Zinc finger (C3HC4-type RING finger) family protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Zn_ribbon_19 | PF14369 | 17 - 54 | 5.1e-13 | zinc-ribbon |
| zf-rbx1 | PF12678 | 191 - 240 | 9.3e-07 | RING-H2 zinc finger domain |
| zf-RING_2 | PF13639 | 198 - 240 | 1.6e-12 | Ring finger domain |
| zf-C3HC4_2 | PF13923 | 198 - 239 | 2.3e-08 | Zinc finger, C3HC4 type (RING finger) |
| zf-RING_11 | PF17123 | 198 - 226 | 2.7e-07 | RING-like zinc finger |
| zf-C3HC4 | PF00097 | 199 - 239 | 1.5e-07 | Zinc finger, C3HC4 type (RING finger) |
| DUF1117 | PF06547 | 260 - 391 | 1.6e-37 | Protein of unknown function (DUF1117) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 308 |
| AccBSI | CCGCTC | 1 cut(s) | 454 |
| AccII | CGCG | 3 cut(s) | 73, 360, 637 |
| AccIII | TCCGGA | 2 cut(s) | 389, 412 |
| AciI | CCGC | 6 cut(s) | 144, 177, 180, 344, 407, 454 |
| AclWI | GGATC | 7 cut(s) | 234, 255, 381, 394, 400, 448, 935 |
| AcsI | RAATTY | 1 cut(s) | 1153 |
| AcuI | CTGAAG | 4 cut(s) | 231, 717, 1159, 1194 |
| AcyI | GRCGYC | 4 cut(s) | 20, 253, 309, 524 |
| AfaI | GTAC | 5 cut(s) | 70, 297, 681, 952, 976 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 809, 825 |
| AflIII | ACRYGT | 1 cut(s) | 71 |
| AgsI | TTSAA | 4 cut(s) | 302, 464, 1117, 1124 |
| AjnI | CCWGG | 1 cut(s) | 909 |
| AluBI | AGCT | 5 cut(s) | 66, 469, 727, 1065, 1082 |
| AluI | AGCT | 5 cut(s) | 66, 469, 727, 1065, 1082 |
| Alw26I | GTCTC | 5 cut(s) | 614, 620, 790, 840, 1045 |
| AlwI | GGATC | 7 cut(s) | 234, 255, 381, 394, 400, 448, 935 |
| Aor13HI | TCCGGA | 2 cut(s) | 389, 412 |
| ApeKI | GCWGC | 2 cut(s) | 836, 1082 |
| ApoI | RAATTY | 1 cut(s) | 1153 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 691, 723 |
| AspLEI | GCGC | 4 cut(s) | 311, 362, 599, 637 |
| AspS9I | GGNCC | 1 cut(s) | 917 |
| AsuC2I | CCSGG | 1 cut(s) | 804 |
| AsuII | TTCGAA | 1 cut(s) | 697 |
| AvaII | GGWCC | 1 cut(s) | 917 |
| BamHI | GGATCC | 1 cut(s) | 386 |
| BanI | GGYRCC | 1 cut(s) | 308 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1054, 1086 |
| BbsI | GAAGAC | 1 cut(s) | 1200 |
| BbvI | GCAGC | 2 cut(s) | 848, 1069 |
| BccI | CCATC | 4 cut(s) | 430, 881, 908, 1009 |
| BceAI | ACGGC | 5 cut(s) | 60, 157, 631, 761, 803 |
| BciT130I | CCWGG | 1 cut(s) | 911 |
| BclI | TGATCA | 1 cut(s) | 94 |
| BcnI | CCSGG | 1 cut(s) | 804 |
| BcoDI | GTCTC | 5 cut(s) | 614, 620, 790, 840, 1045 |
| BfaI | CTAG | 4 cut(s) | 348, 552, 921, 1134 |
| BfoI | RGCGCY | 1 cut(s) | 312 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 579 |
| BglII | AGATCT | 2 cut(s) | 429, 506 |
| BisI | GCNGC | 4 cut(s) | 180, 345, 837, 1083 |
| BlpI | GCTNAGC | 1 cut(s) | 470 |
| BlsI | GCNGC | 4 cut(s) | 181, 346, 838, 1084 |
| Bme1390I | CCNGG | 2 cut(s) | 804, 911 |
| Bme18I | GGWCC | 1 cut(s) | 917 |
| BmgT120I | GGNCC | 1 cut(s) | 917 |
| BmiI | GGNNCC | 4 cut(s) | 310, 388, 988, 994 |
| BmrFI | CCNGG | 2 cut(s) | 804, 911 |
| BmsI | GCATC | 3 cut(s) | 331, 633, 684 |
| BpiI | GAAGAC | 1 cut(s) | 1200 |
| Bpu10I | CCTNAGC | 1 cut(s) | 982 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 470 |
| Bpu14I | TTCGAA | 1 cut(s) | 697 |
| BpuMI | CCSGG | 1 cut(s) | 804 |
| Bsa29I | ATCGAT | 2 cut(s) | 221, 692 |
| BsaBI | GATNNNNATC | 1 cut(s) | 391 |
| BsaHI | GRCGYC | 4 cut(s) | 20, 253, 309, 524 |
| BsaI | GGTCTC | 1 cut(s) | 1045 |
| BsaJI | CCNNGG | 2 cut(s) | 683, 777 |
| BsaWI | WCCGGW | 5 cut(s) | 263, 286, 389, 412, 995 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 250, 280, 843, 873 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 809, 825 |
| Bse118I | RCCGGY | 1 cut(s) | 311 |
| Bse1I | ACTGG | 3 cut(s) | 499, 866, 982 |
| Bse3DI | GCAATG | 1 cut(s) | 846 |
| Bse8I | GATNNNNATC | 1 cut(s) | 391 |
| BseAI | TCCGGA | 2 cut(s) | 389, 412 |
| BseBI | CCWGG | 1 cut(s) | 911 |
| BseCI | ATCGAT | 2 cut(s) | 221, 692 |
| BseDI | CCNNGG | 2 cut(s) | 683, 777 |
| BseGI | GGATG | 4 cut(s) | 789, 892, 919, 1020 |
| BseJI | GATNNNNATC | 1 cut(s) | 391 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 809, 825 |
| BseMI | GCAATG | 1 cut(s) | 846 |
| BseMII | CTCAG | 2 cut(s) | 417, 996 |
| BseNI | ACTGG | 3 cut(s) | 499, 866, 982 |
| BseRI | GAGGAG | 3 cut(s) | 779, 1024, 1057 |
| BseXI | GCAGC | 2 cut(s) | 848, 1069 |
| BsgI | GTGCAG | 1 cut(s) | 736 |
| Bsh1236I | CGCG | 3 cut(s) | 73, 360, 637 |
| Bsh1285I | CGRYCG | 1 cut(s) | 268 |
| BshNI | GGYRCC | 1 cut(s) | 308 |
| BshVI | ATCGAT | 2 cut(s) | 221, 692 |
| BsiEI | CGRYCG | 1 cut(s) | 268 |
| BslFI | GGGAC | 1 cut(s) | 693 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 809, 825 |
| BsmAI | GTCTC | 5 cut(s) | 614, 620, 790, 840, 1045 |
| BsmBI | CGTCTC | 3 cut(s) | 614, 620, 840 |
| BsmFI | GGGAC | 1 cut(s) | 693 |
| Bso31I | GGTCTC | 1 cut(s) | 1045 |
| Bsp119I | TTCGAA | 1 cut(s) | 697 |
| Bsp13I | TCCGGA | 2 cut(s) | 389, 412 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 470 |
| BspACI | CCGC | 6 cut(s) | 144, 177, 180, 344, 407, 454 |
| BspCNI | CTCAG | 2 cut(s) | 418, 995 |
| BspDI | ATCGAT | 2 cut(s) | 221, 692 |
| BspEI | TCCGGA | 2 cut(s) | 389, 412 |
| BspFNI | CGCG | 3 cut(s) | 73, 360, 637 |
| BspLI | GGNNCC | 4 cut(s) | 310, 388, 988, 994 |
| BspPI | GGATC | 7 cut(s) | 234, 255, 381, 394, 400, 448, 935 |
| BspQI | GCTCTTC | 1 cut(s) | 1072 |
| BspT104I | TTCGAA | 1 cut(s) | 697 |
| BspT107I | GGYRCC | 1 cut(s) | 308 |
| BspTNI | GGTCTC | 1 cut(s) | 1045 |
| BsrBI | CCGCTC | 1 cut(s) | 454 |
| BsrDI | GCAATG | 1 cut(s) | 846 |
| BsrFI | RCCGGY | 1 cut(s) | 311 |
| BsrI | ACTGG | 3 cut(s) | 499, 866, 982 |
| BssAI | RCCGGY | 1 cut(s) | 311 |
| BssECI | CCNNGG | 2 cut(s) | 683, 777 |
| BssNI | GRCGYC | 4 cut(s) | 20, 253, 309, 524 |
| Bst2UI | CCWGG | 1 cut(s) | 911 |
| Bst4CI | ACNGT | 6 cut(s) | 112, 236, 684, 950, 974, 1061 |
| Bst6I | CTCTTC | 2 cut(s) | 318, 1072 |
| BstACI | GRCGYC | 4 cut(s) | 20, 253, 309, 524 |
| BstBI | TTCGAA | 1 cut(s) | 697 |
| BstC8I | GCNNGC | 2 cut(s) | 127, 313 |
| BstDEI | CTNAG | 4 cut(s) | 401, 426, 470, 982 |
| BstDSI | CCRYGG | 2 cut(s) | 683, 777 |
| BstF5I | GGATG | 4 cut(s) | 789, 892, 919, 1020 |
| BstFNI | CGCG | 3 cut(s) | 73, 360, 637 |
| BstH2I | RGCGCY | 1 cut(s) | 312 |
| BstHHI | GCGC | 4 cut(s) | 311, 362, 599, 637 |
| BstMAI | GTCTC | 5 cut(s) | 614, 620, 790, 840, 1045 |
| BstMCI | CGRYCG | 1 cut(s) | 268 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 10, 19, 126, 135, 579, 596, 603, 643 |
| BstNI | CCWGG | 1 cut(s) | 911 |
| BstSCI | CCNGG | 2 cut(s) | 802, 909 |
| BstUI | CGCG | 3 cut(s) | 73, 360, 637 |
| BstV1I | GCAGC | 2 cut(s) | 848, 1069 |
| BstV2I | GAAGAC | 1 cut(s) | 1200 |
| BstX2I | RGATCY | 7 cut(s) | 239, 260, 386, 429, 440, 506, 927 |
| BstYI | RGATCY | 7 cut(s) | 239, 260, 386, 429, 440, 506, 927 |
| Bsu15I | ATCGAT | 2 cut(s) | 221, 692 |
| BsuTUI | ATCGAT | 2 cut(s) | 221, 692 |
| BtgI | CCRYGG | 2 cut(s) | 683, 777 |
| BtsCI | GGATG | 4 cut(s) | 789, 892, 919, 1020 |
| BtsI | GCAGTG | 1 cut(s) | 133 |
| BtsIMutI | CAGTG | 3 cut(s) | 133, 873, 1164 |
| Cac8I | GCNNGC | 2 cut(s) | 127, 313 |
| CfoI | GCGC | 4 cut(s) | 311, 362, 599, 637 |
| Cfr10I | RCCGGY | 1 cut(s) | 311 |
| Cfr13I | GGNCC | 1 cut(s) | 917 |
| ClaI | ATCGAT | 2 cut(s) | 221, 692 |
| CseI | GACGC | 6 cut(s) | 28, 109, 261, 366, 474, 513 |
| Csp6I | GTAC | 5 cut(s) | 69, 296, 680, 951, 975 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 653, 688 |
| CviAII | CATG | 1 cut(s) | 933 |
| CviQI | GTAC | 5 cut(s) | 69, 296, 680, 951, 975 |
| DdeI | CTNAG | 4 cut(s) | 401, 426, 470, 982 |
| DinI | GGCGCC | 1 cut(s) | 310 |
| Eam1104I | CTCTTC | 2 cut(s) | 318, 1072 |
| EarI | CTCTTC | 2 cut(s) | 318, 1072 |
| EciI | GGCGGA | 1 cut(s) | 166 |
| Eco31I | GGTCTC | 1 cut(s) | 1045 |
| Eco32I | GATATC | 1 cut(s) | 1089 |
| Eco47I | GGWCC | 1 cut(s) | 917 |
| Eco57I | CTGAAG | 4 cut(s) | 231, 717, 1159, 1194 |
| EcoRII | CCWGG | 1 cut(s) | 909 |
| EcoRV | GATATC | 1 cut(s) | 1089 |
| EgeI | GGCGCC | 1 cut(s) | 310 |
| EheI | GGCGCC | 1 cut(s) | 310 |
| Esp3I | CGTCTC | 3 cut(s) | 614, 620, 840 |
| FaeI | CATG | 1 cut(s) | 936 |
| FaiI | YATR | 2 cut(s) | 578, 934 |
| FaqI | GGGAC | 1 cut(s) | 693 |
| FatI | CATG | 1 cut(s) | 932 |
| FbaI | TGATCA | 1 cut(s) | 94 |
| Fnu4HI | GCNGC | 4 cut(s) | 180, 345, 837, 1083 |
| FokI | GGATG | 4 cut(s) | 796, 899, 926, 1027 |
| Fsp4HI | GCNGC | 4 cut(s) | 180, 345, 837, 1083 |
| FspBI | CTAG | 4 cut(s) | 348, 552, 921, 1134 |
| GlaI | GCGC | 4 cut(s) | 310, 361, 598, 636 |
| GluI | GCNGC | 4 cut(s) | 180, 345, 837, 1083 |
| HaeII | RGCGCY | 1 cut(s) | 312 |
| HgaI | GACGC | 6 cut(s) | 28, 109, 261, 366, 474, 513 |
| HhaI | GCGC | 4 cut(s) | 311, 362, 599, 637 |
| Hin1I | GRCGYC | 4 cut(s) | 20, 253, 309, 524 |
| Hin1II | CATG | 1 cut(s) | 936 |
| Hin6I | GCGC | 4 cut(s) | 309, 360, 597, 635 |
| HinP1I | GCGC | 4 cut(s) | 309, 360, 597, 635 |
| HincII | GTYRAC | 2 cut(s) | 9, 876 |
| HindII | GTYRAC | 2 cut(s) | 9, 876 |
| HpaI | GTTAAC | 1 cut(s) | 876 |
| Hpy166II | GTNNAC | 4 cut(s) | 9, 653, 876, 953 |
| Hpy188I | TCNGA | 7 cut(s) | 427, 568, 586, 736, 964, 1102, 1178 |
| Hpy188III | TCNNGA | 7 cut(s) | 390, 413, 433, 444, 510, 619, 1109 |
| Hpy8I | GTNNAC | 4 cut(s) | 9, 653, 876, 953 |
| HpyAV | CCTTC | 2 cut(s) | 329, 741 |
| HpyCH4III | ACNGT | 6 cut(s) | 112, 236, 684, 950, 974, 1061 |
| HpyCH4V | TGCA | 3 cut(s) | 606, 675, 717 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 10, 19, 126, 135, 579, 596, 603, 643 |
| HpyF3I | CTNAG | 4 cut(s) | 401, 426, 470, 982 |
| Hsp92I | GRCGYC | 4 cut(s) | 20, 253, 309, 524 |
| Hsp92II | CATG | 1 cut(s) | 936 |
| HspAI | GCGC | 4 cut(s) | 309, 360, 597, 635 |
| KasI | GGCGCC | 1 cut(s) | 308 |
| Kpn2I | TCCGGA | 2 cut(s) | 389, 412 |
| KroI | GCCGGC | 1 cut(s) | 311 |
| KroNI | GCCGGC | 1 cut(s) | 313 |
| Ksp22I | TGATCA | 1 cut(s) | 94 |
| KspAI | GTTAAC | 1 cut(s) | 876 |
| LguI | GCTCTTC | 1 cut(s) | 1072 |
| LmnI | GCTCC | 2 cut(s) | 750, 998 |
| Lsp1109I | GCAGC | 2 cut(s) | 848, 1069 |
| LweI | GCATC | 3 cut(s) | 331, 633, 684 |
| MaeI | CTAG | 4 cut(s) | 348, 552, 921, 1134 |
| MaeIII | GTNAC | 5 cut(s) | 59, 456, 942, 968, 1190 |
| MbiI | CCGCTC | 1 cut(s) | 454 |
| MflI | RGATCY | 7 cut(s) | 239, 260, 386, 429, 440, 506, 927 |
| MluCI | AATT | 4 cut(s) | 188, 498, 592, 1153 |
| MluI | ACGCGT | 1 cut(s) | 71 |
| Mly113I | GGCGCC | 1 cut(s) | 309 |
| MlyI | GAGTC | 2 cut(s) | 551, 564 |
| MreI | CGCCGGCG | 1 cut(s) | 311 |
| MroI | TCCGGA | 2 cut(s) | 389, 412 |
| MroNI | GCCGGC | 1 cut(s) | 311 |
| MseI | TTAA | 6 cut(s) | 162, 191, 282, 831, 875, 1037 |
| MspA1I | CMGCKG | 2 cut(s) | 66, 1082 |
| MspR9I | CCNGG | 2 cut(s) | 804, 911 |
| MvaI | CCWGG | 1 cut(s) | 911 |
| MvnI | CGCG | 3 cut(s) | 73, 360, 637 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 10, 19, 126, 135, 579, 596, 603, 643 |
| NaeI | GCCGGC | 1 cut(s) | 313 |
| NarI | GGCGCC | 1 cut(s) | 309 |
| NciI | CCSGG | 1 cut(s) | 804 |
| NgoMIV | GCCGGC | 1 cut(s) | 311 |
| NlaIII | CATG | 1 cut(s) | 936 |
| NlaIV | GGNNCC | 4 cut(s) | 310, 388, 988, 994 |
| NmuCI | GTSAC | 1 cut(s) | 942 |
| NspV | TTCGAA | 1 cut(s) | 697 |
| PciSI | GCTCTTC | 1 cut(s) | 1072 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 675, 954 |
| PdiI | GCCGGC | 1 cut(s) | 313 |
| PkrI | GCNGC | 4 cut(s) | 181, 346, 838, 1084 |
| PleI | GAGTC | 2 cut(s) | 550, 563 |
| PluTI | GGCGCC | 1 cut(s) | 312 |
| PpsI | GAGTC | 2 cut(s) | 550, 563 |
| Psp6I | CCWGG | 1 cut(s) | 909 |
| PspGI | CCWGG | 1 cut(s) | 909 |
| PspN4I | GGNNCC | 4 cut(s) | 310, 388, 988, 994 |
| PspPI | GGNCC | 1 cut(s) | 917 |
| PsuI | RGATCY | 7 cut(s) | 239, 260, 386, 429, 440, 506, 927 |
| PvuII | CAGCTG | 2 cut(s) | 66, 1082 |
| RsaI | GTAC | 5 cut(s) | 70, 297, 681, 952, 976 |
| RsaNI | GTAC | 5 cut(s) | 69, 296, 680, 951, 975 |
| SapI | GCTCTTC | 1 cut(s) | 1072 |
| SaqAI | TTAA | 6 cut(s) | 162, 191, 282, 831, 875, 1037 |
| SatI | GCNGC | 4 cut(s) | 180, 345, 837, 1083 |
| Sau96I | GGNCC | 1 cut(s) | 917 |
| SchI | GAGTC | 2 cut(s) | 551, 564 |
| ScrFI | CCNGG | 2 cut(s) | 804, 911 |
| SfaNI | GCATC | 3 cut(s) | 331, 633, 684 |
| SfoI | GGCGCC | 1 cut(s) | 310 |
| SfuI | TTCGAA | 1 cut(s) | 697 |
| SgrAI | CRCCGGYG | 1 cut(s) | 311 |
| SinI | GGWCC | 1 cut(s) | 917 |
| Sse9I | AATT | 4 cut(s) | 188, 498, 592, 1153 |
| SsiI | CCGC | 6 cut(s) | 144, 177, 180, 344, 407, 454 |
| SspDI | GGCGCC | 1 cut(s) | 308 |
| SspMI | CTAG | 4 cut(s) | 348, 552, 921, 1134 |
| StyD4I | CCNGG | 2 cut(s) | 802, 909 |
| TaaI | ACNGT | 6 cut(s) | 112, 236, 684, 950, 974, 1061 |
| TasI | AATT | 4 cut(s) | 188, 498, 592, 1153 |
| TauI | GCSGC | 2 cut(s) | 182, 347 |
| Tru1I | TTAA | 6 cut(s) | 162, 191, 282, 831, 875, 1037 |
| Tru9I | TTAA | 6 cut(s) | 162, 191, 282, 831, 875, 1037 |
| TscAI | CASTG | 3 cut(s) | 140, 873, 1164 |
| TseFI | GTSAC | 1 cut(s) | 942 |
| TseI | GCWGC | 2 cut(s) | 836, 1082 |
| Tsp45I | GTSAC | 1 cut(s) | 942 |
| TspDTI | ATGAA | 2 cut(s) | 1065, 1208 |
| TspGWI | ACGGA | 9 cut(s) | 232, 264, 399, 623, 638, 644, 763, 864, 940 |
| TspRI | CASTG | 3 cut(s) | 140, 873, 1164 |
| VpaK11BI | GGWCC | 1 cut(s) | 917 |
| XapI | RAATTY | 1 cut(s) | 1153 |
| XspI | CTAG | 4 cut(s) | 348, 552, 921, 1134 |