Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001214

Physical Location & Seq

Genomic Coordinates Forward (+)

9946534 .. 9949276

Gene Structure 2743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027247

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGTCCGCAGCGACGACGTCATGTTACTGCTACAGATGTAGCAGATTCATTAGAGTTTTCACCGGCGCCGGCGACTCACCGGTGGTGTGTCCGGACTGCGGCAGTGGGTTTGTGGAAGAGCTCGGCAACCCGGTTCCCTCCGTCCACGTGGAATATCGCCGTTCCGCCGCTGCGATGTACATGATCGGAGCCAACAACCGCTTCGGTTCCAATCATGATCTCCGACGACCTCGCAGAAACAACAACGGCGGTGGAGGTGACCGATCGGTGTTCAATCCGGTCATCGTGGTGCGCGGAACTGAGGCGGGGAATGAGGGAAGAGGATTCGAGCTGTTTTTTGACGATGGATCCGGGTCGGGTCTTCGGCCCTTGCCTAGTAACATGTCGGAGTTTTTACTCGGGTCCGGTTTCGACCGCCTGTTGAGTCAGCTTTCGCAGATCGATTTGAACGGAATCGGACGGTACGATCAGCGGCCTGCGGCGAAGTCGGCGGTGGAGTCGTTGCCGACAATCGAGCTCGACGATTCGCACGTGGCGGAGGAGTCTCACTGCGCCGTGTGCAAAGAGCAATTTGAATTGGGAAATGAAGTTCGAGAGATGCCTTGCAAGCATATATACCACTCCGATTGCATCCTGCCGTGGCTTGCGCAGCGGAATTCGTGTCCGGTGTGCCGGCAAGAGCTGCCGGTGGACTCTCCGGCGGTGGTGAATCCGGCCGCTCTGAGTGAGGGCGAGAACGCCGCGCTGACGATCTGGAGGCTTCCGGGAGGCGGATTGGCGGTGGGGAGGTTTGCCGCCGGCGGGAGAAGAGCCGGCGGAGGAGATCGGGAGCTTCCGGTGGTTTATACGGAGATGGACGGCGGGTTTAACGGCGGCGCGCGGAGGAGGGTTTCGTGGTCGGGGAGCGGCGGGAGAGGAAGACGCAGAGGTGGAGTCGGGCGGTTTGTTAGAAGCTTATTCTCTTGTTTCCACGGTGGCAGGGCAGTTGTGCCTCGGCCCTCTTCTGCTCCGAGTTCCTGGCCGGAAGTGAGGCCTGCGCAGATGAACGACAGGAGGGTGAGGCCCTCGAATTCGGAGAGGCCAACTTCCACGGCCCGGACGCACAGGACTTGGTCTATGGAGGTTAACAATGGGGTTGTGACTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051603 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1117 zf-RING_2 zinc_ribbon_9

Protein Analysis

383

Amino Acids

41.43

Weight (kDa)

8.89

Isoelectric Point (pI)

64.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	7 - 41	3.9e-10	zinc-ribbon
zf-rbx1	PF12678	181 - 225	2.5e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	183 - 225	3e-13	Ring finger domain
zf-C3HC4_2	PF13923	184 - 224	7e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	184 - 211	1.1e-07	RING-like zinc finger
zf-C3HC4	PF00097	184 - 224	8.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	184 - 222	1.4e-06	RING-type zinc-finger
DUF1117	PF06547	249 - 334	1.3e-28	Protein of unknown function (DUF1117)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39720 AT2G39720 AT3G46620 AT5G59550 AT5G59550
fragaria_vesca	FvH4_3g36860 FvH4_6g13340 FvH4_7g22850
malus_domestica	MD01G1136700.v1.1 MD03G1087100.v1.1 MD04G1131800.v1.1 MD07G1201700.v1.1 MD10G1074300.v1.1 MD11G1012900.v1.1 MD11G1096200.v1.1 MD12G1144900.v1.1
prunus_persica	Prupe.2G238300_v2.0.a1 Prupe.6G071800_v2.0.a1 Prupe.6G258400_v2.0.a1
pyrus_communis	pycom01g15740 pycom03g06910 pycom04g11990 pycom07g18870 pycom11g08150 pycom12g13930
rosa_chinensis	RchiOBHm_Chr1g0368011 RchiOBHm_Chr3g0466231 RchiOBHm_Chr5g0066071
rosa_laevigata	RLG00000024595 RLG00000027247 RLG00000035839
rosa_multiflora	Rmu_co8242689.1_g000001 Rmu_co8418295.1_g000001 Rmu_sc0000350.1_g000012 Rmu_sc0002406.1_g000005 Rmu_sc0005240.1_g000003 Rmu_sc0005240.1_g000004
rosa_roxburghii	Rroxscaffold_1G00014940 Rroxscaffold_4G00288940 Rroxscaffold_6G00414710
rosa_rugosa	Rorug01G0338400 Rorug03G0080500 Rorug05G0376200
rosa_samantha	Rh1AG345200 Rh1BG307500 Rh1CG323100 Rh1DG339600 Rh3BG147700 Rh3DG148400 Rh5AG434600 Rh5BG450900 Rh5CG473200 Rh5DG464500
rosa_wichuraiana	Rw1G030720 Rw3G011940 Rw5G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	20
Acc16I	TGCGCA	2 cut(s)	648, 1038
AccB1I	GGYRCC	1 cut(s)	65
AccBSI	CCGCTC	2 cut(s)	719, 906
AccII	CGCG	4 cut(s)	294, 743, 878, 880
AccIII	TCCGGA	1 cut(s)	91
AclWI	GGATC	2 cut(s)	342, 355
AcoI	YGGCCR	2 cut(s)	714, 1019
AcsI	RAATTY	2 cut(s)	655, 1069
AcvI	CACGTG	2 cut(s)	148, 532
AcyI	GRCGYC	2 cut(s)	17, 66
AfaI	GTAC	2 cut(s)	179, 464
AfiI	CCNNNNNNNGG	4 cut(s)	98, 770, 801, 1095
AflIII	ACRYGT	1 cut(s)	381
AgeI	ACCGGT	1 cut(s)	79
AgsI	TTSAA	3 cut(s)	274, 448, 575
AjnI	CCWGG	1 cut(s)	1016
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AloI	GAACNNNNNNTCC	2 cut(s)	573, 605
AluBI	AGCT	7 cut(s)	121, 331, 430, 517, 682, 832, 954
AluI	AGCT	7 cut(s)	121, 331, 430, 517, 682, 832, 954
Alw21I	GWGCWC	2 cut(s)	123, 519
Alw26I	GTCTC	1 cut(s)	549
AlwI	GGATC	2 cut(s)	342, 355
Ama87I	CYCGRG	1 cut(s)	398
Aor13HI	TCCGGA	1 cut(s)	91
AoxI	GGCC	9 cut(s)	365, 473, 714, 995, 1019, 1031, 1061, 1079, 1092
ApeKI	GCWGC	4 cut(s)	8, 170, 649, 682
ApoI	RAATTY	2 cut(s)	655, 1069
AsiGI	ACCGGT	1 cut(s)	79
AspLEI	GCGC	8 cut(s)	68, 294, 554, 649, 745, 878, 880, 1039
AspS9I	GGNCC	5 cut(s)	366, 402, 996, 1062, 1093
AsuC2I	CCSGG	4 cut(s)	131, 352, 765, 1096
AsuHPI	GGTGA	5 cut(s)	52, 69, 269, 718, 1069
AvaI	CYCGRG	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	402
BamHI	GGATCC	1 cut(s)	347
BanI	GGYRCC	1 cut(s)	65
BanII	GRGCYC	2 cut(s)	123, 519
BbrPI	CACGTG	2 cut(s)	148, 532
BbsI	GAAGAC	2 cut(s)	353, 925
Bbv12I	GWGCWC	2 cut(s)	123, 519
BbvI	GCAGC	4 cut(s)	20, 157, 661, 669
BccI	CCATC	2 cut(s)	338, 847
BceAI	ACGGC	7 cut(s)	144, 262, 539, 622, 874, 886, 1107
BciT130I	CCWGG	1 cut(s)	1018
BcnI	CCSGG	4 cut(s)	131, 352, 765, 1096
BcoDI	GTCTC	1 cut(s)	549
BfaI	CTAG	1 cut(s)	375
BfmI	CTRYAG	1 cut(s)	31
BfoI	RGCGCY	1 cut(s)	69
Bme1390I	CCNGG	5 cut(s)	131, 352, 765, 1018, 1096
Bme18I	GGWCC	1 cut(s)	402
BmeT110I	CYCGRG	1 cut(s)	398
BmgT120I	GGNCC	5 cut(s)	366, 402, 996, 1062, 1093
BmiI	GGNNCC	6 cut(s)	67, 135, 190, 208, 349, 403
BmrFI	CCNGG	5 cut(s)	131, 352, 765, 1018, 1096
BmsI	GCATC	2 cut(s)	588, 639
BpiI	GAAGAC	2 cut(s)	353, 925
BpmI	CTGGAG	1 cut(s)	775
BpuMI	CCSGG	4 cut(s)	131, 352, 765, 1096
Bsa29I	ATCGAT	1 cut(s)	441
BsaAI	YACGTR	2 cut(s)	148, 532
BsaHI	GRCGYC	2 cut(s)	17, 66
BsaJI	CCNNGG	4 cut(s)	638, 970, 992, 1089
BsaWI	WCCGGW	6 cut(s)	79, 91, 277, 404, 664, 835
Bsc4I	CCNNNNNNNGG	4 cut(s)	98, 770, 801, 1095
Bse118I	RCCGGY	7 cut(s)	62, 68, 79, 672, 685, 797, 812
BseAI	TCCGGA	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	1018
BseCI	ATCGAT	1 cut(s)	441
BseDI	CCNNGG	4 cut(s)	638, 970, 992, 1089
BseGI	GGATG	1 cut(s)	630
BseLI	CCNNNNNNNGG	4 cut(s)	98, 770, 801, 1095
BseMII	CTCAG	2 cut(s)	291, 713
BsePI	GCGCGC	1 cut(s)	876
BseRI	GAGGAG	3 cut(s)	554, 834, 898
BseX3I	CGGCCG	1 cut(s)	714
BseXI	GCAGC	4 cut(s)	20, 157, 661, 669
Bsh1236I	CGCG	4 cut(s)	294, 743, 878, 880
Bsh1285I	CGRYCG	3 cut(s)	266, 415, 717
BshFI	GGCC	9 cut(s)	367, 475, 716, 997, 1021, 1033, 1063, 1081, 1094
BshNI	GGYRCC	1 cut(s)	65
BshTI	ACCGGT	1 cut(s)	79
BshVI	ATCGAT	1 cut(s)	441
BsiEI	CGRYCG	3 cut(s)	266, 415, 717
BsiHKAI	GWGCWC	2 cut(s)	123, 519
BsiHKCI	CYCGRG	1 cut(s)	398
BslI	CCNNNNNNNGG	4 cut(s)	98, 770, 801, 1095
BsmAI	GTCTC	1 cut(s)	549
BsnI	GGCC	9 cut(s)	367, 475, 716, 997, 1021, 1033, 1063, 1081, 1094
BsoBI	CYCGRG	1 cut(s)	398
Bsp1286I	GDGCHC	2 cut(s)	123, 519
Bsp13I	TCCGGA	1 cut(s)	91
Bsp1407I	TGTACA	1 cut(s)	177
Bsp143I	GATC	8 cut(s)	183, 217, 263, 347, 438, 466, 750, 823
BspANI	GGCC	9 cut(s)	367, 475, 716, 997, 1021, 1033, 1063, 1081, 1094
BspCNI	CTCAG	2 cut(s)	292, 714
BspDI	ATCGAT	1 cut(s)	441
BspEI	TCCGGA	1 cut(s)	91
BspFNI	CGCG	4 cut(s)	294, 743, 878, 880
BspHI	TCATGA	1 cut(s)	214
BspLI	GGNNCC	6 cut(s)	67, 135, 190, 208, 349, 403
BspPI	GGATC	2 cut(s)	342, 355
BspQI	GCTCTTC	2 cut(s)	111, 802
BspT107I	GGYRCC	1 cut(s)	65
BsrBI	CCGCTC	2 cut(s)	719, 906
BsrFI	RCCGGY	7 cut(s)	62, 68, 79, 672, 685, 797, 812
BsrGI	TGTACA	1 cut(s)	177
BssAI	RCCGGY	7 cut(s)	62, 68, 79, 672, 685, 797, 812
BssECI	CCNNGG	4 cut(s)	638, 970, 992, 1089
BssHII	GCGCGC	1 cut(s)	876
BssMI	GATC	8 cut(s)	183, 217, 263, 347, 438, 466, 750, 823
BssNI	GRCGYC	2 cut(s)	17, 66
Bst2UI	CCWGG	1 cut(s)	1018
Bst4CI	ACNGT	2 cut(s)	462, 974
Bst6I	CTCTTC	4 cut(s)	111, 313, 802, 1006
BstACI	GRCGYC	2 cut(s)	17, 66
BstAPI	GCANNNNNTGC	1 cut(s)	682
BstAUI	TGTACA	1 cut(s)	177
BstBAI	YACGTR	2 cut(s)	148, 532
BstC8I	GCNNGC	9 cut(s)	70, 477, 608, 645, 674, 799, 814, 878, 1035
BstDEI	CTNAG	2 cut(s)	300, 722
BstDSI	CCRYGG	3 cut(s)	638, 970, 1089
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	630
BstFNI	CGCG	4 cut(s)	294, 743, 878, 880
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	8 cut(s)	68, 294, 554, 649, 745, 878, 880, 1039
BstKTI	GATC	8 cut(s)	186, 220, 266, 350, 441, 469, 753, 826
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	8 cut(s)	183, 217, 263, 347, 438, 466, 750, 823
BstMCI	CGRYCG	3 cut(s)	266, 415, 717
BstMWI	GCNNNNNNNGC	5 cut(s)	488, 558, 607, 649, 682
BstNI	CCWGG	1 cut(s)	1018
BstNSI	RCATGY	1 cut(s)	385
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	5 cut(s)	129, 350, 763, 1016, 1094
BstSFI	CTRYAG	1 cut(s)	31
BstUI	CGCG	4 cut(s)	294, 743, 878, 880
BstV1I	GCAGC	4 cut(s)	20, 157, 661, 669
BstV2I	GAAGAC	2 cut(s)	353, 925
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BstZI	CGGCCG	1 cut(s)	714
Bsu15I	ATCGAT	1 cut(s)	441
BsuRI	GGCC	9 cut(s)	367, 475, 716, 997, 1021, 1033, 1063, 1081, 1094
BsuTUI	ATCGAT	1 cut(s)	441
BtgI	CCRYGG	3 cut(s)	638, 970, 1089
BtgZI	GCGATG	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	630
BtsI	GCAGTG	2 cut(s)	109, 547
BtsIMutI	CAGTG	2 cut(s)	109, 547
Cac8I	GCNNGC	9 cut(s)	70, 477, 608, 645, 674, 799, 814, 878, 1035
CciI	TCATGA	1 cut(s)	214
CfoI	GCGC	8 cut(s)	68, 294, 554, 649, 745, 878, 880, 1039
Cfr10I	RCCGGY	7 cut(s)	62, 68, 79, 672, 685, 797, 812
Cfr13I	GGNCC	5 cut(s)	366, 402, 996, 1062, 1093
ClaI	ATCGAT	1 cut(s)	441
CseI	GACGC	2 cut(s)	930, 1108
Csp6I	GTAC	2 cut(s)	178, 463
CspAI	ACCGGT	1 cut(s)	79
CspCI	CAANNNNNGTGG	4 cut(s)	232, 267, 608, 643
CviAII	CATG	4 cut(s)	21, 181, 215, 382
CviQI	GTAC	2 cut(s)	178, 463
DdeI	CTNAG	2 cut(s)	300, 722
DinI	GGCGCC	1 cut(s)	67
DpnI	GATC	8 cut(s)	185, 219, 265, 349, 440, 468, 752, 825
DpnII	GATC	8 cut(s)	183, 217, 263, 347, 438, 466, 750, 823
EaeI	YGGCCR	2 cut(s)	714, 1019
EagI	CGGCCG	1 cut(s)	714
Eam1104I	CTCTTC	4 cut(s)	111, 313, 802, 1006
EarI	CTCTTC	4 cut(s)	111, 313, 802, 1006
EciI	GGCGGA	4 cut(s)	154, 551, 786, 831
Ecl136II	GAGCTC	2 cut(s)	121, 517
EclXI	CGGCCG	1 cut(s)	714
Eco147I	AGGCCT	1 cut(s)	1033
Eco24I	GRGCYC	2 cut(s)	123, 519
Eco47I	GGWCC	1 cut(s)	402
Eco52I	CGGCCG	1 cut(s)	714
Eco53kI	GAGCTC	2 cut(s)	121, 517
Eco72I	CACGTG	2 cut(s)	148, 532
Eco88I	CYCGRG	1 cut(s)	398
Eco91I	GGTNACC	1 cut(s)	257
EcoICRI	GAGCTC	2 cut(s)	121, 517
EcoO109I	RGGNCCY	1 cut(s)	1062
EcoO65I	GGTNACC	1 cut(s)	257
EcoRI	GAATTC	2 cut(s)	655, 1069
EcoRII	CCWGG	1 cut(s)	1016
EcoT38I	GRGCYC	2 cut(s)	123, 519
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
FaeI	CATG	4 cut(s)	24, 184, 218, 385
FaiI	YATR	9 cut(s)	22, 182, 216, 383, 612, 614, 616, 846, 1118
FatI	CATG	4 cut(s)	20, 180, 214, 381
FauI	CCCGC	4 cut(s)	298, 794, 854, 902
FokI	GGATG	1 cut(s)	617
FriOI	GRGCYC	2 cut(s)	123, 519
FspBI	CTAG	1 cut(s)	375
FspI	TGCGCA	2 cut(s)	648, 1038
GlaI	GCGC	8 cut(s)	67, 293, 553, 648, 744, 877, 879, 1038
GsuI	CTGGAG	1 cut(s)	775
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	9 cut(s)	367, 475, 716, 997, 1021, 1033, 1063, 1081, 1094
HgaI	GACGC	2 cut(s)	930, 1108
HhaI	GCGC	8 cut(s)	68, 294, 554, 649, 745, 878, 880, 1039
Hin1I	GRCGYC	2 cut(s)	17, 66
Hin1II	CATG	4 cut(s)	24, 184, 218, 385
Hin6I	GCGC	8 cut(s)	66, 292, 552, 647, 743, 876, 878, 1037
HinP1I	GCGC	8 cut(s)	66, 292, 552, 647, 743, 876, 878, 1037
HincII	GTYRAC	1 cut(s)	1126
HindII	GTYRAC	1 cut(s)	1126
HindIII	AAGCTT	1 cut(s)	952
HpaI	GTTAAC	1 cut(s)	1126
HphI	GGTGA	5 cut(s)	52, 69, 269, 718, 1069
Hpy166II	GTNNAC	3 cut(s)	145, 691, 1126
Hpy188I	TCNGA	8 cut(s)	188, 224, 388, 458, 625, 723, 1011, 1075
Hpy188III	TCNNGA	5 cut(s)	92, 215, 593, 754, 827
Hpy8I	GTNNAC	3 cut(s)	145, 691, 1126
Hpy99I	CGWCG	4 cut(s)	16, 19, 228, 524
HpyCH4III	ACNGT	2 cut(s)	462, 974
HpyCH4IV	ACGT	3 cut(s)	17, 147, 531
HpyCH4V	TGCA	3 cut(s)	561, 606, 630
HpyF10VI	GCNNNNNNNGC	5 cut(s)	488, 558, 607, 649, 682
HpyF3I	CTNAG	2 cut(s)	300, 722
HpySE526I	ACGT	3 cut(s)	17, 147, 531
Hsp92I	GRCGYC	2 cut(s)	17, 66
Hsp92II	CATG	4 cut(s)	24, 184, 218, 385
HspAI	GCGC	8 cut(s)	66, 292, 552, 647, 743, 876, 878, 1037
KasI	GGCGCC	1 cut(s)	65
Kpn2I	TCCGGA	1 cut(s)	91
KroI	GCCGGC	4 cut(s)	68, 672, 797, 812
KroNI	GCCGGC	4 cut(s)	70, 674, 799, 814
KspAI	GTTAAC	1 cut(s)	1126
Kzo9I	GATC	8 cut(s)	183, 217, 263, 347, 438, 466, 750, 823
LguI	GCTCTTC	2 cut(s)	111, 802
LmnI	GCTCC	4 cut(s)	188, 829, 903, 1012
Lsp1109I	GCAGC	4 cut(s)	20, 157, 661, 669
LweI	GCATC	2 cut(s)	588, 639
MaeI	CTAG	1 cut(s)	375
MaeII	ACGT	3 cut(s)	17, 147, 531
MaeIII	GTNAC	4 cut(s)	23, 257, 377, 1138
MalI	GATC	8 cut(s)	185, 219, 265, 349, 440, 468, 752, 825
MbiI	CCGCTC	2 cut(s)	719, 906
MboI	GATC	8 cut(s)	183, 217, 263, 347, 438, 466, 750, 823
MboII	GAAGA	6 cut(s)	128, 330, 353, 819, 930, 993
MflI	RGATCY	1 cut(s)	347
MhlI	GDGCHC	2 cut(s)	123, 519
MluCI	AATT	4 cut(s)	569, 575, 655, 1069
Mly113I	GGCGCC	1 cut(s)	66
MlyI	GAGTC	6 cut(s)	68, 433, 506, 551, 686, 942
MmeI	TCCRAC	2 cut(s)	247, 366
MreI	CGCCGGCG	2 cut(s)	68, 797
MroI	TCCGGA	1 cut(s)	91
MroNI	GCCGGC	4 cut(s)	68, 672, 797, 812
MseI	TTAA	2 cut(s)	867, 1125
MslI	CAYNNNNRTG	1 cut(s)	287
MspA1I	CMGCKG	3 cut(s)	170, 472, 652
MspR9I	CCNGG	5 cut(s)	131, 352, 765, 1018, 1096
MvaI	CCWGG	1 cut(s)	1018
MvnI	CGCG	4 cut(s)	294, 743, 878, 880
MwoI	GCNNNNNNNGC	5 cut(s)	488, 558, 607, 649, 682
NaeI	GCCGGC	4 cut(s)	70, 674, 799, 814
NarI	GGCGCC	1 cut(s)	66
NciI	CCSGG	4 cut(s)	131, 352, 765, 1096
NdeII	GATC	8 cut(s)	183, 217, 263, 347, 438, 466, 750, 823
NgoMIV	GCCGGC	4 cut(s)	68, 672, 797, 812
NlaIII	CATG	4 cut(s)	24, 184, 218, 385
NlaIV	GGNNCC	6 cut(s)	67, 135, 190, 208, 349, 403
NmeAIII	GCCGAG	2 cut(s)	102, 973
NmuCI	GTSAC	2 cut(s)	257, 1138
NsbI	TGCGCA	2 cut(s)	648, 1038
NspI	RCATGY	1 cut(s)	385
PagI	TCATGA	1 cut(s)	214
PauI	GCGCGC	1 cut(s)	876
PceI	AGGCCT	1 cut(s)	1033
PciI	ACATGT	1 cut(s)	381
PciSI	GCTCTTC	2 cut(s)	111, 802
PcsI	WCGNNNNNNNCGW	3 cut(s)	462, 519, 528
PdiI	GCCGGC	4 cut(s)	70, 674, 799, 814
PfeI	GAWTC	5 cut(s)	45, 324, 453, 524, 709
PflFI	GACNNNGTC	2 cut(s)	16, 1111
PfoI	TCCNGGA	1 cut(s)	763
PinAI	ACCGGT	1 cut(s)	79
Ple19I	CGATCG	1 cut(s)	266
PleI	GAGTC	6 cut(s)	68, 432, 505, 550, 686, 941
PluTI	GGCGCC	1 cut(s)	69
PmaCI	CACGTG	2 cut(s)	148, 532
PmlI	CACGTG	2 cut(s)	148, 532
PpsI	GAGTC	6 cut(s)	68, 432, 505, 550, 686, 941
Ppu21I	YACGTR	2 cut(s)	148, 532
PscI	ACATGT	1 cut(s)	381
Psp124BI	GAGCTC	2 cut(s)	123, 519
Psp6I	CCWGG	1 cut(s)	1016
PspCI	CACGTG	2 cut(s)	148, 532
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	1016
PspN4I	GGNNCC	6 cut(s)	67, 135, 190, 208, 349, 403
PspPI	GGNCC	5 cut(s)	366, 402, 996, 1062, 1093
PsuI	RGATCY	1 cut(s)	347
PsyI	GACNNNGTC	2 cut(s)	16, 1111
PteI	GCGCGC	1 cut(s)	876
PvuI	CGATCG	1 cut(s)	266
RsaI	GTAC	2 cut(s)	179, 464
RsaNI	GTAC	2 cut(s)	178, 463
RseI	CAYNNNNRTG	1 cut(s)	287
SacI	GAGCTC	2 cut(s)	123, 519
SapI	GCTCTTC	2 cut(s)	111, 802
SaqAI	TTAA	2 cut(s)	867, 1125
Sau3AI	GATC	8 cut(s)	183, 217, 263, 347, 438, 466, 750, 823
Sau96I	GGNCC	5 cut(s)	366, 402, 996, 1062, 1093
SchI	GAGTC	6 cut(s)	68, 433, 506, 551, 686, 942
ScrFI	CCNGG	5 cut(s)	131, 352, 765, 1018, 1096
SduI	GDGCHC	2 cut(s)	123, 519
SfaNI	GCATC	2 cut(s)	588, 639
SfcI	CTRYAG	1 cut(s)	31
SfoI	GGCGCC	1 cut(s)	67
SgrAI	CRCCGGYG	4 cut(s)	62, 68, 79, 797
SinI	GGWCC	1 cut(s)	402
SmiMI	CAYNNNNRTG	1 cut(s)	287
Sse9I	AATT	4 cut(s)	569, 575, 655, 1069
SseBI	AGGCCT	1 cut(s)	1033
SspDI	GGCGCC	1 cut(s)	65
SspMI	CTAG	1 cut(s)	375
SstI	GAGCTC	2 cut(s)	123, 519
StuI	AGGCCT	1 cut(s)	1033
StyD4I	CCNGG	5 cut(s)	129, 350, 763, 1016, 1094
TaaI	ACNGT	2 cut(s)	462, 974
TaiI	ACGT	3 cut(s)	20, 150, 534
TaqI	TCGA	7 cut(s)	327, 411, 441, 513, 519, 592, 1067
TaqII	GACCGA	1 cut(s)	276
TasI	AATT	4 cut(s)	569, 575, 655, 1069
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	9 cut(s)	102, 170, 475, 482, 719, 743, 797, 876, 909
TfiI	GAWTC	5 cut(s)	45, 324, 453, 524, 709
Tru1I	TTAA	2 cut(s)	867, 1125
Tru9I	TTAA	2 cut(s)	867, 1125
TscAI	CASTG	2 cut(s)	109, 554
TseFI	GTSAC	2 cut(s)	257, 1138
TseI	GCWGC	4 cut(s)	8, 170, 649, 682
Tsp45I	GTSAC	2 cut(s)	257, 1138
TspDTI	ATGAA	3 cut(s)	37, 600, 1058
TspGWI	ACGGA	3 cut(s)	130, 465, 863
TspRI	CASTG	2 cut(s)	109, 554
Tth111I	GACNNNGTC	2 cut(s)	16, 1111
VpaK11BI	GGWCC	1 cut(s)	402
XapI	RAATTY	2 cut(s)	655, 1069
XceI	RCATGY	1 cut(s)	385
XspI	CTAG	1 cut(s)	375
ZraI	GACGTC	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.