Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005240.1

Orthogroup ID

OG0001214

Physical Location & Seq

Genomic Coordinates Reverse (-)

14004 .. 14558

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005240.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgccttgcaagcatatataccactccgattgcatcctgccgtggcttgcgcagcggaattcgtgtccggtgtgccggcaagagctgccggtggactctccggcggcggtgaatccggcggcggctctgagtgacggcgagaacgccgcgctgacgatctggaggcttccgggaggcggattcgcggtggggaggtttgccgccggcgggagaagagccggcggcggcgatagggagcttccggtggtttatacggagatggacggcgggtttaacggcggcgcgccgaggagggtttcgtggtcgaggagcggcgggagaggaagacgcagaggtggagtcaggcggtttgttagaggcttgttctcgtgtttcagcggtggcagggcagttgcgcctcggtcgtcttctcctccgggttcctggccggaagtgaggcctgcgccgatgaacgacaggagggtgaggccatccaattcggagaggccagcttccacggcccggacgcgcaggacttggtctatggaggttaacagtggggttgtgatatggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051603 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1117 zf-RING_2 zinc_ribbon_9

Protein Analysis

184

Amino Acids

19.87

Weight (kDa)

11.47

Isoelectric Point (pI)

80.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39720 AT2G39720 AT3G46620 AT5G59550 AT5G59550
fragaria_vesca	FvH4_3g36860 FvH4_6g13340 FvH4_7g22850
malus_domestica	MD01G1136700.v1.1 MD03G1087100.v1.1 MD04G1131800.v1.1 MD07G1201700.v1.1 MD10G1074300.v1.1 MD11G1012900.v1.1 MD11G1096200.v1.1 MD12G1144900.v1.1
prunus_persica	Prupe.2G238300_v2.0.a1 Prupe.6G071800_v2.0.a1 Prupe.6G258400_v2.0.a1
pyrus_communis	pycom01g15740 pycom03g06910 pycom04g11990 pycom07g18870 pycom11g08150 pycom12g13930
rosa_chinensis	RchiOBHm_Chr1g0368011 RchiOBHm_Chr3g0466231 RchiOBHm_Chr5g0066071
rosa_laevigata	RLG00000024595 RLG00000027247 RLG00000035839
rosa_multiflora	Rmu_co8242689.1_g000001 Rmu_co8418295.1_g000001 Rmu_sc0000350.1_g000012 Rmu_sc0002406.1_g000005 Rmu_sc0005240.1_g000003 Rmu_sc0005240.1_g000004
rosa_roxburghii	Rroxscaffold_1G00014940 Rroxscaffold_4G00288940 Rroxscaffold_6G00414710
rosa_rugosa	Rorug01G0338400 Rorug03G0080500 Rorug05G0376200
rosa_samantha	Rh1AG345200 Rh1BG307500 Rh1CG323100 Rh1DG339600 Rh3BG147700 Rh3DG148400 Rh5AG434600 Rh5BG450900 Rh5CG473200 Rh5DG464500
rosa_wichuraiana	Rw1G030720 Rw3G011940 Rw5G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	51
AccBSI	CCGCTC	1 cut(s)	312
AccII	CGCG	4 cut(s)	149, 185, 284, 508
AcoI	YGGCCR	1 cut(s)	425
AcsI	RAATTY	1 cut(s)	58
AfiI	CCNNNNNNNGG	3 cut(s)	176, 207, 501
AjnI	CCWGG	1 cut(s)	422
AluBI	AGCT	3 cut(s)	85, 238, 491
AluI	AGCT	3 cut(s)	85, 238, 491
AoxI	GGCC	5 cut(s)	425, 437, 467, 485, 498
ApeKI	GCWGC	2 cut(s)	52, 85
ApoI	RAATTY	1 cut(s)	58
AscI	GGCGCGCC	1 cut(s)	282
AspLEI	GCGC	7 cut(s)	52, 151, 284, 286, 397, 445, 510
AspS9I	GGNCC	1 cut(s)	499
AsuC2I	CCSGG	3 cut(s)	171, 417, 502
AsuHPI	GGTGA	2 cut(s)	121, 475
BauI	CACGAG	1 cut(s)	367
BbsI	GAAGAC	2 cut(s)	331, 399
BbvI	GCAGC	2 cut(s)	64, 72
BccI	CCATC	2 cut(s)	253, 478
BceAI	ACGGC	5 cut(s)	25, 151, 280, 292, 513
BciT130I	CCWGG	1 cut(s)	424
BcnI	CCSGG	3 cut(s)	171, 417, 502
Bme1390I	CCNGG	4 cut(s)	171, 417, 424, 502
BmgT120I	GGNCC	1 cut(s)	499
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	4 cut(s)	171, 417, 424, 502
BmsI	GCATC	1 cut(s)	42
BpiI	GAAGAC	2 cut(s)	331, 399
BpmI	CTGGAG	1 cut(s)	181
BpuMI	CCSGG	3 cut(s)	171, 417, 502
BsaJI	CCNNGG	4 cut(s)	41, 287, 398, 495
BsaWI	WCCGGW	2 cut(s)	67, 241
Bsc4I	CCNNNNNNNGG	3 cut(s)	176, 207, 501
Bse118I	RCCGGY	4 cut(s)	75, 88, 203, 218
BseBI	CCWGG	1 cut(s)	424
BseDI	CCNNGG	4 cut(s)	41, 287, 398, 495
BseGI	GGATG	2 cut(s)	33, 470
BseLI	CCNNNNNNNGG	3 cut(s)	176, 207, 501
BseMII	CTCAG	1 cut(s)	119
BsePI	GCGCGC	1 cut(s)	282
BseRI	GAGGAG	3 cut(s)	304, 322, 402
BseXI	GCAGC	2 cut(s)	64, 72
Bsh1236I	CGCG	4 cut(s)	149, 185, 284, 508
Bsh1285I	CGRYCG	1 cut(s)	404
BshFI	GGCC	5 cut(s)	427, 439, 469, 487, 500
BsiEI	CGRYCG	1 cut(s)	404
BslI	CCNNNNNNNGG	3 cut(s)	176, 207, 501
BsnI	GGCC	5 cut(s)	427, 439, 469, 487, 500
Bsp143I	GATC	1 cut(s)	156
BspANI	GGCC	5 cut(s)	427, 439, 469, 487, 500
BspCNI	CTCAG	1 cut(s)	120
BspFNI	CGCG	4 cut(s)	149, 185, 284, 508
BspLI	GGNNCC	1 cut(s)	421
BspQI	GCTCTTC	1 cut(s)	208
BsrBI	CCGCTC	1 cut(s)	312
BsrFI	RCCGGY	4 cut(s)	75, 88, 203, 218
BssAI	RCCGGY	4 cut(s)	75, 88, 203, 218
BssECI	CCNNGG	4 cut(s)	41, 287, 398, 495
BssHII	GCGCGC	1 cut(s)	282
BssMI	GATC	1 cut(s)	156
BssSI	CACGAG	1 cut(s)	367
Bst2BI	CACGAG	1 cut(s)	367
Bst2UI	CCWGG	1 cut(s)	424
Bst4CI	ACNGT	1 cut(s)	536
Bst6I	CTCTTC	1 cut(s)	208
BstAPI	GCANNNNNTGC	1 cut(s)	85
BstC8I	GCNNGC	8 cut(s)	11, 48, 77, 205, 220, 284, 441, 489
BstDEI	CTNAG	1 cut(s)	128
BstDSI	CCRYGG	2 cut(s)	41, 495
BstF5I	GGATG	2 cut(s)	33, 470
BstFNI	CGCG	4 cut(s)	149, 185, 284, 508
BstHHI	GCGC	7 cut(s)	52, 151, 284, 286, 397, 445, 510
BstKTI	GATC	1 cut(s)	159
BstMBI	GATC	1 cut(s)	156
BstMCI	CGRYCG	1 cut(s)	404
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 52, 85, 497
BstNI	CCWGG	1 cut(s)	424
BstSCI	CCNGG	4 cut(s)	169, 415, 422, 500
BstUI	CGCG	4 cut(s)	149, 185, 284, 508
BstV1I	GCAGC	2 cut(s)	64, 72
BstV2I	GAAGAC	2 cut(s)	331, 399
BsuRI	GGCC	5 cut(s)	427, 439, 469, 487, 500
BtgI	CCRYGG	2 cut(s)	41, 495
BtsCI	GGATG	2 cut(s)	33, 470
BtsIMutI	CAGTG	1 cut(s)	541
Cac8I	GCNNGC	8 cut(s)	11, 48, 77, 205, 220, 284, 441, 489
CfoI	GCGC	7 cut(s)	52, 151, 284, 286, 397, 445, 510
Cfr10I	RCCGGY	4 cut(s)	75, 88, 203, 218
Cfr13I	GGNCC	1 cut(s)	499
CseI	GACGC	2 cut(s)	336, 514
CspCI	CAANNNNNGTGG	2 cut(s)	11, 46
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
EaeI	YGGCCR	1 cut(s)	425
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
EciI	GGCGGA	1 cut(s)	192
Eco147I	AGGCCT	1 cut(s)	439
EcoRI	GAATTC	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	422
FaiI	YATR	6 cut(s)	15, 17, 19, 252, 524, 550
FauI	CCCGC	3 cut(s)	200, 260, 308
FokI	GGATG	2 cut(s)	20, 457
FspI	TGCGCA	1 cut(s)	51
GlaI	GCGC	7 cut(s)	51, 150, 283, 285, 396, 444, 509
GsuI	CTGGAG	1 cut(s)	181
HaeIII	GGCC	5 cut(s)	427, 439, 469, 487, 500
HgaI	GACGC	2 cut(s)	336, 514
HhaI	GCGC	7 cut(s)	52, 151, 284, 286, 397, 445, 510
Hin6I	GCGC	7 cut(s)	50, 149, 282, 284, 395, 443, 508
HinP1I	GCGC	7 cut(s)	50, 149, 282, 284, 395, 443, 508
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HinfI	GANTC	4 cut(s)	95, 112, 180, 339
HpaI	GTTAAC	1 cut(s)	532
HphI	GGTGA	2 cut(s)	121, 475
Hpy166II	GTNNAC	2 cut(s)	94, 532
Hpy188I	TCNGA	3 cut(s)	28, 129, 481
Hpy188III	TCNNGA	1 cut(s)	160
Hpy8I	GTNNAC	2 cut(s)	94, 532
HpyCH4III	ACNGT	1 cut(s)	536
HpyCH4V	TGCA	2 cut(s)	9, 33
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 52, 85, 497
HpyF3I	CTNAG	1 cut(s)	128
HspAI	GCGC	7 cut(s)	50, 149, 282, 284, 395, 443, 508
KroI	GCCGGC	3 cut(s)	75, 203, 218
KroNI	GCCGGC	3 cut(s)	77, 205, 220
KspAI	GTTAAC	1 cut(s)	532
Kzo9I	GATC	1 cut(s)	156
LguI	GCTCTTC	1 cut(s)	208
LmnI	GCTCC	2 cut(s)	235, 309
Lsp1109I	GCAGC	2 cut(s)	64, 72
LweI	GCATC	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	1 cut(s)	158
MbiI	CCGCTC	1 cut(s)	312
MboI	GATC	1 cut(s)	156
MboII	GAAGA	3 cut(s)	225, 336, 399
MluCI	AATT	2 cut(s)	58, 475
MlyI	GAGTC	2 cut(s)	89, 348
MreI	CGCCGGCG	1 cut(s)	203
MroNI	GCCGGC	3 cut(s)	75, 203, 218
MseI	TTAA	2 cut(s)	273, 531
MspA1I	CMGCKG	2 cut(s)	55, 378
MspR9I	CCNGG	4 cut(s)	171, 417, 424, 502
MvaI	CCWGG	1 cut(s)	424
MvnI	CGCG	4 cut(s)	149, 185, 284, 508
MwoI	GCNNNNNNNGC	4 cut(s)	10, 52, 85, 497
NaeI	GCCGGC	3 cut(s)	77, 205, 220
NciI	CCSGG	3 cut(s)	171, 417, 502
NdeII	GATC	1 cut(s)	156
NgoMIV	GCCGGC	3 cut(s)	75, 203, 218
NlaIV	GGNNCC	1 cut(s)	421
NmeAIII	GCCGAG	1 cut(s)	312
NmuCI	GTSAC	1 cut(s)	131
NsbI	TGCGCA	1 cut(s)	51
PalAI	GGCGCGCC	1 cut(s)	282
PauI	GCGCGC	1 cut(s)	282
PceI	AGGCCT	1 cut(s)	439
PciSI	GCTCTTC	1 cut(s)	208
PdiI	GCCGGC	3 cut(s)	77, 205, 220
PfeI	GAWTC	2 cut(s)	112, 180
PflFI	GACNNNGTC	1 cut(s)	517
PfoI	TCCNGGA	1 cut(s)	169
PleI	GAGTC	2 cut(s)	89, 347
PpsI	GAGTC	2 cut(s)	89, 347
Psp6I	CCWGG	1 cut(s)	422
PspGI	CCWGG	1 cut(s)	422
PspN4I	GGNNCC	1 cut(s)	421
PspPI	GGNCC	1 cut(s)	499
PsyI	GACNNNGTC	1 cut(s)	517
PteI	GCGCGC	1 cut(s)	282
SapI	GCTCTTC	1 cut(s)	208
SaqAI	TTAA	2 cut(s)	273, 531
Sau3AI	GATC	1 cut(s)	156
Sau96I	GGNCC	1 cut(s)	499
SchI	GAGTC	2 cut(s)	89, 348
ScrFI	CCNGG	4 cut(s)	171, 417, 424, 502
SetI	ASST	6 cut(s)	87, 197, 240, 337, 493, 531
SfaNI	GCATC	1 cut(s)	42
SgrAI	CRCCGGYG	1 cut(s)	203
SgsI	GGCGCGCC	1 cut(s)	282
Sse9I	AATT	2 cut(s)	58, 475
SseBI	AGGCCT	1 cut(s)	439
StuI	AGGCCT	1 cut(s)	439
StyD4I	CCNGG	4 cut(s)	169, 415, 422, 500
TaaI	ACNGT	1 cut(s)	536
TaqI	TCGA	1 cut(s)	305
TaqII	GACCGA	1 cut(s)	390
TasI	AATT	2 cut(s)	58, 475
TauI	GCSGC	9 cut(s)	107, 122, 125, 149, 203, 225, 228, 282, 315
TfiI	GAWTC	2 cut(s)	112, 180
Tru1I	TTAA	2 cut(s)	273, 531
Tru9I	TTAA	2 cut(s)	273, 531
TscAI	CASTG	1 cut(s)	541
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	2 cut(s)	52, 85
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	1 cut(s)	464
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	1 cut(s)	541
Tth111I	GACNNNGTC	1 cut(s)	517
XapI	RAATTY	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.