshNI	GGYRCC	2 cut(s)	27, 233
BsiHKCI	CYCGRG	1 cut(s)	515
BsiSI	CCGG	3 cut(s)	45, 172, 189
BslI	CCNNNNNNNGG	6 cut(s)	24, 133, 171, 195, 334, 471
BsmAI	GTCTC	1 cut(s)	59
BsmBI	CGTCTC	1 cut(s)	59
BsnI	GGCC	4 cut(s)	147, 185, 396, 527
BsoBI	CYCGRG	1 cut(s)	515
Bsp119I	TTCGAA	1 cut(s)	264
Bsp1286I	GDGCHC	2 cut(s)	32, 300
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	5 cut(s)	80, 103, 127, 169, 287
BspANI	GGCC	4 cut(s)	147, 185, 396, 527
BspCNI	CTCAG	1 cut(s)	241
BspFNI	CGCG	1 cut(s)	287
BspLI	GGNNCC	4 cut(s)	29, 146, 235, 299
BspMAI	CTGCAG	1 cut(s)	90
BspMI	ACCTGC	1 cut(s)	417
BspT104I	TTCGAA	1 cut(s)	264
BspT107I	GGYRCC	2 cut(s)	27, 233
BsrFI	RCCGGY	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	1 cut(s)	60
BssNI	GRCGYC	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	2 cut(s)	389, 430
Bst6I	CTCTTC	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	282
BstBAI	YACGTR	1 cut(s)	230
BstBI	TTCGAA	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	249
BstFNI	CGCG	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	491
BstKTI	GATC	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	6 cut(s)	36, 45, 79, 85, 88, 495
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	2 cut(s)	171, 213
BstSFI	CTRYAG	1 cut(s)	86
BstSLI	GKGCMC	1 cut(s)	32
BstUI	CGCG	1 cut(s)	287
BstV1I	GCAGC	1 cut(s)	100
BstV2I	GAAGAC	1 cut(s)	192
BsuRI	GGCC	4 cut(s)	147, 185, 396, 527
BtrI	CACGTC	1 cut(s)	469
BtsI	GCAGTG	2 cut(s)	34, 484
BtsIMutI	CAGTG	3 cut(s)	34, 426, 484
BveI	ACCTGC	1 cut(s)	417
CfoI	GCGC	1 cut(s)	491
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	3 cut(s)	145, 183, 394
CsiI	ACCWGGT	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	176
CviAII	CATG	2 cut(s)	131, 319
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
EciI	GGCGGA	2 cut(s)	92, 158
Eco147I	AGGCCT	1 cut(s)	527
Eco24I	GRGCYC	1 cut(s)	300
Eco88I	CYCGRG	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	300
Esp3I	CGTCTC	1 cut(s)	59
FaeI	CATG	2 cut(s)	134, 322
FaiI	YATR	5 cut(s)	108, 132, 276, 320, 440
FatI	CATG	2 cut(s)	130, 318
FauI	CCCGC	1 cut(s)	280
Fnu4HI	GCNGC	2 cut(s)	80, 89
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	2 cut(s)	80, 89
GlaI	GCGC	1 cut(s)	490
GluI	GCNGC	2 cut(s)	80, 89
HaeIII	GGCC	4 cut(s)	147, 185, 396, 527
HapII	CCGG	3 cut(s)	45, 172, 189
HhaI	GCGC	1 cut(s)	491
Hin1I	GRCGYC	1 cut(s)	282
Hin1II	CATG	2 cut(s)	134, 322
Hin6I	GCGC	1 cut(s)	489
HinP1I	GCGC	1 cut(s)	489
HinfI	GANTC	5 cut(s)	14, 111, 157, 251, 479
HpaII	CCGG	3 cut(s)	45, 172, 189
Hpy188I	TCNGA	5 cut(s)	162, 302, 325, 478, 523
Hpy188III	TCNNGA	2 cut(s)	11, 64
Hpy99I	CGWCG	3 cut(s)	197, 287, 473
HpyAV	CCTTC	3 cut(s)	130, 175, 423
HpyCH4III	ACNGT	2 cut(s)	389, 430
HpyCH4IV	ACGT	3 cut(s)	229, 282, 468
HpyCH4V	TGCA	2 cut(s)	88, 498
HpyF10VI	GCNNNNNNNGC	6 cut(s)	36, 45, 79, 85, 88, 495
HpyF3I	CTNAG	1 cut(s)	249
HpySE526I	ACGT	3 cut(s)	229, 282, 468
Hsp92I	GRCGYC	1 cut(s)	282
Hsp92II	CATG	2 cut(s)	134, 322
HspAI	GCGC	1 cut(s)	489
Kzo9I	GATC	1 cut(s)	60
LmnI	GCTCC	1 cut(s)	303
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	1 cut(s)	60
MabI	ACCWGGT	1 cut(s)	213
MaeII	ACGT	3 cut(s)	229, 282, 468
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	3 cut(s)	68, 149, 192
MhlI	GDGCHC	2 cut(s)	32, 300
MlyI	GAGTC	4 cut(s)	8, 151, 260, 473
MmeI	TCCRAC	5 cut(s)	185, 279, 325, 348, 456
MnlI	CCTC	7 cut(s)	32, 42, 62, 127, 196, 232, 517
MroXI	GAANNNNTTC	1 cut(s)	98
MseI	TTAA	1 cut(s)	332
MslI	CAYNNNNRTG	1 cut(s)	129
MspI	CCGG	3 cut(s)	45, 172, 189
MspR9I	CCNGG	2 cut(s)	173, 215
MvaI	CCWGG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	287
MwoI	GCNNNNNNNGC	6 cut(s)	36, 45, 79, 85, 88, 495
NciI	CCSGG	1 cut(s)	173
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	2 cut(s)	134, 322
NlaIV	GGNNCC	4 cut(s)	29, 146, 235, 299
NspV	TTCGAA	1 cut(s)	264
PceI	AGGCCT	1 cut(s)	527
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	111
PflFI	GACNNNGTC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	81, 90
PleI	GAGTC	4 cut(s)	8, 151, 259, 473
PpsI	GAGTC	4 cut(s)	8, 151, 259, 473
Ppu21I	YACGTR	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	4 cut(s)	29, 146, 235, 299
PspPI	GGNCC	3 cut(s)	145, 183, 394
PstI	CTGCAG	1 cut(s)	90
PsyI	GACNNNGTC	1 cut(s)	17
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	2 cut(s)	80, 89
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	3 cut(s)	145, 183, 394
SchI	GAGTC	4 cut(s)	8, 151, 260, 473
ScrFI	CCNGG	2 cut(s)	173, 215
SduI	GDGCHC	2 cut(s)	32, 300
SetI	ASST	9 cut(s)	167, 216, 232, 285, 330, 369, 403, 411, 471
SexAI	ACCWGGT	1 cut(s)	213
SfaNI	GCATC	1 cut(s)	60
SfcI	CTRYAG	1 cut(s)	86
SfuI	TTCGAA	1 cut(s)	264
SmiMI	CAYNNNNRTG	1 cut(s)	129
SseBI	AGGCCT	1 cut(s)	527
SsiI	CCGC	5 cut(s)	80, 103, 127, 169, 287
StuI	AGGCCT	1 cut(s)	527
StyD4I	CCNGG	2 cut(s)	171, 213
TaaI	ACNGT	2 cut(s)	389, 430
TaiI	ACGT	3 cut(s)	232, 285, 471
TaqI	TCGA	4 cut(s)	54, 63, 264, 348
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	111
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TscAI	CASTG	3 cut(s)	41, 433, 491
TseI	GCWGC	1 cut(s)	88
TspGWI	ACGGA	1 cut(s)	7
TspRI	CASTG	3 cut(s)	41, 433, 491
Tth111I	GACNNNGTC	1 cut(s)	17
XmnI	GAANNNNTTC	1 cut(s)	98
ZraI	GACGTC	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.