AT5G59550

Zinc finger (C3HC4-type RING finger) family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
23998164 .. 24000166
2003 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G59550.1

Sequence Viewer

Length: 1224 bp
ATGCCGTCAACGCCGACGACGCCGACTACAACAACGCCGATCACGGCTTCGTATTGGTGTTACAGCTGTACGCGTTTCGTCAGCGTTTGGGCTGATCAAGGCACAACAACCGTCGGTAGCGTCGCTTGCCCTCACTGCGACGGCGGTTTTATCGAACAGATTAACGATTCTTCCTCCGCCGCTACCGAATTAACGATTCCGGCTTCTACTGAAGTAAGATCGATCAATAACAACCGTAGATCCGTGATTAGACGCCGGAGATCCGGTCGTCGTCCGTCCTTTAATCCGGTCATCGTACTTCAAGGAGGCGCCGGCGAGAGAGAAGAGGGAGAAGAAGGAGATGCGGCTAGAGATCGACGCGCTTTTGAGTTTTATTACGATGACGGATCCGGATCGGGTCTTAGACCGCTTCCGGATTCTGTATCTGAGATCTTGATGGGATCTGGATTCGAGCGGTTACTTGAACAGCTAAGCCAAATCGAAGCGTCGGCTACTGGAATTGGTAGATCTGGAAACCCTCCGGCGTCTAAATCGGCGATTGAGTCTTTACCTAGAGTCGAAATCTCGGATTGCCACATAGGCTCGGAGGCTAATTGCGCTGTTTGCACGGAGATTTTCGAGACGGAGACGGAGGCGCGTGAGATGCCGTGTAAACACCTTTTCCACGACGATTGCATCGTACCGTGGCTATCGATTCGAAACTCTTGTCCCGTGTGCAGATTCGAGCTACCTTCAGAGCCTAATCGACGGAGCAACAACAACGAGGAGGATAACGCCGTGGGGATGACGATTTGGAGACTTCCCGGTGGTGGATTCGCCGTAGGGAGGTTTAACGCAGCAATGAGAGACGGAGAGAGAGTTTTGCCAGTGGTGTTAACAGAAATGGATGGTGGTGGGATTGGTAATAGCCAGGATGGTCCTAGACGGATCTCATGGGTTAGGTCACACGGTACACTCGAATCGGATAGTAACGGTACTGGCTCAGGTTCCGGCTCCGGTGGAAGATTGAGGAGGATGGTTCGTGGAATGGTGTCGTTAATGAGGAGAGTGAGACCAAACCGTAGCTCTTCTTCTTCATCAGCTGCGATATCAACTTCTTCTGATAATCTGGATTTGAACATTGAAGTAGAATCTAGGGTTTTGGATAGGTCAAATTCAGTGATGAGAAGATACTTCAGAAGAAACAGAAGTAACAGGGATTCTTCGTCTTCAGTTCTTCATTGA

Protein Analysis

407

Amino Acids

44.38

Weight (kDa)

6.36

Isoelectric Point (pI)

79.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_19 PF14369 17 - 54 5.1e-13 zinc-ribbon
zf-rbx1 PF12678 191 - 240 9.3e-07 RING-H2 zinc finger domain
zf-RING_2 PF13639 198 - 240 1.6e-12 Ring finger domain
zf-C3HC4_2 PF13923 198 - 239 2.3e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 198 - 226 2.7e-07 RING-like zinc finger
zf-C3HC4 PF00097 199 - 239 1.5e-07 Zinc finger, C3HC4 type (RING finger)
DUF1117 PF06547 260 - 391 1.6e-37 Protein of unknown function (DUF1117)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 308
AccBSI CCGCTC 1 cut(s) 454
AccII CGCG 3 cut(s) 73, 360, 637
AccIII TCCGGA 2 cut(s) 389, 412
AciI CCGC 6 cut(s) 144, 177, 180, 344, 407, 454
AclWI GGATC 7 cut(s) 234, 255, 381, 394, 400, 448, 935
AcsI RAATTY 1 cut(s) 1153
AcuI CTGAAG 4 cut(s) 231, 717, 1159, 1194
AcyI GRCGYC 4 cut(s) 20, 253, 309, 524
AfaI GTAC 5 cut(s) 70, 297, 681, 952, 976
AfiI CCNNNNNNNGG 2 cut(s) 809, 825
AflIII ACRYGT 1 cut(s) 71
AgsI TTSAA 4 cut(s) 302, 464, 1117, 1124
AjnI CCWGG 1 cut(s) 909
AluBI AGCT 5 cut(s) 66, 469, 727, 1065, 1082
AluI AGCT 5 cut(s) 66, 469, 727, 1065, 1082
Alw26I GTCTC 5 cut(s) 614, 620, 790, 840, 1045
AlwI GGATC 7 cut(s) 234, 255, 381, 394, 400, 448, 935
Aor13HI TCCGGA 2 cut(s) 389, 412
ApeKI GCWGC 2 cut(s) 836, 1082
ApoI RAATTY 1 cut(s) 1153
ArsI GACNNNNNNTTYG 2 cut(s) 691, 723
AspLEI GCGC 4 cut(s) 311, 362, 599, 637
AspS9I GGNCC 1 cut(s) 917
AsuC2I CCSGG 1 cut(s) 804
AsuII TTCGAA 1 cut(s) 697
AvaII GGWCC 1 cut(s) 917
BamHI GGATCC 1 cut(s) 386
BanI GGYRCC 1 cut(s) 308
BarI GAAGNNNNNNTAC 2 cut(s) 1054, 1086
BbsI GAAGAC 1 cut(s) 1200
BbvI GCAGC 2 cut(s) 848, 1069
BccI CCATC 4 cut(s) 430, 881, 908, 1009
BceAI ACGGC 5 cut(s) 60, 157, 631, 761, 803
BciT130I CCWGG 1 cut(s) 911
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 1 cut(s) 804
BcoDI GTCTC 5 cut(s) 614, 620, 790, 840, 1045
BfaI CTAG 4 cut(s) 348, 552, 921, 1134
BfoI RGCGCY 1 cut(s) 312
BglI GCCNNNNNGGC 1 cut(s) 579
BglII AGATCT 2 cut(s) 429, 506
BisI GCNGC 4 cut(s) 180, 345, 837, 1083
BlpI GCTNAGC 1 cut(s) 470
BlsI GCNGC 4 cut(s) 181, 346, 838, 1084
Bme1390I CCNGG 2 cut(s) 804, 911
Bme18I GGWCC 1 cut(s) 917
BmgT120I GGNCC 1 cut(s) 917
BmiI GGNNCC 4 cut(s) 310, 388, 988, 994
BmrFI CCNGG 2 cut(s) 804, 911
BmsI GCATC 3 cut(s) 331, 633, 684
BpiI GAAGAC 1 cut(s) 1200
Bpu10I CCTNAGC 1 cut(s) 982
Bpu1102I GCTNAGC 1 cut(s) 470
Bpu14I TTCGAA 1 cut(s) 697
BpuMI CCSGG 1 cut(s) 804
Bsa29I ATCGAT 2 cut(s) 221, 692
BsaBI GATNNNNATC 1 cut(s) 391
BsaHI GRCGYC 4 cut(s) 20, 253, 309, 524
BsaI GGTCTC 1 cut(s) 1045
BsaJI CCNNGG 2 cut(s) 683, 777
BsaWI WCCGGW 5 cut(s) 263, 286, 389, 412, 995
BsaXI ACNNNNNCTCC 4 cut(s) 250, 280, 843, 873
Bsc4I CCNNNNNNNGG 2 cut(s) 809, 825
Bse118I RCCGGY 1 cut(s) 311
Bse1I ACTGG 3 cut(s) 499, 866, 982
Bse3DI GCAATG 1 cut(s) 846
Bse8I GATNNNNATC 1 cut(s) 391
BseAI TCCGGA 2 cut(s) 389, 412
BseBI CCWGG 1 cut(s) 911
BseCI ATCGAT 2 cut(s) 221, 692
BseDI CCNNGG 2 cut(s) 683, 777
BseGI GGATG 4 cut(s) 789, 892, 919, 1020
BseJI GATNNNNATC 1 cut(s) 391
BseLI CCNNNNNNNGG 2 cut(s) 809, 825
BseMI GCAATG 1 cut(s) 846
BseMII CTCAG 2 cut(s) 417, 996
BseNI ACTGG 3 cut(s) 499, 866, 982
BseRI GAGGAG 3 cut(s) 779, 1024, 1057
BseXI GCAGC 2 cut(s) 848, 1069
BsgI GTGCAG 1 cut(s) 736
Bsh1236I CGCG 3 cut(s) 73, 360, 637
Bsh1285I CGRYCG 1 cut(s) 268
BshNI GGYRCC 1 cut(s) 308
BshVI ATCGAT 2 cut(s) 221, 692
BsiEI CGRYCG 1 cut(s) 268
BslFI GGGAC 1 cut(s) 693
BslI CCNNNNNNNGG 2 cut(s) 809, 825
BsmAI GTCTC 5 cut(s) 614, 620, 790, 840, 1045
BsmBI CGTCTC 3 cut(s) 614, 620, 840
BsmFI GGGAC 1 cut(s) 693
Bso31I GGTCTC 1 cut(s) 1045
Bsp119I TTCGAA 1 cut(s) 697
Bsp13I TCCGGA 2 cut(s) 389, 412
Bsp1720I GCTNAGC 1 cut(s) 470
BspACI CCGC 6 cut(s) 144, 177, 180, 344, 407, 454
BspCNI CTCAG 2 cut(s) 418, 995
BspDI ATCGAT 2 cut(s) 221, 692
BspEI TCCGGA 2 cut(s) 389, 412
BspFNI CGCG 3 cut(s) 73, 360, 637
BspLI GGNNCC 4 cut(s) 310, 388, 988, 994
BspPI GGATC 7 cut(s) 234, 255, 381, 394, 400, 448, 935
BspQI GCTCTTC 1 cut(s) 1072
BspT104I TTCGAA 1 cut(s) 697
BspT107I GGYRCC 1 cut(s) 308
BspTNI GGTCTC 1 cut(s) 1045
BsrBI CCGCTC 1 cut(s) 454
BsrDI GCAATG 1 cut(s) 846
BsrFI RCCGGY 1 cut(s) 311
BsrI ACTGG 3 cut(s) 499, 866, 982
BssAI RCCGGY 1 cut(s) 311
BssECI CCNNGG 2 cut(s) 683, 777
BssNI GRCGYC 4 cut(s) 20, 253, 309, 524
Bst2UI CCWGG 1 cut(s) 911
Bst4CI ACNGT 6 cut(s) 112, 236, 684, 950, 974, 1061
Bst6I CTCTTC 2 cut(s) 318, 1072
BstACI GRCGYC 4 cut(s) 20, 253, 309, 524
BstBI TTCGAA 1 cut(s) 697
BstC8I GCNNGC 2 cut(s) 127, 313
BstDEI CTNAG 4 cut(s) 401, 426, 470, 982
BstDSI CCRYGG 2 cut(s) 683, 777
BstF5I GGATG 4 cut(s) 789, 892, 919, 1020
BstFNI CGCG 3 cut(s) 73, 360, 637
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 4 cut(s) 311, 362, 599, 637
BstMAI GTCTC 5 cut(s) 614, 620, 790, 840, 1045
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 8 cut(s) 10, 19, 126, 135, 579, 596, 603, 643
BstNI CCWGG 1 cut(s) 911
BstSCI CCNGG 2 cut(s) 802, 909
BstUI CGCG 3 cut(s) 73, 360, 637
BstV1I GCAGC 2 cut(s) 848, 1069
BstV2I GAAGAC 1 cut(s) 1200
BstX2I RGATCY 7 cut(s) 239, 260, 386, 429, 440, 506, 927
BstYI RGATCY 7 cut(s) 239, 260, 386, 429, 440, 506, 927
Bsu15I ATCGAT 2 cut(s) 221, 692
BsuTUI ATCGAT 2 cut(s) 221, 692
BtgI CCRYGG 2 cut(s) 683, 777
BtsCI GGATG 4 cut(s) 789, 892, 919, 1020
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 3 cut(s) 133, 873, 1164
Cac8I GCNNGC 2 cut(s) 127, 313
CfoI GCGC 4 cut(s) 311, 362, 599, 637
Cfr10I RCCGGY 1 cut(s) 311
Cfr13I GGNCC 1 cut(s) 917
ClaI ATCGAT 2 cut(s) 221, 692
CseI GACGC 6 cut(s) 28, 109, 261, 366, 474, 513
Csp6I GTAC 5 cut(s) 69, 296, 680, 951, 975
CspCI CAANNNNNGTGG 2 cut(s) 653, 688
CviAII CATG 1 cut(s) 933
CviQI GTAC 5 cut(s) 69, 296, 680, 951, 975
DdeI CTNAG 4 cut(s) 401, 426, 470, 982
DinI GGCGCC 1 cut(s) 310
Eam1104I CTCTTC 2 cut(s) 318, 1072
EarI CTCTTC 2 cut(s) 318, 1072
EciI GGCGGA 1 cut(s) 166
Eco31I GGTCTC 1 cut(s) 1045
Eco32I GATATC 1 cut(s) 1089
Eco47I GGWCC 1 cut(s) 917
Eco57I CTGAAG 4 cut(s) 231, 717, 1159, 1194
EcoRII CCWGG 1 cut(s) 909
EcoRV GATATC 1 cut(s) 1089
EgeI GGCGCC 1 cut(s) 310
EheI GGCGCC 1 cut(s) 310
Esp3I CGTCTC 3 cut(s) 614, 620, 840
FaeI CATG 1 cut(s) 936
FaiI YATR 2 cut(s) 578, 934
FaqI GGGAC 1 cut(s) 693
FatI CATG 1 cut(s) 932
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 4 cut(s) 180, 345, 837, 1083
FokI GGATG 4 cut(s) 796, 899, 926, 1027
Fsp4HI GCNGC 4 cut(s) 180, 345, 837, 1083
FspBI CTAG 4 cut(s) 348, 552, 921, 1134
GlaI GCGC 4 cut(s) 310, 361, 598, 636
GluI GCNGC 4 cut(s) 180, 345, 837, 1083
HaeII RGCGCY 1 cut(s) 312
HgaI GACGC 6 cut(s) 28, 109, 261, 366, 474, 513
HhaI GCGC 4 cut(s) 311, 362, 599, 637
Hin1I GRCGYC 4 cut(s) 20, 253, 309, 524
Hin1II CATG 1 cut(s) 936
Hin6I GCGC 4 cut(s) 309, 360, 597, 635
HinP1I GCGC 4 cut(s) 309, 360, 597, 635
HincII GTYRAC 2 cut(s) 9, 876
HindII GTYRAC 2 cut(s) 9, 876
HpaI GTTAAC 1 cut(s) 876
Hpy166II GTNNAC 4 cut(s) 9, 653, 876, 953
Hpy188I TCNGA 7 cut(s) 427, 568, 586, 736, 964, 1102, 1178
Hpy188III TCNNGA 7 cut(s) 390, 413, 433, 444, 510, 619, 1109
Hpy8I GTNNAC 4 cut(s) 9, 653, 876, 953
HpyAV CCTTC 2 cut(s) 329, 741
HpyCH4III ACNGT 6 cut(s) 112, 236, 684, 950, 974, 1061
HpyCH4V TGCA 3 cut(s) 606, 675, 717
HpyF10VI GCNNNNNNNGC 8 cut(s) 10, 19, 126, 135, 579, 596, 603, 643
HpyF3I CTNAG 4 cut(s) 401, 426, 470, 982
Hsp92I GRCGYC 4 cut(s) 20, 253, 309, 524
Hsp92II CATG 1 cut(s) 936
HspAI GCGC 4 cut(s) 309, 360, 597, 635
KasI GGCGCC 1 cut(s) 308
Kpn2I TCCGGA 2 cut(s) 389, 412
KroI GCCGGC 1 cut(s) 311
KroNI GCCGGC 1 cut(s) 313
Ksp22I TGATCA 1 cut(s) 94
KspAI GTTAAC 1 cut(s) 876
LguI GCTCTTC 1 cut(s) 1072
LmnI GCTCC 2 cut(s) 750, 998
Lsp1109I GCAGC 2 cut(s) 848, 1069
LweI GCATC 3 cut(s) 331, 633, 684
MaeI CTAG 4 cut(s) 348, 552, 921, 1134
MaeIII GTNAC 5 cut(s) 59, 456, 942, 968, 1190
MbiI CCGCTC 1 cut(s) 454
MflI RGATCY 7 cut(s) 239, 260, 386, 429, 440, 506, 927
MluCI AATT 4 cut(s) 188, 498, 592, 1153
MluI ACGCGT 1 cut(s) 71
Mly113I GGCGCC 1 cut(s) 309
MlyI GAGTC 2 cut(s) 551, 564
MreI CGCCGGCG 1 cut(s) 311
MroI TCCGGA 2 cut(s) 389, 412
MroNI GCCGGC 1 cut(s) 311
MseI TTAA 6 cut(s) 162, 191, 282, 831, 875, 1037
MspA1I CMGCKG 2 cut(s) 66, 1082
MspR9I CCNGG 2 cut(s) 804, 911
MvaI CCWGG 1 cut(s) 911
MvnI CGCG 3 cut(s) 73, 360, 637
MwoI GCNNNNNNNGC 8 cut(s) 10, 19, 126, 135, 579, 596, 603, 643
NaeI GCCGGC 1 cut(s) 313
NarI GGCGCC 1 cut(s) 309
NciI CCSGG 1 cut(s) 804
NgoMIV GCCGGC 1 cut(s) 311
NlaIII CATG 1 cut(s) 936
NlaIV GGNNCC 4 cut(s) 310, 388, 988, 994
NmuCI GTSAC 1 cut(s) 942
NspV TTCGAA 1 cut(s) 697
PciSI GCTCTTC 1 cut(s) 1072
PcsI WCGNNNNNNNCGW 2 cut(s) 675, 954
PdiI GCCGGC 1 cut(s) 313
PkrI GCNGC 4 cut(s) 181, 346, 838, 1084
PleI GAGTC 2 cut(s) 550, 563
PluTI GGCGCC 1 cut(s) 312
PpsI GAGTC 2 cut(s) 550, 563
Psp6I CCWGG 1 cut(s) 909
PspGI CCWGG 1 cut(s) 909
PspN4I GGNNCC 4 cut(s) 310, 388, 988, 994
PspPI GGNCC 1 cut(s) 917
PsuI RGATCY 7 cut(s) 239, 260, 386, 429, 440, 506, 927
PvuII CAGCTG 2 cut(s) 66, 1082
RsaI GTAC 5 cut(s) 70, 297, 681, 952, 976
RsaNI GTAC 5 cut(s) 69, 296, 680, 951, 975
SapI GCTCTTC 1 cut(s) 1072
SaqAI TTAA 6 cut(s) 162, 191, 282, 831, 875, 1037
SatI GCNGC 4 cut(s) 180, 345, 837, 1083
Sau96I GGNCC 1 cut(s) 917
SchI GAGTC 2 cut(s) 551, 564
ScrFI CCNGG 2 cut(s) 804, 911
SfaNI GCATC 3 cut(s) 331, 633, 684
SfoI GGCGCC 1 cut(s) 310
SfuI TTCGAA 1 cut(s) 697
SgrAI CRCCGGYG 1 cut(s) 311
SinI GGWCC 1 cut(s) 917
Sse9I AATT 4 cut(s) 188, 498, 592, 1153
SsiI CCGC 6 cut(s) 144, 177, 180, 344, 407, 454
SspDI GGCGCC 1 cut(s) 308
SspMI CTAG 4 cut(s) 348, 552, 921, 1134
StyD4I CCNGG 2 cut(s) 802, 909
TaaI ACNGT 6 cut(s) 112, 236, 684, 950, 974, 1061
TasI AATT 4 cut(s) 188, 498, 592, 1153
TauI GCSGC 2 cut(s) 182, 347
Tru1I TTAA 6 cut(s) 162, 191, 282, 831, 875, 1037
Tru9I TTAA 6 cut(s) 162, 191, 282, 831, 875, 1037
TscAI CASTG 3 cut(s) 140, 873, 1164
TseFI GTSAC 1 cut(s) 942
TseI GCWGC 2 cut(s) 836, 1082
Tsp45I GTSAC 1 cut(s) 942
TspDTI ATGAA 2 cut(s) 1065, 1208
TspGWI ACGGA 9 cut(s) 232, 264, 399, 623, 638, 644, 763, 864, 940
TspRI CASTG 3 cut(s) 140, 873, 1164
VpaK11BI GGWCC 1 cut(s) 917
XapI RAATTY 1 cut(s) 1153
XspI CTAG 4 cut(s) 348, 552, 921, 1134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.