AT3G46620

Zinc finger (C3HC4-type RING finger) family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
17178601 .. 17180559
1959 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G46620.1

Sequence Viewer

Length: 1188 bp
ATGATGCCAAATTCTAGATCGGCGACAATAACTCCGACGACAGAATCAACCACCACAACAACAACAACAACAACGACTCTAACGACGTCGTATTGGTGTTACAGTTGTACACGATTCATCAGCGTTTGGGAAGATCAAGACGCAAACGCTGGAGTCTTATGTCCTTATTGCAACGGTGGATTCATCGAAGAGATTGAAGATTCTTCTAATTCCACCGTCGCGGCGATTCCGGCTTCGACTCCGGAAGTTAGATCGGTTGAGGAAACACATAGATCTATAATTAGACGTCGTAGATCTAATCGCCGGACGTCCTTTAATCCGGTAATCGTCTTACACGGCGGAGGAGGAGGAGGAGCCGGTGAGAGAGTTGAGAACGAAGAAGGTGACGGAGCTACTAGAGAACGACGAGCTTATGAGTTTTATTACGATGATGGATCTGGTTCAGGTCTAAGACCTCTTCCTGATTCTGTATCTGAGATCTTGATGGGATCTGGATTCGAACGGTTACTTGAACAATTGAGTCAGATCGAAGCGTCAGGTAACGGAATCGGTAGATCTGGGAATCCACCGGCGTCGAAATCAGCGATTGAATCTTTACCTAGAGTCGAAATCTCAGATTGTCATACGAAAGCAGAAGCTAATTGCGCCGTGTGTACGGAGGTTTTCGAAGCCGGAATCGAAGGTCGTGAGATGCCGTGTAAACACATATTTCACGGTGATTGTATTGTTCCATGGCTTTCGATTCGGAATTCGTGTCCTGTGTGTAGATTTGAGTTACCTTCAGATCCAATCCAACGGAGTAATGAAGAAGAACATGCCGTTGGGATGACGATTTGGAGATTACCTGGTGGTGGTTTCGCTGTTGGTAGGTTTAACGCGGGAGTGAGAGAAGGTGAGAGGATATTGCCGGTGGTATTGACGGAGATGGATGGTGGTGGACTTGGTAGTAATGAAGGACCGAGAAGGATATCTTGGGTTAGAGCTCATGAGACACCGGAGATGAGTAGGAATGGTGGTCGTTCTGGTAATGGTGGTAGATTGAGAAGAGCTGTTCGTGGAATGGTTTCGTTTATGAGAAGAGTTAGACCAAGTCGTGGCTCTTCGAATTCGAATGTTATTGATTTGGATAGTGATGGTGAAACTAGAGTTATGAATCGATCAACTTCGTTGATCAGAAGATTTTTCTGA

Protein Analysis

395

Amino Acids

43.15

Weight (kDa)

6.07

Isoelectric Point (pI)

70.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_19 PF14369 29 - 65 7.8e-15 zinc-ribbon
zf-rbx1 PF12678 207 - 256 3.8e-07 RING-H2 zinc finger domain
zf-RING_2 PF13639 214 - 256 2e-12 Ring finger domain
zf-C3HC4_2 PF13923 214 - 255 3.2e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 214 - 242 7.7e-08 RING-like zinc finger
zf-C3HC4 PF00097 215 - 255 8.7e-07 Zinc finger, C3HC4 type (RING finger)
DUF1117 PF06547 274 - 393 1.7e-38 Protein of unknown function (DUF1117)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 89, 289, 311
AccB7I CCANNNNNTGG 1 cut(s) 1094
AccII CGCG 2 cut(s) 221, 878
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 3 cut(s) 221, 339, 878
AclWI GGATC 3 cut(s) 442, 496, 779
AcsI RAATTY 3 cut(s) 10, 748, 1105
AcuI CTGAAG 1 cut(s) 765
AcyI GRCGYC 4 cut(s) 86, 286, 308, 572
AfaI GTAC 2 cut(s) 109, 655
AfiI CCNNNNNNNGG 2 cut(s) 851, 1094
AgsI TTSAA 3 cut(s) 197, 512, 590
AjnI CCWGG 1 cut(s) 844
AjuI GAANNNNNNNTTGG 4 cut(s) 804, 836, 955, 987
AluBI AGCT 5 cut(s) 392, 410, 638, 983, 1049
AluI AGCT 5 cut(s) 392, 410, 638, 983, 1049
Alw21I GWGCWC 1 cut(s) 985
Alw26I GTCTC 1 cut(s) 983
AlwI GGATC 3 cut(s) 442, 496, 779
Aor13HI TCCGGA 1 cut(s) 241
ApoI RAATTY 3 cut(s) 10, 748, 1105
Asp700I GAANNNNTTC 1 cut(s) 1063
AspLEI GCGC 1 cut(s) 647
AspS9I GGNCC 1 cut(s) 956
AsuHPI GGTGA 5 cut(s) 371, 395, 728, 905, 1148
AsuII TTCGAA 4 cut(s) 498, 666, 1103, 1109
AvaII GGWCC 1 cut(s) 956
BanII GRGCYC 1 cut(s) 985
Bbv12I GWGCWC 1 cut(s) 985
BccI CCATC 5 cut(s) 425, 478, 919, 923, 1127
BceAI ACGGC 4 cut(s) 352, 632, 679, 803
BciT130I CCWGG 1 cut(s) 846
BclI TGATCA 1 cut(s) 1170
BcoDI GTCTC 1 cut(s) 983
BfaI CTAG 4 cut(s) 15, 396, 600, 1143
BglII AGATCT 4 cut(s) 272, 293, 477, 554
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
Bme1390I CCNGG 1 cut(s) 846
Bme18I GGWCC 1 cut(s) 956
BmgT120I GGNCC 1 cut(s) 956
BmiI GGNNCC 1 cut(s) 355
BmrFI CCNGG 1 cut(s) 846
BmsI GCATC 1 cut(s) 681
BpmI CTGGAG 1 cut(s) 171
Bpu14I TTCGAA 4 cut(s) 498, 666, 1103, 1109
Bsa29I ATCGAT 1 cut(s) 1156
BsaHI GRCGYC 4 cut(s) 86, 286, 308, 572
BsaJI CCNNGG 1 cut(s) 731
BsaWI WCCGGW 3 cut(s) 241, 319, 994
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bsc4I CCNNNNNNNGG 2 cut(s) 851, 1094
Bse118I RCCGGY 3 cut(s) 356, 568, 907
BseAI TCCGGA 1 cut(s) 241
BseBI CCWGG 1 cut(s) 846
BseCI ATCGAT 1 cut(s) 1156
BseDI CCNNGG 1 cut(s) 731
BseGI GGATG 2 cut(s) 831, 934
BseLI CCNNNNNNNGG 2 cut(s) 851, 1094
BseMII CTCAG 2 cut(s) 465, 627
BseRI GAGGAG 4 cut(s) 357, 360, 363, 366
Bsh1236I CGCG 2 cut(s) 221, 878
BshVI ATCGAT 1 cut(s) 1156
BsiHKAI GWGCWC 1 cut(s) 985
BsiSI CCGG 9 cut(s) 230, 242, 304, 320, 357, 569, 672, 908, 995
BslI CCNNNNNNNGG 2 cut(s) 851, 1094
BsmAI GTCTC 1 cut(s) 983
Bsp119I TTCGAA 4 cut(s) 498, 666, 1103, 1109
Bsp1286I GDGCHC 1 cut(s) 985
Bsp13I TCCGGA 1 cut(s) 241
Bsp1407I TGTACA 1 cut(s) 107
Bsp19I CCATGG 1 cut(s) 731
BspACI CCGC 3 cut(s) 221, 339, 878
BspCNI CTCAG 2 cut(s) 466, 626
BspDI ATCGAT 1 cut(s) 1156
BspEI TCCGGA 1 cut(s) 241
BspFNI CGCG 2 cut(s) 221, 878
BspHI TCATGA 1 cut(s) 985
BspLI GGNNCC 1 cut(s) 355
BspPI GGATC 3 cut(s) 442, 496, 779
BspQI GCTCTTC 2 cut(s) 1039, 1105
BspT104I TTCGAA 4 cut(s) 498, 666, 1103, 1109
BsrFI RCCGGY 3 cut(s) 356, 568, 907
BsrGI TGTACA 1 cut(s) 107
BssAI RCCGGY 3 cut(s) 356, 568, 907
BssECI CCNNGG 1 cut(s) 731
BssNI GRCGYC 4 cut(s) 86, 286, 308, 572
BssT1I CCWWGG 1 cut(s) 731
Bst2UI CCWGG 1 cut(s) 846
Bst4CI ACNGT 5 cut(s) 104, 176, 217, 504, 716
Bst6I CTCTTC 5 cut(s) 183, 462, 1039, 1072, 1105
BstACI GRCGYC 4 cut(s) 86, 286, 308, 572
BstAUI TGTACA 1 cut(s) 107
BstBI TTCGAA 4 cut(s) 498, 666, 1103, 1109
BstDEI CTNAG 3 cut(s) 449, 474, 613
BstDSI CCRYGG 1 cut(s) 731
BstF5I GGATG 2 cut(s) 831, 934
BstFNI CGCG 2 cut(s) 221, 878
BstHHI GCGC 1 cut(s) 647
BstMAI GTCTC 1 cut(s) 983
BstMWI GCNNNNNNNGC 2 cut(s) 230, 644
BstNI CCWGG 1 cut(s) 846
BstNSI RCATGY 1 cut(s) 818
BstSCI CCNGG 1 cut(s) 844
BstUI CGCG 2 cut(s) 221, 878
BstX2I RGATCY 7 cut(s) 272, 293, 434, 477, 488, 554, 784
BstYI RGATCY 7 cut(s) 272, 293, 434, 477, 488, 554, 784
Bsu15I ATCGAT 1 cut(s) 1156
BsuTUI ATCGAT 1 cut(s) 1156
BtgI CCRYGG 1 cut(s) 731
BtsCI GGATG 2 cut(s) 831, 934
CciI TCATGA 1 cut(s) 985
CfoI GCGC 1 cut(s) 647
Cfr10I RCCGGY 3 cut(s) 356, 568, 907
Cfr13I GGNCC 1 cut(s) 956
ClaI ATCGAT 1 cut(s) 1156
CseI GACGC 3 cut(s) 149, 522, 561
CsiI ACCWGGT 1 cut(s) 844
Csp6I GTAC 2 cut(s) 108, 654
CviAII CATG 3 cut(s) 732, 815, 986
CviQI GTAC 2 cut(s) 108, 654
DdeI CTNAG 3 cut(s) 449, 474, 613
Eam1104I CTCTTC 5 cut(s) 183, 462, 1039, 1072, 1105
EarI CTCTTC 5 cut(s) 183, 462, 1039, 1072, 1105
EciI GGCGGA 1 cut(s) 354
Ecl136II GAGCTC 1 cut(s) 983
Eco130I CCWWGG 1 cut(s) 731
Eco24I GRGCYC 1 cut(s) 985
Eco32I GATATC 1 cut(s) 969
Eco47I GGWCC 1 cut(s) 956
Eco53kI GAGCTC 1 cut(s) 983
Eco57I CTGAAG 1 cut(s) 765
EcoICRI GAGCTC 1 cut(s) 983
EcoRI GAATTC 2 cut(s) 748, 1105
EcoRII CCWGG 1 cut(s) 844
EcoRV GATATC 1 cut(s) 969
EcoT14I CCWWGG 1 cut(s) 731
EcoT38I GRGCYC 1 cut(s) 985
ErhI CCWWGG 1 cut(s) 731
FaeI CATG 3 cut(s) 735, 818, 989
FalI AAGNNNNNCTT 2 cut(s) 955, 987
FatI CATG 3 cut(s) 731, 814, 985
FauI CCCGC 1 cut(s) 871
FbaI TGATCA 1 cut(s) 1170
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 2 cut(s) 838, 941
FriOI GRGCYC 1 cut(s) 985
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 4 cut(s) 15, 396, 600, 1143
GlaI GCGC 1 cut(s) 646
GluI GCNGC 1 cut(s) 222
GsuI CTGGAG 1 cut(s) 171
HapII CCGG 9 cut(s) 230, 242, 304, 320, 357, 569, 672, 908, 995
HgaI GACGC 3 cut(s) 149, 522, 561
HhaI GCGC 1 cut(s) 647
Hin1I GRCGYC 4 cut(s) 86, 286, 308, 572
Hin1II CATG 3 cut(s) 735, 818, 989
Hin6I GCGC 1 cut(s) 645
HinP1I GCGC 1 cut(s) 645
HpaII CCGG 9 cut(s) 230, 242, 304, 320, 357, 569, 672, 908, 995
HphI GGTGA 5 cut(s) 371, 395, 728, 905, 1148
Hpy166II GTNNAC 4 cut(s) 110, 654, 701, 938
Hpy188I TCNGA 8 cut(s) 36, 475, 525, 616, 747, 784, 1175, 1187
Hpy188III TCNNGA 8 cut(s) 15, 137, 242, 461, 481, 492, 686, 986
Hpy8I GTNNAC 4 cut(s) 110, 654, 701, 938
Hpy99I CGWCG 7 cut(s) 40, 88, 91, 221, 291, 408, 577
HpyAV CCTTC 6 cut(s) 374, 674, 789, 884, 947, 957
HpyCH4III ACNGT 5 cut(s) 104, 176, 217, 504, 716
HpyCH4IV ACGT 3 cut(s) 86, 286, 308
HpyCH4V TGCA 1 cut(s) 171
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 644
HpyF3I CTNAG 3 cut(s) 449, 474, 613
HpySE526I ACGT 3 cut(s) 86, 286, 308
Hsp92I GRCGYC 4 cut(s) 86, 286, 308, 572
Hsp92II CATG 3 cut(s) 735, 818, 989
HspAI GCGC 1 cut(s) 645
Kpn2I TCCGGA 1 cut(s) 241
Ksp22I TGATCA 1 cut(s) 1170
LguI GCTCTTC 2 cut(s) 1039, 1105
LmnI GCTCC 2 cut(s) 353, 389
LweI GCATC 1 cut(s) 681
MabI ACCWGGT 1 cut(s) 844
MaeI CTAG 4 cut(s) 15, 396, 600, 1143
MaeII ACGT 3 cut(s) 86, 286, 308
MaeIII GTNAC 5 cut(s) 98, 383, 504, 539, 774
MfeI CAATTG 1 cut(s) 515
MflI RGATCY 7 cut(s) 272, 293, 434, 477, 488, 554, 784
MhlI GDGCHC 1 cut(s) 985
MluCI AATT 7 cut(s) 10, 208, 279, 515, 640, 748, 1105
MlyI GAGTC 5 cut(s) 70, 162, 232, 529, 612
MmeI TCCRAC 2 cut(s) 59, 817
MnlI CCTC 8 cut(s) 253, 335, 338, 341, 344, 465, 652, 891
MroI TCCGGA 1 cut(s) 241
MroXI GAANNNNTTC 1 cut(s) 1063
MseI TTAA 2 cut(s) 315, 873
MspI CCGG 9 cut(s) 230, 242, 304, 320, 357, 569, 672, 908, 995
MspR9I CCNGG 1 cut(s) 846
MunI CAATTG 1 cut(s) 515
MvaI CCWGG 1 cut(s) 846
MvnI CGCG 2 cut(s) 221, 878
MwoI GCNNNNNNNGC 2 cut(s) 230, 644
NcoI CCATGG 1 cut(s) 731
NlaIII CATG 3 cut(s) 735, 818, 989
NlaIV GGNNCC 1 cut(s) 355
NmuCI GTSAC 1 cut(s) 383
NspI RCATGY 1 cut(s) 818
NspV TTCGAA 4 cut(s) 498, 666, 1103, 1109
PagI TCATGA 1 cut(s) 985
PciSI GCTCTTC 2 cut(s) 1039, 1105
PcsI WCGNNNNNNNCGW 2 cut(s) 80, 581
PdmI GAANNNNTTC 1 cut(s) 1063
PflFI GACNNNGTC 1 cut(s) 1089
PflMI CCANNNNNTGG 1 cut(s) 1094
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 5 cut(s) 70, 161, 232, 528, 611
PpsI GAGTC 5 cut(s) 70, 161, 232, 528, 611
Psp124BI GAGCTC 1 cut(s) 985
Psp6I CCWGG 1 cut(s) 844
PspGI CCWGG 1 cut(s) 844
PspN4I GGNNCC 1 cut(s) 355
PspPI GGNCC 1 cut(s) 956
PsuI RGATCY 7 cut(s) 272, 293, 434, 477, 488, 554, 784
PsyI GACNNNGTC 1 cut(s) 1089
RsaI GTAC 2 cut(s) 109, 655
RsaNI GTAC 2 cut(s) 108, 654
SacI GAGCTC 1 cut(s) 985
SapI GCTCTTC 2 cut(s) 1039, 1105
SaqAI TTAA 2 cut(s) 315, 873
SatI GCNGC 1 cut(s) 222
Sau96I GGNCC 1 cut(s) 956
SchI GAGTC 5 cut(s) 70, 162, 232, 529, 612
ScrFI CCNGG 1 cut(s) 846
SduI GDGCHC 1 cut(s) 985
SexAI ACCWGGT 1 cut(s) 844
SfaNI GCATC 1 cut(s) 681
SfuI TTCGAA 4 cut(s) 498, 666, 1103, 1109
SgrAI CRCCGGYG 1 cut(s) 568
SinI GGWCC 1 cut(s) 956
Sse9I AATT 7 cut(s) 10, 208, 279, 515, 640, 748, 1105
SsiI CCGC 3 cut(s) 221, 339, 878
SspMI CTAG 4 cut(s) 15, 396, 600, 1143
SstI GAGCTC 1 cut(s) 985
StyD4I CCNGG 1 cut(s) 844
StyI CCWWGG 1 cut(s) 731
TaaI ACNGT 5 cut(s) 104, 176, 217, 504, 716
TaiI ACGT 3 cut(s) 89, 289, 311
TaqII GACCGA 1 cut(s) 973
TasI AATT 7 cut(s) 10, 208, 279, 515, 640, 748, 1105
TatI WGTACW 1 cut(s) 107
TauI GCSGC 1 cut(s) 224
Tru1I TTAA 2 cut(s) 315, 873
Tru9I TTAA 2 cut(s) 315, 873
TseFI GTSAC 1 cut(s) 383
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 5 cut(s) 106, 172, 819, 966, 1166
TspGWI ACGGA 5 cut(s) 402, 558, 671, 811, 935
Tth111I GACNNNGTC 1 cut(s) 1089
Van91I CCANNNNNTGG 1 cut(s) 1094
VpaK11BI GGWCC 1 cut(s) 956
XapI RAATTY 3 cut(s) 10, 748, 1105
XbaI TCTAGA 1 cut(s) 14
XceI RCATGY 1 cut(s) 818
XmnI GAANNNNTTC 1 cut(s) 1063
XspI CTAG 4 cut(s) 15, 396, 600, 1143
ZraI GACGTC 3 cut(s) 87, 287, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.