Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001214

Physical Location & Seq

Genomic Coordinates Reverse (-)

10539611 .. 10539961

Gene Structure 351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1074300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCGTAACTCGTGCCCGGTTTGTCGACATGAGTTGCCCGCTAACCAAAACAACGATAATTCAGATCCGGGTCTCGAGGAAGAGACGATGGGTTTGACTATCTGGAGATTACCCAGCGATGGATTTGCAGTGGGGAGATTCTCCGGCGACATAAGACCCGGCGAGAGGGAATTACCGGTTGTGTACATAGAAATGGACTGCGGGTTCAATGGTAACGGGGCTCCAAGAAGGGTATTATGGGTATCGAGGAGTCAAGGGAGCGAAAGTCGCGGGATTTGGAGTGCTTTTCATAATATAGCTTCGCTCTGGGGGAGATTACGTTCCAATTCATCGTCTTTGAGGTCCGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010035 GO:0010154 GO:0010200 GO:0010243 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0097305 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1117 zf-RING_2 zinc_ribbon_9

Protein Analysis

117

Amino Acids

12.88

Weight (kDa)

6.72

Isoelectric Point (pI)

71.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1117	PF06547	30 - 112	6.4e-29	Protein of unknown function (DUF1117)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39720 AT2G39720 AT3G46620 AT5G59550 AT5G59550
fragaria_vesca	FvH4_3g36860 FvH4_6g13340 FvH4_7g22850
malus_domestica	MD01G1136700.v1.1 MD03G1087100.v1.1 MD04G1131800.v1.1 MD07G1201700.v1.1 MD10G1074300.v1.1 MD11G1012900.v1.1 MD11G1096200.v1.1 MD12G1144900.v1.1
prunus_persica	Prupe.2G238300_v2.0.a1 Prupe.6G071800_v2.0.a1 Prupe.6G258400_v2.0.a1
pyrus_communis	pycom01g15740 pycom03g06910 pycom04g11990 pycom07g18870 pycom11g08150 pycom12g13930
rosa_chinensis	RchiOBHm_Chr1g0368011 RchiOBHm_Chr3g0466231 RchiOBHm_Chr5g0066071
rosa_laevigata	RLG00000024595 RLG00000027247 RLG00000035839
rosa_multiflora	Rmu_co8242689.1_g000001 Rmu_co8418295.1_g000001 Rmu_sc0000350.1_g000012 Rmu_sc0002406.1_g000005 Rmu_sc0005240.1_g000003 Rmu_sc0005240.1_g000004
rosa_roxburghii	Rroxscaffold_1G00014940 Rroxscaffold_4G00288940 Rroxscaffold_6G00414710
rosa_rugosa	Rorug01G0338400 Rorug03G0080500 Rorug05G0376200
rosa_samantha	Rh1AG345200 Rh1BG307500 Rh1CG323100 Rh1DG339600 Rh3BG147700 Rh3DG148400 Rh5AG434600 Rh5BG450900 Rh5CG473200 Rh5DG464500
rosa_wichuraiana	Rw1G030720 Rw3G011940 Rw5G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	25
AccII	CGCG	1 cut(s)	270
AciI	CCGC	3 cut(s)	39, 201, 270
AclWI	GGATC	1 cut(s)	59
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	2 cut(s)	119, 165
AgeI	ACCGGT	1 cut(s)	175
AgsI	TTSAA	1 cut(s)	208
AloI	GAACNNNNNNTCC	4 cut(s)	188, 220, 304, 336
AluBI	AGCT	1 cut(s)	299
AluI	AGCT	1 cut(s)	299
Alw26I	GTCTC	2 cut(s)	77, 77
AlwI	GGATC	1 cut(s)	59
Ama87I	CYCGRG	1 cut(s)	74
ArsI	GACNNNNNNTTYG	2 cut(s)	76, 108
AsiGI	ACCGGT	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	342
AsuC2I	CCSGG	4 cut(s)	17, 69, 159, 346
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	342
BaeGI	GKGCMC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	223
BauI	CACGAG	1 cut(s)	10
BccI	CCATC	2 cut(s)	82, 113
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BcnI	CCSGG	4 cut(s)	17, 69, 159, 346
BcoDI	GTCTC	2 cut(s)	77, 77
Bme1390I	CCNGG	4 cut(s)	17, 69, 159, 346
Bme18I	GGWCC	1 cut(s)	342
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	342
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	4 cut(s)	17, 69, 159, 346
BpmI	CTGGAG	1 cut(s)	124
BpuMI	CCSGG	4 cut(s)	17, 69, 159, 346
BsaI	GGTCTC	1 cut(s)	77
BsaWI	WCCGGW	1 cut(s)	175
BsaXI	ACNNNNNCTCC	4 cut(s)	250, 280, 304, 334
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 165
Bse118I	RCCGGY	1 cut(s)	175
BseLI	CCNNNNNNNGG	2 cut(s)	119, 165
BseRI	GAGGAG	1 cut(s)	262
BseSI	GKGCMC	1 cut(s)	17
BseYI	CCCAGC	1 cut(s)	113
Bsh1236I	CGCG	1 cut(s)	270
BshTI	ACCGGT	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	6 cut(s)	17, 68, 144, 159, 176, 345
BslI	CCNNNNNNNGG	2 cut(s)	119, 165
BsmAI	GTCTC	2 cut(s)	77, 77
BsmBI	CGTCTC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	2 cut(s)	17, 223
Bsp1407I	TGTACA	1 cut(s)	183
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	3 cut(s)	39, 201, 270
BspFNI	CGCG	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	222
BspPI	GGATC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	77
BsrFI	RCCGGY	1 cut(s)	175
BsrGI	TGTACA	1 cut(s)	183
BssAI	RCCGGY	1 cut(s)	175
BssMI	GATC	1 cut(s)	64
BssSI	CACGAG	1 cut(s)	10
Bst2BI	CACGAG	1 cut(s)	10
Bst6I	CTCTTC	1 cut(s)	75
BstAUI	TGTACA	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	39
BstFNI	CGCG	1 cut(s)	270
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	2 cut(s)	77, 77
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	267
BstSCI	CCNGG	4 cut(s)	15, 67, 157, 344
BstSLI	GKGCMC	1 cut(s)	17
BstUI	CGCG	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BtgZI	GCGATG	1 cut(s)	132
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	39
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	184
CspAI	ACCGGT	1 cut(s)	175
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	2 cut(s)	221, 299
CviKI_1	RGCY	2 cut(s)	221, 299
CviQI	GTAC	1 cut(s)	184
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	223
Eco31I	GGTCTC	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	74
EcoT38I	GRGCYC	1 cut(s)	223
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	1 cut(s)	32
FaiI	YATR	6 cut(s)	30, 152, 188, 238, 291, 296
FatI	CATG	1 cut(s)	28
FauI	CCCGC	3 cut(s)	46, 194, 263
FblI	GTMKAC	1 cut(s)	25
FriOI	GRGCYC	1 cut(s)	223
GsaI	CCCAGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	124
HapII	CCGG	6 cut(s)	17, 68, 144, 159, 176, 345
Hin1II	CATG	1 cut(s)	32
HincII	GTYRAC	1 cut(s)	26
HindII	GTYRAC	1 cut(s)	26
HinfI	GANTC	2 cut(s)	138, 250
HpaII	CCGG	6 cut(s)	17, 68, 144, 159, 176, 345
Hpy166II	GTNNAC	2 cut(s)	26, 184
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	2 cut(s)	74, 103
Hpy8I	GTNNAC	2 cut(s)	26, 184
HpyAV	CCTTC	1 cut(s)	222
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	1 cut(s)	128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	267
HpySE526I	ACGT	1 cut(s)	319
Hsp92II	CATG	1 cut(s)	32
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	2 cut(s)	226, 258
LpnPI	CCDG	8 cut(s)	30, 81, 88, 127, 157, 172, 189, 292
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	2 cut(s)	5, 212
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	1 cut(s)	92
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	2 cut(s)	17, 223
MluCI	AATT	3 cut(s)	58, 170, 325
MlyI	GAGTC	1 cut(s)	259
MnlI	CCTC	4 cut(s)	70, 159, 240, 333
MslI	CAYNNNNRTG	1 cut(s)	191
MspI	CCGG	6 cut(s)	17, 68, 144, 159, 176, 345
MspR9I	CCNGG	4 cut(s)	17, 69, 159, 346
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	267
NciI	CCSGG	4 cut(s)	17, 69, 159, 346
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	1 cut(s)	32
NlaIV	GGNNCC	1 cut(s)	222
PaeR7I	CTCGAG	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	138
PinAI	ACCGGT	1 cut(s)	175
PleI	GAGTC	1 cut(s)	258
PpsI	GAGTC	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	342
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	191
SalI	GTCGAC	1 cut(s)	24
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	1 cut(s)	342
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	4 cut(s)	17, 69, 159, 346
SduI	GDGCHC	2 cut(s)	17, 223
SetI	ASST	3 cut(s)	301, 322, 344
Sfr274I	CTCGAG	1 cut(s)	74
SinI	GGWCC	1 cut(s)	342
SlaI	CTCGAG	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	3 cut(s)	58, 170, 325
SsiI	CCGC	3 cut(s)	39, 201, 270
StyD4I	CCNGG	4 cut(s)	15, 67, 157, 344
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	3 cut(s)	25, 75, 245
TasI	AATT	3 cut(s)	58, 170, 325
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	138
TscAI	CASTG	1 cut(s)	135
TspDTI	ATGAA	2 cut(s)	278, 318
TspRI	CASTG	1 cut(s)	135
VpaK11BI	GGWCC	1 cut(s)	342
XhoI	CTCGAG	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.