Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001214

Physical Location & Seq

Genomic Coordinates Reverse (-)

56517374 .. 56519898

Gene Structure 2525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG339600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGTCCGCAGCGACGACGTCATGTTACTGCTACAGATGTAGCAGGTTCATTAGGGCTTTCACCGGCACCGGCAACTCACCGGTGGTGTGTCCGGACTGCGGCAGTGGATTTGTGGAAGAGCTCGGCAACCCGGCCCGCTCCGTCCACGTGGATTTGCGCCGTTCCGCTGCTGCGATGTATATGATCGGAGCCAACAACCGCTTCGGTTCCAATCATGATCTCCGACGACCTCGCAGAAACAACAACGGCGGTGGCGGTGACCGATCGGTGTTCAATCCGGTCATCGTGGTGCGCGGAACTGAGGCGGGGAATGAGGGAAGAGGATTCGAGCTGTTTTATGACGATGGATCCGGGTCGGGTCTTCGGCCCTTGCCGAATAACATGTCCGAGTTTTTTTTCGGGTCCGGGTTCGACCGCCTGTTGAGTCAGCTTTCGCAGATCGATTTGAACGGAATCGGACGGTACGATCAGCGGCCGGCGGCGAAGTCGGCGGTGGAGTCGTTGCCGACGATCGAGCTGGACGATTCGCACGTGGCGGAGGAGTCTCACTGCGCCGTGTGCAAAGAGCAATTTGAATTGGGAAATGAAGTTCGAGAGATGCCTTGCAAGCATATATACCACTCCGATTGCATCCTGCCGTGGCTTGCGCAGCGGAATTCGTGTCCGGTGTGCCGGCAAGAGCTGCCGGTGGACTCTCCGGCGGTGGTGAATCCGGCGGCGGCTCTGAGTGAGGGCGAGAACGCCGCGCTGACGATCTGGAGGCTTCCGGGAGGCGGATTCGCGGTGGGGAGGTTTGCCGCCGGCGGGAGAAGAGCCGGCGGAGGCGATAGGGAGCTTCCGGTGGTTTATACGGAGATGGACGGCGGGTTTAACGGCGGCGCGCCGAGGAGGGTTTCGTGGTCGAGGAGCGGCGGGAGAGGAAGACGCAGAGGTGGAGTCAGGCGGTTTGTTAGAGGCTTGTTCTCGTGTTTCCACGGTGGCAGGGCAGTTGCGCCTCGGTCGTCTTCTCCTCCGAGTTCCTTGCCGGAAGTGAGGCCTGCGCCGATGAACGACAGGAGGGTGAGGCCATCCAATTCGGAGAGGCCAGCTTCCACGGCCCGGACGCACAGGACTTGGTCTATGGAGGTTAACAATGGGGTTGTGATATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051603 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1117 zf-RING_2 zinc_ribbon_9

Protein Analysis

383

Amino Acids

41.59

Weight (kDa)

9.22

Isoelectric Point (pI)

69.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	7 - 41	8.5e-10	zinc-ribbon
zf-rbx1	PF12678	181 - 225	2.5e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	183 - 225	3e-13	Ring finger domain
zf-C3HC4_2	PF13923	184 - 224	7e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	184 - 211	1.1e-07	RING-like zinc finger
zf-C3HC4	PF00097	184 - 224	8.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	184 - 222	1.4e-06	RING-type zinc-finger
DUF1117	PF06547	250 - 339	2.4e-32	Protein of unknown function (DUF1117)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39720 AT2G39720 AT3G46620 AT5G59550 AT5G59550
fragaria_vesca	FvH4_3g36860 FvH4_6g13340 FvH4_7g22850
malus_domestica	MD01G1136700.v1.1 MD03G1087100.v1.1 MD04G1131800.v1.1 MD07G1201700.v1.1 MD10G1074300.v1.1 MD11G1012900.v1.1 MD11G1096200.v1.1 MD12G1144900.v1.1
prunus_persica	Prupe.2G238300_v2.0.a1 Prupe.6G071800_v2.0.a1 Prupe.6G258400_v2.0.a1
pyrus_communis	pycom01g15740 pycom03g06910 pycom04g11990 pycom07g18870 pycom11g08150 pycom12g13930
rosa_chinensis	RchiOBHm_Chr1g0368011 RchiOBHm_Chr3g0466231 RchiOBHm_Chr5g0066071
rosa_laevigata	RLG00000024595 RLG00000027247 RLG00000035839
rosa_multiflora	Rmu_co8242689.1_g000001 Rmu_co8418295.1_g000001 Rmu_sc0000350.1_g000012 Rmu_sc0002406.1_g000005 Rmu_sc0005240.1_g000003 Rmu_sc0005240.1_g000004
rosa_roxburghii	Rroxscaffold_1G00014940 Rroxscaffold_4G00288940 Rroxscaffold_6G00414710
rosa_rugosa	Rorug01G0338400 Rorug03G0080500 Rorug05G0376200
rosa_samantha	Rh1AG345200 Rh1BG307500 Rh1CG323100 Rh1DG339600 Rh3BG147700 Rh3DG148400 Rh5AG434600 Rh5BG450900 Rh5CG473200 Rh5DG464500
rosa_wichuraiana	Rw1G030720 Rw3G011940 Rw5G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	20
Acc16I	TGCGCA	1 cut(s)	648
Acc36I	ACCTGC	1 cut(s)	33
AccB1I	GGYRCC	1 cut(s)	65
AccBSI	CCGCTC	2 cut(s)	138, 909
AccII	CGCG	4 cut(s)	294, 746, 782, 881
AccIII	TCCGGA	1 cut(s)	91
AclWI	GGATC	2 cut(s)	342, 355
AcoI	YGGCCR	1 cut(s)	473
AcsI	RAATTY	1 cut(s)	655
AcvI	CACGTG	2 cut(s)	148, 532
AcyI	GRCGYC	1 cut(s)	17
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	4 cut(s)	98, 773, 804, 1098
AflIII	ACRYGT	1 cut(s)	381
AgeI	ACCGGT	1 cut(s)	79
AgsI	TTSAA	3 cut(s)	274, 448, 575
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AloI	GAACNNNNNNTCC	2 cut(s)	573, 605
AluBI	AGCT	7 cut(s)	121, 331, 430, 517, 682, 835, 1088
AluI	AGCT	7 cut(s)	121, 331, 430, 517, 682, 835, 1088
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	549
AlwI	GGATC	2 cut(s)	342, 355
Aor13HI	TCCGGA	1 cut(s)	91
AoxI	GGCC	7 cut(s)	132, 365, 473, 1034, 1064, 1082, 1095
ApeKI	GCWGC	5 cut(s)	8, 167, 170, 649, 682
ApoI	RAATTY	1 cut(s)	655
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
AscI	GGCGCGCC	1 cut(s)	879
AsiGI	ACCGGT	1 cut(s)	79
AspLEI	GCGC	9 cut(s)	159, 294, 554, 649, 748, 881, 883, 994, 1042
AspS9I	GGNCC	4 cut(s)	133, 366, 402, 1096
AsuC2I	CCSGG	5 cut(s)	131, 352, 406, 768, 1099
AsuHPI	GGTGA	5 cut(s)	52, 69, 269, 718, 1072
AvaII	GGWCC	1 cut(s)	402
BamHI	GGATCC	1 cut(s)	347
BanI	GGYRCC	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	123
BauI	CACGAG	1 cut(s)	964
BbrPI	CACGTG	2 cut(s)	148, 532
BbsI	GAAGAC	3 cut(s)	353, 928, 996
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	5 cut(s)	20, 154, 157, 661, 669
BccI	CCATC	3 cut(s)	338, 850, 1075
BceAI	ACGGC	7 cut(s)	144, 262, 539, 622, 877, 889, 1110
BcgI	CGANNNNNNTGC	2 cut(s)	1003, 1037
BcnI	CCSGG	5 cut(s)	131, 352, 406, 768, 1099
BcoDI	GTCTC	1 cut(s)	549
BfmI	CTRYAG	1 cut(s)	31
BfuAI	ACCTGC	1 cut(s)	33
Bme1390I	CCNGG	5 cut(s)	131, 352, 406, 768, 1099
Bme18I	GGWCC	1 cut(s)	402
BmgT120I	GGNCC	4 cut(s)	133, 366, 402, 1096
BmiI	GGNNCC	5 cut(s)	67, 190, 208, 349, 403
BmrFI	CCNGG	5 cut(s)	131, 352, 406, 768, 1099
BmsI	GCATC	2 cut(s)	588, 639
BpiI	GAAGAC	3 cut(s)	353, 928, 996
BpmI	CTGGAG	1 cut(s)	778
BpuMI	CCSGG	5 cut(s)	131, 352, 406, 768, 1099
Bsa29I	ATCGAT	1 cut(s)	441
BsaAI	YACGTR	2 cut(s)	148, 532
BsaHI	GRCGYC	1 cut(s)	17
BsaJI	CCNNGG	5 cut(s)	638, 884, 973, 995, 1092
BsaWI	WCCGGW	5 cut(s)	79, 91, 277, 664, 838
Bsc4I	CCNNNNNNNGG	4 cut(s)	98, 773, 804, 1098
Bse118I	RCCGGY	8 cut(s)	62, 68, 79, 475, 672, 685, 800, 815
BseAI	TCCGGA	1 cut(s)	91
BseCI	ATCGAT	1 cut(s)	441
BseDI	CCNNGG	5 cut(s)	638, 884, 973, 995, 1092
BseGI	GGATG	2 cut(s)	630, 1067
BseLI	CCNNNNNNNGG	4 cut(s)	98, 773, 804, 1098
BseMII	CTCAG	2 cut(s)	291, 716
BsePI	GCGCGC	1 cut(s)	879
BseRI	GAGGAG	4 cut(s)	554, 901, 919, 999
BseX3I	CGGCCG	1 cut(s)	473
BseXI	GCAGC	5 cut(s)	20, 154, 157, 661, 669
Bsh1236I	CGCG	4 cut(s)	294, 746, 782, 881
Bsh1285I	CGRYCG	5 cut(s)	266, 415, 476, 513, 1001
BshFI	GGCC	7 cut(s)	134, 367, 475, 1036, 1066, 1084, 1097
BshNI	GGYRCC	1 cut(s)	65
BshTI	ACCGGT	1 cut(s)	79
BshVI	ATCGAT	1 cut(s)	441
BsiEI	CGRYCG	5 cut(s)	266, 415, 476, 513, 1001
BsiHKAI	GWGCWC	1 cut(s)	123
BslI	CCNNNNNNNGG	4 cut(s)	98, 773, 804, 1098
BsmAI	GTCTC	1 cut(s)	549
BsnI	GGCC	7 cut(s)	134, 367, 475, 1036, 1066, 1084, 1097
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp13I	TCCGGA	1 cut(s)	91
Bsp143I	GATC	8 cut(s)	183, 217, 263, 347, 438, 466, 510, 753
BspANI	GGCC	7 cut(s)	134, 367, 475, 1036, 1066, 1084, 1097
BspCNI	CTCAG	2 cut(s)	292, 717
BspDI	ATCGAT	1 cut(s)	441
BspEI	TCCGGA	1 cut(s)	91
BspFNI	CGCG	4 cut(s)	294, 746, 782, 881
BspHI	TCATGA	1 cut(s)	214
BspLI	GGNNCC	5 cut(s)	67, 190, 208, 349, 403
BspMI	ACCTGC	1 cut(s)	33
BspPI	GGATC	2 cut(s)	342, 355
BspQI	GCTCTTC	2 cut(s)	111, 805
BspT107I	GGYRCC	1 cut(s)	65
BsrBI	CCGCTC	2 cut(s)	138, 909
BsrFI	RCCGGY	8 cut(s)	62, 68, 79, 475, 672, 685, 800, 815
BssAI	RCCGGY	8 cut(s)	62, 68, 79, 475, 672, 685, 800, 815
BssECI	CCNNGG	5 cut(s)	638, 884, 973, 995, 1092
BssHII	GCGCGC	1 cut(s)	879
BssMI	GATC	8 cut(s)	183, 217, 263, 347, 438, 466, 510, 753
BssNI	GRCGYC	1 cut(s)	17
BssSI	CACGAG	1 cut(s)	964
Bst2BI	CACGAG	1 cut(s)	964
Bst4CI	ACNGT	2 cut(s)	462, 977
Bst6I	CTCTTC	3 cut(s)	111, 313, 805
BstACI	GRCGYC	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	682
BstBAI	YACGTR	2 cut(s)	148, 532
BstDEI	CTNAG	2 cut(s)	300, 725
BstDSI	CCRYGG	3 cut(s)	638, 973, 1092
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	2 cut(s)	630, 1067
BstFNI	CGCG	4 cut(s)	294, 746, 782, 881
BstHHI	GCGC	9 cut(s)	159, 294, 554, 649, 748, 881, 883, 994, 1042
BstKTI	GATC	8 cut(s)	186, 220, 266, 350, 441, 469, 513, 756
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	8 cut(s)	183, 217, 263, 347, 438, 466, 510, 753
BstMCI	CGRYCG	5 cut(s)	266, 415, 476, 513, 1001
BstMWI	GCNNNNNNNGC	6 cut(s)	488, 558, 607, 649, 682, 1094
BstNSI	RCATGY	1 cut(s)	385
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	5 cut(s)	129, 350, 404, 766, 1097
BstSFI	CTRYAG	1 cut(s)	31
BstUI	CGCG	4 cut(s)	294, 746, 782, 881
BstV1I	GCAGC	5 cut(s)	20, 154, 157, 661, 669
BstV2I	GAAGAC	3 cut(s)	353, 928, 996
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BstZI	CGGCCG	1 cut(s)	473
Bsu15I	ATCGAT	1 cut(s)	441
BsuRI	GGCC	7 cut(s)	134, 367, 475, 1036, 1066, 1084, 1097
BsuTUI	ATCGAT	1 cut(s)	441
BtgI	CCRYGG	3 cut(s)	638, 973, 1092
BtgZI	GCGATG	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	630, 1067
BtsI	GCAGTG	2 cut(s)	109, 547
BtsIMutI	CAGTG	2 cut(s)	109, 547
BveI	ACCTGC	1 cut(s)	33
CciI	TCATGA	1 cut(s)	214
CfoI	GCGC	9 cut(s)	159, 294, 554, 649, 748, 881, 883, 994, 1042
Cfr10I	RCCGGY	8 cut(s)	62, 68, 79, 475, 672, 685, 800, 815
Cfr13I	GGNCC	4 cut(s)	133, 366, 402, 1096
ClaI	ATCGAT	1 cut(s)	441
CseI	GACGC	2 cut(s)	933, 1111
Csp6I	GTAC	1 cut(s)	463
CspAI	ACCGGT	1 cut(s)	79
CspCI	CAANNNNNGTGG	4 cut(s)	232, 267, 608, 643
CviAII	CATG	3 cut(s)	21, 215, 382
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	2 cut(s)	300, 725
DpnI	GATC	8 cut(s)	185, 219, 265, 349, 440, 468, 512, 755
DpnII	GATC	8 cut(s)	183, 217, 263, 347, 438, 466, 510, 753
EaeI	YGGCCR	1 cut(s)	473
EagI	CGGCCG	1 cut(s)	473
Eam1104I	CTCTTC	3 cut(s)	111, 313, 805
EarI	CTCTTC	3 cut(s)	111, 313, 805
EciI	GGCGGA	3 cut(s)	551, 789, 834
Ecl136II	GAGCTC	1 cut(s)	121
EclXI	CGGCCG	1 cut(s)	473
Eco147I	AGGCCT	1 cut(s)	1036
Eco24I	GRGCYC	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	402
Eco52I	CGGCCG	1 cut(s)	473
Eco53kI	GAGCTC	1 cut(s)	121
Eco72I	CACGTG	2 cut(s)	148, 532
Eco91I	GGTNACC	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	121
EcoO65I	GGTNACC	1 cut(s)	257
EcoRI	GAATTC	1 cut(s)	655
EcoT38I	GRGCYC	1 cut(s)	123
FaeI	CATG	3 cut(s)	24, 218, 385
FatI	CATG	3 cut(s)	20, 214, 381
FauI	CCCGC	5 cut(s)	143, 298, 797, 857, 905
FokI	GGATG	2 cut(s)	617, 1054
FriOI	GRGCYC	1 cut(s)	123
FspI	TGCGCA	1 cut(s)	648
GlaI	GCGC	9 cut(s)	158, 293, 553, 648, 747, 880, 882, 993, 1041
GsuI	CTGGAG	1 cut(s)	778
HaeIII	GGCC	7 cut(s)	134, 367, 475, 1036, 1066, 1084, 1097
HgaI	GACGC	2 cut(s)	933, 1111
HhaI	GCGC	9 cut(s)	159, 294, 554, 649, 748, 881, 883, 994, 1042
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	3 cut(s)	24, 218, 385
Hin6I	GCGC	9 cut(s)	157, 292, 552, 647, 746, 879, 881, 992, 1040
HinP1I	GCGC	9 cut(s)	157, 292, 552, 647, 746, 879, 881, 992, 1040
HincII	GTYRAC	1 cut(s)	1129
HindII	GTYRAC	1 cut(s)	1129
HpaI	GTTAAC	1 cut(s)	1129
HphI	GGTGA	5 cut(s)	52, 69, 269, 718, 1072
Hpy166II	GTNNAC	3 cut(s)	145, 691, 1129
Hpy188I	TCNGA	8 cut(s)	188, 224, 388, 458, 625, 726, 1014, 1078
Hpy188III	TCNNGA	4 cut(s)	92, 215, 593, 757
Hpy8I	GTNNAC	3 cut(s)	145, 691, 1129
Hpy99I	CGWCG	4 cut(s)	16, 19, 228, 511
HpyCH4III	ACNGT	2 cut(s)	462, 977
HpyCH4IV	ACGT	3 cut(s)	17, 147, 531
HpyCH4V	TGCA	3 cut(s)	561, 606, 630
HpyF10VI	GCNNNNNNNGC	6 cut(s)	488, 558, 607, 649, 682, 1094
HpyF3I	CTNAG	2 cut(s)	300, 725
HpySE526I	ACGT	3 cut(s)	17, 147, 531
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	3 cut(s)	24, 218, 385
HspAI	GCGC	9 cut(s)	157, 292, 552, 647, 746, 879, 881, 992, 1040
Kpn2I	TCCGGA	1 cut(s)	91
KroI	GCCGGC	4 cut(s)	475, 672, 800, 815
KroNI	GCCGGC	4 cut(s)	477, 674, 802, 817
KspAI	GTTAAC	1 cut(s)	1129
Kzo9I	GATC	8 cut(s)	183, 217, 263, 347, 438, 466, 510, 753
LguI	GCTCTTC	2 cut(s)	111, 805
LmnI	GCTCC	4 cut(s)	143, 188, 832, 906
Lsp1109I	GCAGC	5 cut(s)	20, 154, 157, 661, 669
LweI	GCATC	2 cut(s)	588, 639
MaeII	ACGT	3 cut(s)	17, 147, 531
MaeIII	GTNAC	2 cut(s)	23, 257
MalI	GATC	8 cut(s)	185, 219, 265, 349, 440, 468, 512, 755
MbiI	CCGCTC	2 cut(s)	138, 909
MboI	GATC	8 cut(s)	183, 217, 263, 347, 438, 466, 510, 753
MboII	GAAGA	6 cut(s)	128, 330, 353, 822, 933, 996
MflI	RGATCY	1 cut(s)	347
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	4 cut(s)	569, 575, 655, 1072
MlyI	GAGTC	5 cut(s)	433, 506, 551, 686, 945
MmeI	TCCRAC	1 cut(s)	247
MreI	CGCCGGCG	1 cut(s)	800
MroI	TCCGGA	1 cut(s)	91
MroNI	GCCGGC	4 cut(s)	475, 672, 800, 815
MseI	TTAA	2 cut(s)	870, 1128
MslI	CAYNNNNRTG	1 cut(s)	287
MspA1I	CMGCKG	3 cut(s)	167, 472, 652
MspR9I	CCNGG	5 cut(s)	131, 352, 406, 768, 1099
MvnI	CGCG	4 cut(s)	294, 746, 782, 881
MwoI	GCNNNNNNNGC	6 cut(s)	488, 558, 607, 649, 682, 1094
NaeI	GCCGGC	4 cut(s)	477, 674, 802, 817
NciI	CCSGG	5 cut(s)	131, 352, 406, 768, 1099
NdeII	GATC	8 cut(s)	183, 217, 263, 347, 438, 466, 510, 753
NgoMIV	GCCGGC	4 cut(s)	475, 672, 800, 815
NlaIII	CATG	3 cut(s)	24, 218, 385
NlaIV	GGNNCC	5 cut(s)	67, 190, 208, 349, 403
NmeAIII	GCCGAG	2 cut(s)	102, 909
NmuCI	GTSAC	1 cut(s)	257
NsbI	TGCGCA	1 cut(s)	648
NspI	RCATGY	1 cut(s)	385
PagI	TCATGA	1 cut(s)	214
PalAI	GGCGCGCC	1 cut(s)	879
PauI	GCGCGC	1 cut(s)	879
PceI	AGGCCT	1 cut(s)	1036
PciI	ACATGT	1 cut(s)	381
PciSI	GCTCTTC	2 cut(s)	111, 805
PcsI	WCGNNNNNNNCGW	4 cut(s)	462, 506, 519, 528
PdiI	GCCGGC	4 cut(s)	477, 674, 802, 817
PfeI	GAWTC	5 cut(s)	324, 453, 524, 709, 777
PflFI	GACNNNGTC	2 cut(s)	16, 1114
PfoI	TCCNGGA	1 cut(s)	766
PinAI	ACCGGT	1 cut(s)	79
Ple19I	CGATCG	2 cut(s)	266, 513
PleI	GAGTC	5 cut(s)	432, 505, 550, 686, 944
PmaCI	CACGTG	2 cut(s)	148, 532
PmlI	CACGTG	2 cut(s)	148, 532
PpsI	GAGTC	5 cut(s)	432, 505, 550, 686, 944
Ppu21I	YACGTR	2 cut(s)	148, 532
PscI	ACATGT	1 cut(s)	381
Psp124BI	GAGCTC	1 cut(s)	123
PspCI	CACGTG	2 cut(s)	148, 532
PspEI	GGTNACC	1 cut(s)	257
PspN4I	GGNNCC	5 cut(s)	67, 190, 208, 349, 403
PspPI	GGNCC	4 cut(s)	133, 366, 402, 1096
PsuI	RGATCY	1 cut(s)	347
PsyI	GACNNNGTC	2 cut(s)	16, 1114
PteI	GCGCGC	1 cut(s)	879
PvuI	CGATCG	2 cut(s)	266, 513
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
RseI	CAYNNNNRTG	1 cut(s)	287
SacI	GAGCTC	1 cut(s)	123
SapI	GCTCTTC	2 cut(s)	111, 805
SaqAI	TTAA	2 cut(s)	870, 1128
Sau3AI	GATC	8 cut(s)	183, 217, 263, 347, 438, 466, 510, 753
Sau96I	GGNCC	4 cut(s)	133, 366, 402, 1096
SchI	GAGTC	5 cut(s)	433, 506, 551, 686, 945
ScrFI	CCNGG	5 cut(s)	131, 352, 406, 768, 1099
SduI	GDGCHC	1 cut(s)	123
SfaNI	GCATC	2 cut(s)	588, 639
SfcI	CTRYAG	1 cut(s)	31
SgrAI	CRCCGGYG	2 cut(s)	79, 800
SgsI	GGCGCGCC	1 cut(s)	879
SinI	GGWCC	1 cut(s)	402
SmiMI	CAYNNNNRTG	1 cut(s)	287
Sse9I	AATT	4 cut(s)	569, 575, 655, 1072
SseBI	AGGCCT	1 cut(s)	1036
SstI	GAGCTC	1 cut(s)	123
StuI	AGGCCT	1 cut(s)	1036
StyD4I	CCNGG	5 cut(s)	129, 350, 404, 766, 1097
TaaI	ACNGT	2 cut(s)	462, 977
TaiI	ACGT	3 cut(s)	20, 150, 534
TaqI	TCGA	6 cut(s)	327, 411, 441, 513, 592, 902
TaqII	GACCGA	2 cut(s)	276, 987
TasI	AATT	4 cut(s)	569, 575, 655, 1072
TauI	GCSGC	9 cut(s)	102, 475, 482, 719, 722, 746, 800, 879, 912
TfiI	GAWTC	5 cut(s)	324, 453, 524, 709, 777
Tru1I	TTAA	2 cut(s)	870, 1128
Tru9I	TTAA	2 cut(s)	870, 1128
TscAI	CASTG	2 cut(s)	109, 554
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	5 cut(s)	8, 167, 170, 649, 682
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	3 cut(s)	37, 600, 1061
TspGWI	ACGGA	3 cut(s)	130, 465, 866
TspRI	CASTG	2 cut(s)	109, 554
Tth111I	GACNNNGTC	2 cut(s)	16, 1114
VpaK11BI	GGWCC	1 cut(s)	402
XapI	RAATTY	1 cut(s)	655
XceI	RCATGY	1 cut(s)	385
ZraI	GACGTC	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.