FvH4_7g22840

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015032
Physical Location & Seq
Reverse (-)
17944418 .. 17947175
2758 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g22840.t1

Sequence Viewer

Length: 1293 bp
ATGCCACCTCTTCTTCTTCATCTTCTTCTCCTCCATTTCTTCACTTACAACAGTCGACTCTGCTTCTCCTCTCCACAACCTAAAACCCTCATTCTACCTCTCAAAACCCAAACACTCCCAAAACCCTCAAACAAGCTCTCATTCCACCACAACGTCACCCTAACCATCTCCCTCACAGTCGGGTTGCCCCCACAGAACGTCACCATGGTCCTCGACACAGGCAGTGAACTCTCCTGGCTCCATTGTAAGAAAACCCCAATCCTCACCAACGTCTTCAACCCACTCGCCTCCAAATCCTACATCCCAGTCTCTTGCTCCACGCCCACATGCCGAACCCGGACCCGGGACCTATCCATACCCGTTTCCTGCGACCCGAAAAAGCTCTGCCACGCCACTCTCTCCTACGCCGACGCCTCCTCCCTAGAAGGCAACCTCGCCTCCGACACATTCTTCCTCGGGTCTTCGGGTCAACCCGGGACCGTGTTCGGGTGCATGGACTCCGGGTTCAGCTCCAACTCCGAAGAAGACGCCAAGACAACCGGGTTATTGGGCATGAACCGGGGCTCCTTATCCTTCATAACCCAAATGGGCTACCCGAAATTCTCGTACTGCATATCGGGACGTGACGCCTCCGGCGTCTTGCTCTTCGGCCAAGCCAGCTTCCCGTGGCTCGGGCCGTTAAACTACACGCCGTTAGTTCAAATGTCGAACCCTTTGCCATACTTCGACCGCGTGGCGTACACGGTCCAGCTCGAGGGGATCCGGGTCGGCGGGAAAGTACTATCTTTGCCGAAGTCAGTGTTCGTACCCGACCACACCGGGGCGGGTCAGACAATGGTGGACTCGGGCACCCAGTTCACGTTTCTTCTCGGGTCGGTTTACACCGCTTTGAGAAACGAGTTCGTTTTACAAACCAAACCGGGTCTGAAGCTCCTGGACGACCCGAACTTCGTTTTCCAAGGCGCGATGGACTTGTGTTTCCAAGTCCCGATGGACCGGCTGAACCGGCCGGTTCTGCCGGCTTTGCCAGCTGTCACGCTGATGTTTAGGGGAGCAGAGATGAGCGTAATGGGAGAGAGGCTGCTGTATCGGGTAGCGGGAATGGTGAGGGGGAGTAATCAGGTGTATTGCTTCACGTTTGGGAACTCTGACTTGCTGGGTATAGAGGCGTTTGTGATTGGTCACTATCATCAGCAGAATGTGTGGATGGAGTTTGATCTGGAGAAGTCTAGGGTGGGTGTGGCTCAGGTTAGGTGTGACCTCGCCAGTCAAAGACTTGGTTTGGGTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

431

Amino Acids

47.12

Weight (kDa)

8.58

Isoelectric Point (pI)

31.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 56 - 218 2.5e-35 Xylanase inhibitor N-terminal
Asp PF00026 57 - 417 7.2e-14 Eukaryotic aspartyl protease
TAXi_C PF14541 246 - 414 2.4e-33 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39710
fragaria_vesca FvH4_7g22840
malus_domestica MD01G1136600.v1.1 MD07G1201600.v1.1
prunus_persica Prupe.2G238200_v2.0.a1
pyrus_communis pycom01g15730 pycom07g18860
rosa_chinensis RchiOBHm_Chr1g0368001
rosa_laevigata RLG00000027248
rosa_roxburghii Rroxscaffold_4G00288960
rosa_rugosa Rorug01G0338400
rosa_samantha Rh1AG345100 Rh1BG307400 Rh1CG323000 Rh1DG339500
rosa_wichuraiana Rw1G030710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 848
AccI GTMKAC 1 cut(s) 55
AccII CGCG 2 cut(s) 732, 965
AciI CCGC 5 cut(s) 730, 771, 824, 885, 1097
AclWI GGATC 2 cut(s) 754, 767
AcoI YGGCCR 2 cut(s) 649, 1007
AcsI RAATTY 1 cut(s) 599
AcuI CTGAAG 1 cut(s) 947
AcyI GRCGYC 4 cut(s) 411, 528, 627, 636
AfaI GTAC 4 cut(s) 608, 740, 780, 807
AfiI CCNNNNNNNGG 6 cut(s) 342, 343, 486, 671, 754, 820
AgsI TTSAA 2 cut(s) 277, 701
AjiI CACGTC 1 cut(s) 623
AjnI CCWGG 2 cut(s) 233, 933
AloI GAACNNNNNNTCC 4 cut(s) 488, 520, 548, 580
AluBI AGCT 7 cut(s) 136, 382, 510, 660, 751, 931, 1031
AluI AGCT 7 cut(s) 136, 382, 510, 660, 751, 931, 1031
Alw26I GTCTC 1 cut(s) 313
AlwI GGATC 2 cut(s) 754, 767
Ama87I CYCGRG 7 cut(s) 342, 455, 473, 671, 752, 844, 869
AoxI GGCC 3 cut(s) 649, 674, 1007
ApeKI GCWGC 1 cut(s) 1081
ApoI RAATTY 1 cut(s) 599
ArsI GACNNNNNNTTYG 2 cut(s) 932, 964
AspLEI GCGC 1 cut(s) 965
AspS9I GGNCC 8 cut(s) 208, 339, 346, 477, 674, 745, 994, 1286
AsuHPI GGTGA 4 cut(s) 148, 193, 256, 1117
AvaI CYCGRG 7 cut(s) 342, 455, 473, 671, 752, 844, 869
AvaII GGWCC 7 cut(s) 208, 339, 346, 477, 745, 994, 1286
BaeGI GKGCMC 1 cut(s) 851
BamHI GGATCC 1 cut(s) 759
BanI GGYRCC 1 cut(s) 848
BanII GRGCYC 1 cut(s) 566
BbsI GAAGAC 3 cut(s) 265, 453, 531
BbvI GCAGC 1 cut(s) 1068
BccI CCATC 4 cut(s) 173, 961, 985, 1201
BceAI ACGGC 2 cut(s) 661, 676
BcgI CGANNNNNNTGC 2 cut(s) 697, 731
BciT130I CCWGG 2 cut(s) 235, 935
BcoDI GTCTC 1 cut(s) 313
BfaI CTAG 3 cut(s) 422, 1230, 1291
BisI GCNGC 1 cut(s) 1082
BlsI GCNGC 1 cut(s) 1083
BmcAI AGTACT 1 cut(s) 780
Bme18I GGWCC 7 cut(s) 208, 339, 346, 477, 745, 994, 1286
BmeT110I CYCGRG 7 cut(s) 342, 455, 473, 671, 752, 844, 869
BmgBI CACGTC 1 cut(s) 623
BmgT120I GGNCC 8 cut(s) 208, 339, 346, 477, 674, 745, 994, 1286
BmiI GGNNCC 9 cut(s) 239, 341, 347, 478, 565, 761, 850, 1287, 1288
BmrI ACTGGG 2 cut(s) 299, 847
BmuI ACTGGG 2 cut(s) 299, 847
BpiI GAAGAC 3 cut(s) 265, 453, 531
BpmI CTGGAG 1 cut(s) 1241
Bpu10I CCTNAGC 1 cut(s) 1245
BsaHI GRCGYC 4 cut(s) 411, 528, 627, 636
BsaJI CCNNGG 8 cut(s) 204, 342, 454, 473, 559, 665, 819, 958
BsaXI ACNNNNNCTCC 6 cut(s) 401, 422, 431, 452, 548, 578
Bsc4I CCNNNNNNNGG 6 cut(s) 342, 343, 486, 671, 754, 820
Bse118I RCCGGY 4 cut(s) 996, 1005, 1009, 1018
Bse1I ACTGG 3 cut(s) 305, 853, 1266
BseBI CCWGG 2 cut(s) 235, 935
BseDI CCNNGG 8 cut(s) 204, 342, 454, 473, 559, 665, 819, 958
BseGI GGATG 2 cut(s) 300, 1212
BseLI CCNNNNNNNGG 6 cut(s) 342, 343, 486, 671, 754, 820
BseMII CTCAG 1 cut(s) 1259
BseNI ACTGG 3 cut(s) 305, 853, 1266
BseRI GAGGAG 3 cut(s) 20, 58, 406
BseSI GKGCMC 1 cut(s) 851
BseX3I CGGCCG 1 cut(s) 1007
BseXI GCAGC 1 cut(s) 1068
BseYI CCCAGC 1 cut(s) 1156
Bsh1236I CGCG 2 cut(s) 732, 965
Bsh1285I CGRYCG 2 cut(s) 730, 1010
BshFI GGCC 3 cut(s) 651, 676, 1009
BshNI GGYRCC 1 cut(s) 848
BsiEI CGRYCG 2 cut(s) 730, 1010
BsiHKCI CYCGRG 7 cut(s) 342, 455, 473, 671, 752, 844, 869
BslFI GGGAC 5 cut(s) 359, 490, 633, 971, 1272
BslI CCNNNNNNNGG 6 cut(s) 342, 343, 486, 671, 754, 820
BsmAI GTCTC 1 cut(s) 313
BsmFI GGGAC 5 cut(s) 359, 490, 633, 971, 1272
BsnI GGCC 3 cut(s) 651, 676, 1009
BsoBI CYCGRG 7 cut(s) 342, 455, 473, 671, 752, 844, 869
Bsp1286I GDGCHC 2 cut(s) 566, 851
Bsp143I GATC 2 cut(s) 759, 1216
Bsp19I CCATGG 1 cut(s) 204
BspACI CCGC 5 cut(s) 730, 771, 824, 885, 1097
BspANI GGCC 3 cut(s) 651, 676, 1009
BspCNI CTCAG 1 cut(s) 1258
BspFNI CGCG 2 cut(s) 732, 965
BspLI GGNNCC 9 cut(s) 239, 341, 347, 478, 565, 761, 850, 1287, 1288
BspPI GGATC 2 cut(s) 754, 767
BspQI GCTCTTC 1 cut(s) 650
BspT107I GGYRCC 1 cut(s) 848
BsrFI RCCGGY 4 cut(s) 996, 1005, 1009, 1018
BsrI ACTGG 3 cut(s) 305, 853, 1266
BssAI RCCGGY 4 cut(s) 996, 1005, 1009, 1018
BssECI CCNNGG 8 cut(s) 204, 342, 454, 473, 559, 665, 819, 958
BssMI GATC 2 cut(s) 759, 1216
BssNI GRCGYC 4 cut(s) 411, 528, 627, 636
BssT1I CCWWGG 2 cut(s) 204, 958
Bst2UI CCWGG 2 cut(s) 235, 935
Bst4CI ACNGT 4 cut(s) 53, 178, 481, 745
Bst6I CTCTTC 2 cut(s) 15, 650
BstACI GRCGYC 4 cut(s) 411, 528, 627, 636
BstC8I GCNNGC 3 cut(s) 658, 1020, 1029
BstDEI CTNAG 1 cut(s) 1245
BstDSI CCRYGG 2 cut(s) 204, 665
BstF5I GGATG 2 cut(s) 300, 1212
BstFNI CGCG 2 cut(s) 732, 965
BstHHI GCGC 1 cut(s) 965
BstKTI GATC 2 cut(s) 762, 1219
BstMAI GTCTC 1 cut(s) 313
BstMBI GATC 2 cut(s) 759, 1216
BstMCI CGRYCG 2 cut(s) 730, 1010
BstMWI GCNNNNNNNGC 5 cut(s) 657, 1006, 1015, 1024, 1028
BstNI CCWGG 2 cut(s) 235, 935
BstNSI RCATGY 1 cut(s) 330
BstSLI GKGCMC 1 cut(s) 851
BstUI CGCG 2 cut(s) 732, 965
BstV1I GCAGC 1 cut(s) 1068
BstV2I GAAGAC 3 cut(s) 265, 453, 531
BstX2I RGATCY 1 cut(s) 759
BstYI RGATCY 1 cut(s) 759
BstZI CGGCCG 1 cut(s) 1007
BsuRI GGCC 3 cut(s) 651, 676, 1009
BtgI CCRYGG 2 cut(s) 204, 665
BtgZI GCGATG 1 cut(s) 980
BtrI CACGTC 1 cut(s) 623
BtsCI GGATG 2 cut(s) 300, 1212
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 2 cut(s) 229, 804
Cac8I GCNNGC 3 cut(s) 658, 1020, 1029
CfoI GCGC 1 cut(s) 965
Cfr10I RCCGGY 4 cut(s) 996, 1005, 1009, 1018
Cfr13I GGNCC 8 cut(s) 208, 339, 346, 477, 674, 745, 994, 1286
Cfr9I CCCGGG 2 cut(s) 342, 473
CseI GACGC 4 cut(s) 419, 536, 625, 635
Csp6I GTAC 4 cut(s) 607, 739, 779, 806
CviAII CATG 4 cut(s) 205, 327, 493, 553
CviQI GTAC 4 cut(s) 607, 739, 779, 806
DdeI CTNAG 1 cut(s) 1245
DpnI GATC 2 cut(s) 761, 1218
DpnII GATC 2 cut(s) 759, 1216
EaeI YGGCCR 2 cut(s) 649, 1007
EagI CGGCCG 1 cut(s) 1007
Eam1104I CTCTTC 2 cut(s) 15, 650
EarI CTCTTC 2 cut(s) 15, 650
EclXI CGGCCG 1 cut(s) 1007
Eco130I CCWWGG 2 cut(s) 204, 958
Eco24I GRGCYC 1 cut(s) 566
Eco47I GGWCC 7 cut(s) 208, 339, 346, 477, 745, 994, 1286
Eco52I CGGCCG 1 cut(s) 1007
Eco57I CTGAAG 1 cut(s) 947
Eco88I CYCGRG 7 cut(s) 342, 455, 473, 671, 752, 844, 869
EcoO109I RGGNCCY 2 cut(s) 346, 1286
EcoRII CCWGG 2 cut(s) 233, 933
EcoT14I CCWWGG 2 cut(s) 204, 958
EcoT38I GRGCYC 1 cut(s) 566
ErhI CCWWGG 2 cut(s) 204, 958
FaeI CATG 4 cut(s) 208, 330, 496, 556
FaiI YATR 9 cut(s) 206, 328, 356, 494, 554, 578, 614, 721, 1163
FaqI GGGAC 5 cut(s) 359, 490, 633, 971, 1272
FatI CATG 4 cut(s) 204, 326, 492, 552
FauI CCCGC 3 cut(s) 764, 817, 1090
FblI GTMKAC 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 1082
FokI GGATG 2 cut(s) 287, 1219
FriOI GRGCYC 1 cut(s) 566
Fsp4HI GCNGC 1 cut(s) 1082
FspBI CTAG 3 cut(s) 422, 1230, 1291
GlaI GCGC 1 cut(s) 964
GluI GCNGC 1 cut(s) 1082
GsaI CCCAGC 1 cut(s) 1160
GsuI CTGGAG 1 cut(s) 1241
HaeIII GGCC 3 cut(s) 651, 676, 1009
HgaI GACGC 4 cut(s) 419, 536, 625, 635
HhaI GCGC 1 cut(s) 965
Hin1I GRCGYC 4 cut(s) 411, 528, 627, 636
Hin1II CATG 4 cut(s) 208, 330, 496, 556
Hin6I GCGC 1 cut(s) 963
HinP1I GCGC 1 cut(s) 963
HincII GTYRAC 2 cut(s) 56, 470
HindII GTYRAC 2 cut(s) 56, 470
HinfI GANTC 3 cut(s) 57, 497, 842
HphI GGTGA 4 cut(s) 148, 193, 256, 1117
Hpy166II GTNNAC 7 cut(s) 56, 227, 470, 741, 841, 858, 880
Hpy188I TCNGA 5 cut(s) 442, 520, 831, 927, 1150
Hpy188III TCNNGA 3 cut(s) 618, 988, 1220
Hpy8I GTNNAC 7 cut(s) 56, 227, 470, 741, 841, 858, 880
Hpy99I CGWCG 1 cut(s) 413
HpyAV CCTTC 2 cut(s) 419, 583
HpyCH4III ACNGT 4 cut(s) 53, 178, 481, 745
HpyCH4IV ACGT 6 cut(s) 153, 198, 270, 622, 860, 1136
HpyCH4V TGCA 2 cut(s) 492, 612
HpyF10VI GCNNNNNNNGC 5 cut(s) 657, 1006, 1015, 1024, 1028
HpyF3I CTNAG 1 cut(s) 1245
HpySE526I ACGT 6 cut(s) 153, 198, 270, 622, 860, 1136
Hsp92I GRCGYC 4 cut(s) 411, 528, 627, 636
Hsp92II CATG 4 cut(s) 208, 330, 496, 556
HspAI GCGC 1 cut(s) 963
KflI GGGWCCC 1 cut(s) 1286
KroI GCCGGC 1 cut(s) 1018
KroNI GCCGGC 1 cut(s) 1020
Kzo9I GATC 2 cut(s) 759, 1216
LguI GCTCTTC 1 cut(s) 650
LmnI GCTCC 6 cut(s) 243, 320, 515, 569, 936, 1052
Lsp1109I GCAGC 1 cut(s) 1068
MaeI CTAG 3 cut(s) 422, 1230, 1291
MaeII ACGT 6 cut(s) 153, 198, 270, 622, 860, 1136
MaeIII GTNAC 6 cut(s) 154, 199, 623, 1033, 1181, 1256
MalI GATC 2 cut(s) 761, 1218
MboI GATC 2 cut(s) 759, 1216
MflI RGATCY 1 cut(s) 759
MhlI GDGCHC 2 cut(s) 566, 851
MluCI AATT 1 cut(s) 599
MlyI GAGTC 3 cut(s) 51, 491, 836
MmeI TCCRAC 2 cut(s) 465, 537
MroNI GCCGGC 1 cut(s) 1018
MseI TTAA 1 cut(s) 680
MslI CAYNNNNRTG 1 cut(s) 1040
MspA1I CMGCKG 1 cut(s) 1031
MvaI CCWGG 2 cut(s) 235, 935
MvnI CGCG 2 cut(s) 732, 965
MwoI GCNNNNNNNGC 5 cut(s) 657, 1006, 1015, 1024, 1028
NaeI GCCGGC 1 cut(s) 1020
NcoI CCATGG 1 cut(s) 204
NdeII GATC 2 cut(s) 759, 1216
NgoMIV GCCGGC 1 cut(s) 1018
NlaIII CATG 4 cut(s) 208, 330, 496, 556
NlaIV GGNNCC 9 cut(s) 239, 341, 347, 478, 565, 761, 850, 1287, 1288
NmuCI GTSAC 6 cut(s) 154, 199, 623, 1033, 1181, 1256
NspI RCATGY 1 cut(s) 330
PaeR7I CTCGAG 1 cut(s) 752
PciSI GCTCTTC 1 cut(s) 650
PcsI WCGNNNNNNNCGW 1 cut(s) 633
PdiI GCCGGC 1 cut(s) 1020
PfoI TCCNGGA 1 cut(s) 933
PkrI GCNGC 1 cut(s) 1083
PleI GAGTC 3 cut(s) 51, 491, 836
PpsI GAGTC 3 cut(s) 51, 491, 836
PpuMI RGGWCCY 2 cut(s) 346, 1286
Psp5II RGGWCCY 2 cut(s) 346, 1286
Psp6I CCWGG 2 cut(s) 233, 933
PspFI CCCAGC 1 cut(s) 1156
PspGI CCWGG 2 cut(s) 233, 933
PspN4I GGNNCC 9 cut(s) 239, 341, 347, 478, 565, 761, 850, 1287, 1288
PspPI GGNCC 8 cut(s) 208, 339, 346, 477, 674, 745, 994, 1286
PspPPI RGGWCCY 2 cut(s) 346, 1286
PspXI VCTCGAGB 1 cut(s) 752
PsuI RGATCY 1 cut(s) 759
PvuII CAGCTG 1 cut(s) 1031
RsaI GTAC 4 cut(s) 608, 740, 780, 807
RsaNI GTAC 4 cut(s) 607, 739, 779, 806
RseI CAYNNNNRTG 1 cut(s) 1040
SalI GTCGAC 1 cut(s) 54
SapI GCTCTTC 1 cut(s) 650
SaqAI TTAA 1 cut(s) 680
SatI GCNGC 1 cut(s) 1082
Sau3AI GATC 2 cut(s) 759, 1216
Sau96I GGNCC 8 cut(s) 208, 339, 346, 477, 674, 745, 994, 1286
ScaI AGTACT 1 cut(s) 780
SchI GAGTC 3 cut(s) 51, 491, 836
SduI GDGCHC 2 cut(s) 566, 851
Sfr274I CTCGAG 1 cut(s) 752
SinI GGWCC 7 cut(s) 208, 339, 346, 477, 745, 994, 1286
SlaI CTCGAG 1 cut(s) 752
SmaI CCCGGG 2 cut(s) 344, 475
SmiMI CAYNNNNRTG 1 cut(s) 1040
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
Sse9I AATT 1 cut(s) 599
SsiI CCGC 5 cut(s) 730, 771, 824, 885, 1097
SspMI CTAG 3 cut(s) 422, 1230, 1291
StyI CCWWGG 2 cut(s) 204, 958
TaaI ACNGT 4 cut(s) 53, 178, 481, 745
TaiI ACGT 6 cut(s) 156, 201, 273, 625, 863, 1139
TaqI TCGA 5 cut(s) 55, 213, 707, 726, 753
TasI AATT 1 cut(s) 599
TatI WGTACW 1 cut(s) 778
Tru1I TTAA 1 cut(s) 680
Tru9I TTAA 1 cut(s) 680
TscAI CASTG 2 cut(s) 229, 804
TseFI GTSAC 6 cut(s) 154, 199, 623, 1033, 1181, 1256
TseI GCWGC 1 cut(s) 1081
Tsp45I GTSAC 6 cut(s) 154, 199, 623, 1033, 1181, 1256
TspDTI ATGAA 3 cut(s) 8, 565, 569
TspMI CCCGGG 2 cut(s) 342, 473
TspRI CASTG 2 cut(s) 229, 804
VpaK11BI GGWCC 7 cut(s) 208, 339, 346, 477, 745, 994, 1286
XapI RAATTY 1 cut(s) 599
XceI RCATGY 1 cut(s) 330
XhoI CTCGAG 1 cut(s) 752
XmaI CCCGGG 2 cut(s) 342, 473
XmiI GTMKAC 1 cut(s) 55
XspI CTAG 3 cut(s) 422, 1230, 1291
ZrmI AGTACT 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.