Zinc finger (C3HC4-type RING finger) family protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Zn_ribbon_19 | PF14369 | 29 - 65 | 7.8e-15 | zinc-ribbon |
| zf-rbx1 | PF12678 | 207 - 256 | 3.8e-07 | RING-H2 zinc finger domain |
| zf-RING_2 | PF13639 | 214 - 256 | 2e-12 | Ring finger domain |
| zf-C3HC4_2 | PF13923 | 214 - 255 | 3.2e-09 | Zinc finger, C3HC4 type (RING finger) |
| zf-RING_11 | PF17123 | 214 - 242 | 7.7e-08 | RING-like zinc finger |
| zf-C3HC4 | PF00097 | 215 - 255 | 8.7e-07 | Zinc finger, C3HC4 type (RING finger) |
| DUF1117 | PF06547 | 274 - 393 | 1.7e-38 | Protein of unknown function (DUF1117) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 3 cut(s) | 89, 289, 311 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1094 |
| AccII | CGCG | 2 cut(s) | 221, 878 |
| AccIII | TCCGGA | 1 cut(s) | 241 |
| AciI | CCGC | 3 cut(s) | 221, 339, 878 |
| AclWI | GGATC | 3 cut(s) | 442, 496, 779 |
| AcsI | RAATTY | 3 cut(s) | 10, 748, 1105 |
| AcuI | CTGAAG | 1 cut(s) | 765 |
| AcyI | GRCGYC | 4 cut(s) | 86, 286, 308, 572 |
| AfaI | GTAC | 2 cut(s) | 109, 655 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 851, 1094 |
| AgsI | TTSAA | 3 cut(s) | 197, 512, 590 |
| AjnI | CCWGG | 1 cut(s) | 844 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 804, 836, 955, 987 |
| AluBI | AGCT | 5 cut(s) | 392, 410, 638, 983, 1049 |
| AluI | AGCT | 5 cut(s) | 392, 410, 638, 983, 1049 |
| Alw21I | GWGCWC | 1 cut(s) | 985 |
| Alw26I | GTCTC | 1 cut(s) | 983 |
| AlwI | GGATC | 3 cut(s) | 442, 496, 779 |
| Aor13HI | TCCGGA | 1 cut(s) | 241 |
| ApoI | RAATTY | 3 cut(s) | 10, 748, 1105 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1063 |
| AspLEI | GCGC | 1 cut(s) | 647 |
| AspS9I | GGNCC | 1 cut(s) | 956 |
| AsuHPI | GGTGA | 5 cut(s) | 371, 395, 728, 905, 1148 |
| AsuII | TTCGAA | 4 cut(s) | 498, 666, 1103, 1109 |
| AvaII | GGWCC | 1 cut(s) | 956 |
| BanII | GRGCYC | 1 cut(s) | 985 |
| Bbv12I | GWGCWC | 1 cut(s) | 985 |
| BccI | CCATC | 5 cut(s) | 425, 478, 919, 923, 1127 |
| BceAI | ACGGC | 4 cut(s) | 352, 632, 679, 803 |
| BciT130I | CCWGG | 1 cut(s) | 846 |
| BclI | TGATCA | 1 cut(s) | 1170 |
| BcoDI | GTCTC | 1 cut(s) | 983 |
| BfaI | CTAG | 4 cut(s) | 15, 396, 600, 1143 |
| BglII | AGATCT | 4 cut(s) | 272, 293, 477, 554 |
| BisI | GCNGC | 1 cut(s) | 222 |
| BlsI | GCNGC | 1 cut(s) | 223 |
| Bme1390I | CCNGG | 1 cut(s) | 846 |
| Bme18I | GGWCC | 1 cut(s) | 956 |
| BmgT120I | GGNCC | 1 cut(s) | 956 |
| BmiI | GGNNCC | 1 cut(s) | 355 |
| BmrFI | CCNGG | 1 cut(s) | 846 |
| BmsI | GCATC | 1 cut(s) | 681 |
| BpmI | CTGGAG | 1 cut(s) | 171 |
| Bpu14I | TTCGAA | 4 cut(s) | 498, 666, 1103, 1109 |
| Bsa29I | ATCGAT | 1 cut(s) | 1156 |
| BsaHI | GRCGYC | 4 cut(s) | 86, 286, 308, 572 |
| BsaJI | CCNNGG | 1 cut(s) | 731 |
| BsaWI | WCCGGW | 3 cut(s) | 241, 319, 994 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 16, 46 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 851, 1094 |
| Bse118I | RCCGGY | 3 cut(s) | 356, 568, 907 |
| BseAI | TCCGGA | 1 cut(s) | 241 |
| BseBI | CCWGG | 1 cut(s) | 846 |
| BseCI | ATCGAT | 1 cut(s) | 1156 |
| BseDI | CCNNGG | 1 cut(s) | 731 |
| BseGI | GGATG | 2 cut(s) | 831, 934 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 851, 1094 |
| BseMII | CTCAG | 2 cut(s) | 465, 627 |
| BseRI | GAGGAG | 4 cut(s) | 357, 360, 363, 366 |
| Bsh1236I | CGCG | 2 cut(s) | 221, 878 |
| BshVI | ATCGAT | 1 cut(s) | 1156 |
| BsiHKAI | GWGCWC | 1 cut(s) | 985 |
| BsiSI | CCGG | 9 cut(s) | 230, 242, 304, 320, 357, 569, 672, 908, 995 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 851, 1094 |
| BsmAI | GTCTC | 1 cut(s) | 983 |
| Bsp119I | TTCGAA | 4 cut(s) | 498, 666, 1103, 1109 |
| Bsp1286I | GDGCHC | 1 cut(s) | 985 |
| Bsp13I | TCCGGA | 1 cut(s) | 241 |
| Bsp1407I | TGTACA | 1 cut(s) | 107 |
| Bsp19I | CCATGG | 1 cut(s) | 731 |
| BspACI | CCGC | 3 cut(s) | 221, 339, 878 |
| BspCNI | CTCAG | 2 cut(s) | 466, 626 |
| BspDI | ATCGAT | 1 cut(s) | 1156 |
| BspEI | TCCGGA | 1 cut(s) | 241 |
| BspFNI | CGCG | 2 cut(s) | 221, 878 |
| BspHI | TCATGA | 1 cut(s) | 985 |
| BspLI | GGNNCC | 1 cut(s) | 355 |
| BspPI | GGATC | 3 cut(s) | 442, 496, 779 |
| BspQI | GCTCTTC | 2 cut(s) | 1039, 1105 |
| BspT104I | TTCGAA | 4 cut(s) | 498, 666, 1103, 1109 |
| BsrFI | RCCGGY | 3 cut(s) | 356, 568, 907 |
| BsrGI | TGTACA | 1 cut(s) | 107 |
| BssAI | RCCGGY | 3 cut(s) | 356, 568, 907 |
| BssECI | CCNNGG | 1 cut(s) | 731 |
| BssNI | GRCGYC | 4 cut(s) | 86, 286, 308, 572 |
| BssT1I | CCWWGG | 1 cut(s) | 731 |
| Bst2UI | CCWGG | 1 cut(s) | 846 |
| Bst4CI | ACNGT | 5 cut(s) | 104, 176, 217, 504, 716 |
| Bst6I | CTCTTC | 5 cut(s) | 183, 462, 1039, 1072, 1105 |
| BstACI | GRCGYC | 4 cut(s) | 86, 286, 308, 572 |
| BstAUI | TGTACA | 1 cut(s) | 107 |
| BstBI | TTCGAA | 4 cut(s) | 498, 666, 1103, 1109 |
| BstDEI | CTNAG | 3 cut(s) | 449, 474, 613 |
| BstDSI | CCRYGG | 1 cut(s) | 731 |
| BstF5I | GGATG | 2 cut(s) | 831, 934 |
| BstFNI | CGCG | 2 cut(s) | 221, 878 |
| BstHHI | GCGC | 1 cut(s) | 647 |
| BstMAI | GTCTC | 1 cut(s) | 983 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 230, 644 |
| BstNI | CCWGG | 1 cut(s) | 846 |
| BstNSI | RCATGY | 1 cut(s) | 818 |
| BstSCI | CCNGG | 1 cut(s) | 844 |
| BstUI | CGCG | 2 cut(s) | 221, 878 |
| BstX2I | RGATCY | 7 cut(s) | 272, 293, 434, 477, 488, 554, 784 |
| BstYI | RGATCY | 7 cut(s) | 272, 293, 434, 477, 488, 554, 784 |
| Bsu15I | ATCGAT | 1 cut(s) | 1156 |
| BsuTUI | ATCGAT | 1 cut(s) | 1156 |
| BtgI | CCRYGG | 1 cut(s) | 731 |
| BtsCI | GGATG | 2 cut(s) | 831, 934 |
| CciI | TCATGA | 1 cut(s) | 985 |
| CfoI | GCGC | 1 cut(s) | 647 |
| Cfr10I | RCCGGY | 3 cut(s) | 356, 568, 907 |
| Cfr13I | GGNCC | 1 cut(s) | 956 |
| ClaI | ATCGAT | 1 cut(s) | 1156 |
| CseI | GACGC | 3 cut(s) | 149, 522, 561 |
| CsiI | ACCWGGT | 1 cut(s) | 844 |
| Csp6I | GTAC | 2 cut(s) | 108, 654 |
| CviAII | CATG | 3 cut(s) | 732, 815, 986 |
| CviQI | GTAC | 2 cut(s) | 108, 654 |
| DdeI | CTNAG | 3 cut(s) | 449, 474, 613 |
| Eam1104I | CTCTTC | 5 cut(s) | 183, 462, 1039, 1072, 1105 |
| EarI | CTCTTC | 5 cut(s) | 183, 462, 1039, 1072, 1105 |
| EciI | GGCGGA | 1 cut(s) | 354 |
| Ecl136II | GAGCTC | 1 cut(s) | 983 |
| Eco130I | CCWWGG | 1 cut(s) | 731 |
| Eco24I | GRGCYC | 1 cut(s) | 985 |
| Eco32I | GATATC | 1 cut(s) | 969 |
| Eco47I | GGWCC | 1 cut(s) | 956 |
| Eco53kI | GAGCTC | 1 cut(s) | 983 |
| Eco57I | CTGAAG | 1 cut(s) | 765 |
| EcoICRI | GAGCTC | 1 cut(s) | 983 |
| EcoRI | GAATTC | 2 cut(s) | 748, 1105 |
| EcoRII | CCWGG | 1 cut(s) | 844 |
| EcoRV | GATATC | 1 cut(s) | 969 |
| EcoT14I | CCWWGG | 1 cut(s) | 731 |
| EcoT38I | GRGCYC | 1 cut(s) | 985 |
| ErhI | CCWWGG | 1 cut(s) | 731 |
| FaeI | CATG | 3 cut(s) | 735, 818, 989 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 955, 987 |
| FatI | CATG | 3 cut(s) | 731, 814, 985 |
| FauI | CCCGC | 1 cut(s) | 871 |
| FbaI | TGATCA | 1 cut(s) | 1170 |
| Fnu4HI | GCNGC | 1 cut(s) | 222 |
| FokI | GGATG | 2 cut(s) | 838, 941 |
| FriOI | GRGCYC | 1 cut(s) | 985 |
| Fsp4HI | GCNGC | 1 cut(s) | 222 |
| FspBI | CTAG | 4 cut(s) | 15, 396, 600, 1143 |
| GlaI | GCGC | 1 cut(s) | 646 |
| GluI | GCNGC | 1 cut(s) | 222 |
| GsuI | CTGGAG | 1 cut(s) | 171 |
| HapII | CCGG | 9 cut(s) | 230, 242, 304, 320, 357, 569, 672, 908, 995 |
| HgaI | GACGC | 3 cut(s) | 149, 522, 561 |
| HhaI | GCGC | 1 cut(s) | 647 |
| Hin1I | GRCGYC | 4 cut(s) | 86, 286, 308, 572 |
| Hin1II | CATG | 3 cut(s) | 735, 818, 989 |
| Hin6I | GCGC | 1 cut(s) | 645 |
| HinP1I | GCGC | 1 cut(s) | 645 |
| HpaII | CCGG | 9 cut(s) | 230, 242, 304, 320, 357, 569, 672, 908, 995 |
| HphI | GGTGA | 5 cut(s) | 371, 395, 728, 905, 1148 |
| Hpy166II | GTNNAC | 4 cut(s) | 110, 654, 701, 938 |
| Hpy188I | TCNGA | 8 cut(s) | 36, 475, 525, 616, 747, 784, 1175, 1187 |
| Hpy188III | TCNNGA | 8 cut(s) | 15, 137, 242, 461, 481, 492, 686, 986 |
| Hpy8I | GTNNAC | 4 cut(s) | 110, 654, 701, 938 |
| Hpy99I | CGWCG | 7 cut(s) | 40, 88, 91, 221, 291, 408, 577 |
| HpyAV | CCTTC | 6 cut(s) | 374, 674, 789, 884, 947, 957 |
| HpyCH4III | ACNGT | 5 cut(s) | 104, 176, 217, 504, 716 |
| HpyCH4IV | ACGT | 3 cut(s) | 86, 286, 308 |
| HpyCH4V | TGCA | 1 cut(s) | 171 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 230, 644 |
| HpyF3I | CTNAG | 3 cut(s) | 449, 474, 613 |
| HpySE526I | ACGT | 3 cut(s) | 86, 286, 308 |
| Hsp92I | GRCGYC | 4 cut(s) | 86, 286, 308, 572 |
| Hsp92II | CATG | 3 cut(s) | 735, 818, 989 |
| HspAI | GCGC | 1 cut(s) | 645 |
| Kpn2I | TCCGGA | 1 cut(s) | 241 |
| Ksp22I | TGATCA | 1 cut(s) | 1170 |
| LguI | GCTCTTC | 2 cut(s) | 1039, 1105 |
| LmnI | GCTCC | 2 cut(s) | 353, 389 |
| LweI | GCATC | 1 cut(s) | 681 |
| MabI | ACCWGGT | 1 cut(s) | 844 |
| MaeI | CTAG | 4 cut(s) | 15, 396, 600, 1143 |
| MaeII | ACGT | 3 cut(s) | 86, 286, 308 |
| MaeIII | GTNAC | 5 cut(s) | 98, 383, 504, 539, 774 |
| MfeI | CAATTG | 1 cut(s) | 515 |
| MflI | RGATCY | 7 cut(s) | 272, 293, 434, 477, 488, 554, 784 |
| MhlI | GDGCHC | 1 cut(s) | 985 |
| MluCI | AATT | 7 cut(s) | 10, 208, 279, 515, 640, 748, 1105 |
| MlyI | GAGTC | 5 cut(s) | 70, 162, 232, 529, 612 |
| MmeI | TCCRAC | 2 cut(s) | 59, 817 |
| MnlI | CCTC | 8 cut(s) | 253, 335, 338, 341, 344, 465, 652, 891 |
| MroI | TCCGGA | 1 cut(s) | 241 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1063 |
| MseI | TTAA | 2 cut(s) | 315, 873 |
| MspI | CCGG | 9 cut(s) | 230, 242, 304, 320, 357, 569, 672, 908, 995 |
| MspR9I | CCNGG | 1 cut(s) | 846 |
| MunI | CAATTG | 1 cut(s) | 515 |
| MvaI | CCWGG | 1 cut(s) | 846 |
| MvnI | CGCG | 2 cut(s) | 221, 878 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 230, 644 |
| NcoI | CCATGG | 1 cut(s) | 731 |
| NlaIII | CATG | 3 cut(s) | 735, 818, 989 |
| NlaIV | GGNNCC | 1 cut(s) | 355 |
| NmuCI | GTSAC | 1 cut(s) | 383 |
| NspI | RCATGY | 1 cut(s) | 818 |
| NspV | TTCGAA | 4 cut(s) | 498, 666, 1103, 1109 |
| PagI | TCATGA | 1 cut(s) | 985 |
| PciSI | GCTCTTC | 2 cut(s) | 1039, 1105 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 80, 581 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1063 |
| PflFI | GACNNNGTC | 1 cut(s) | 1089 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1094 |
| PkrI | GCNGC | 1 cut(s) | 223 |
| PleI | GAGTC | 5 cut(s) | 70, 161, 232, 528, 611 |
| PpsI | GAGTC | 5 cut(s) | 70, 161, 232, 528, 611 |
| Psp124BI | GAGCTC | 1 cut(s) | 985 |
| Psp6I | CCWGG | 1 cut(s) | 844 |
| PspGI | CCWGG | 1 cut(s) | 844 |
| PspN4I | GGNNCC | 1 cut(s) | 355 |
| PspPI | GGNCC | 1 cut(s) | 956 |
| PsuI | RGATCY | 7 cut(s) | 272, 293, 434, 477, 488, 554, 784 |
| PsyI | GACNNNGTC | 1 cut(s) | 1089 |
| RsaI | GTAC | 2 cut(s) | 109, 655 |
| RsaNI | GTAC | 2 cut(s) | 108, 654 |
| SacI | GAGCTC | 1 cut(s) | 985 |
| SapI | GCTCTTC | 2 cut(s) | 1039, 1105 |
| SaqAI | TTAA | 2 cut(s) | 315, 873 |
| SatI | GCNGC | 1 cut(s) | 222 |
| Sau96I | GGNCC | 1 cut(s) | 956 |
| SchI | GAGTC | 5 cut(s) | 70, 162, 232, 529, 612 |
| ScrFI | CCNGG | 1 cut(s) | 846 |
| SduI | GDGCHC | 1 cut(s) | 985 |
| SexAI | ACCWGGT | 1 cut(s) | 844 |
| SfaNI | GCATC | 1 cut(s) | 681 |
| SfuI | TTCGAA | 4 cut(s) | 498, 666, 1103, 1109 |
| SgrAI | CRCCGGYG | 1 cut(s) | 568 |
| SinI | GGWCC | 1 cut(s) | 956 |
| Sse9I | AATT | 7 cut(s) | 10, 208, 279, 515, 640, 748, 1105 |
| SsiI | CCGC | 3 cut(s) | 221, 339, 878 |
| SspMI | CTAG | 4 cut(s) | 15, 396, 600, 1143 |
| SstI | GAGCTC | 1 cut(s) | 985 |
| StyD4I | CCNGG | 1 cut(s) | 844 |
| StyI | CCWWGG | 1 cut(s) | 731 |
| TaaI | ACNGT | 5 cut(s) | 104, 176, 217, 504, 716 |
| TaiI | ACGT | 3 cut(s) | 89, 289, 311 |
| TaqII | GACCGA | 1 cut(s) | 973 |
| TasI | AATT | 7 cut(s) | 10, 208, 279, 515, 640, 748, 1105 |
| TatI | WGTACW | 1 cut(s) | 107 |
| TauI | GCSGC | 1 cut(s) | 224 |
| Tru1I | TTAA | 2 cut(s) | 315, 873 |
| Tru9I | TTAA | 2 cut(s) | 315, 873 |
| TseFI | GTSAC | 1 cut(s) | 383 |
| Tsp45I | GTSAC | 1 cut(s) | 383 |
| TspDTI | ATGAA | 5 cut(s) | 106, 172, 819, 966, 1166 |
| TspGWI | ACGGA | 5 cut(s) | 402, 558, 671, 811, 935 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1089 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1094 |
| VpaK11BI | GGWCC | 1 cut(s) | 956 |
| XapI | RAATTY | 3 cut(s) | 10, 748, 1105 |
| XbaI | TCTAGA | 1 cut(s) | 14 |
| XceI | RCATGY | 1 cut(s) | 818 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1063 |
| XspI | CTAG | 4 cut(s) | 15, 396, 600, 1143 |
| ZraI | GACGTC | 3 cut(s) | 87, 287, 309 |