pycom01g15730

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0015032
Physical Location & Seq
Reverse (-)
15507642 .. 15508922
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g15730.1

Sequence Viewer

Length: 1281 bp
ATGCCCATTCTCCTCGCTCTCCTCCTTCTTCAACTCCTCACCACCCTCTGTTTCTCTGCACCAAAACCAGAAACTCTAATCCTGCCCCTCAAAACACAGACCCTCCCACAGGGGTCCCTTCCAAAATCCACCAACAAGCTCTCCTTCCACCACAACGTCACCCTCACAATCTCCCTCTCCGTCGGCTCTCCGCCGCAGCAAGTCACCATGGTCCTCGACACAGGCAGCGAGCTTTCGTGGCTTCGCTGCAAAAAAGCCCCCAACTTCAACTCTGTCTTCAATCCACTAGCCTCCAAGTCCTACTCCCCAGTCCCCTGTTCCTCCTCCGTCTGCCGGACCCGAACCCGCGACTTCCCCATACCCGTTTCCTGCGACCCGAAAAAGCTCTGCCACTCCATTCTCTCCTACGCCGACGCCTCCTCCATCGAAGGTAACCTCGCACGGGAAACTTTCAATCTCGGGTCGTCCGCCCAACCCGGTACCATATTCGGGTGCATGGATTCCGGGTCCAGTTCGAACGCTGATGAGGACTCCAAGACAACCGGGTTAATGGGCATGAACCGCGGTTCATTATCCTTCGTTACACAGATGGGATTTCCGAAATTTTCCTACTGCATATCGGGTCGCGACTCGTCTGGTGTTTTGCTTTTCGGGGAAGCGAAGTTCGATTGGCTCAAACCGTTAAATTACACCCCACTGGTTCATATTTCAACCCCATTGCCGTACTTCGACCGGGTAGCGTACACGGTCCAGCTGGACGGGATCCGGGTTGGAGGGAAGGTGTTACTGCTCCCGAAGTCCGTTTTCGTACCGGACCATTCCGGGGCAGGTCAAACAATGGTCGACTCGGGAACCCAGTTCACGTTCCTACTCGGTCCGGTTTACACCGCGCTGAAAAAGGAATTCACTCAGCAGACCAAACCGGTGCTTAACCTTTTGAACGACCCGAATTTTGTGTTCCAAGGAGCGATGGATTTGTGTTTCCAAGTCCCGACGAACCGGCCGAGTCTGCCCGCGTTGCCGACAGTAACACTGATGTTTCGGGGGGCCGAGATGAGCGTATCGGGGGAAAGGCTGCTGTATCGGGTGCCGGGAATGGTGAGGGACGGGAATCAGGTGTATTGCTTCACATATGGGAACTCTGACTTGCTGGGCATACAGGCGTTTGTGATTGGTCACTATCATCAGCAGAACGTGTGGATGGAGTTTGATTTGGAAAATTCTAGGGTGGGAGTGGCTGAGGTTAGGTGTGAACTTGCAAGTCAAAAGCTTGGTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

427

Amino Acids

46.55

Weight (kDa)

8.42

Isoelectric Point (pI)

34.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 57 - 218 1.8e-37 Xylanase inhibitor N-terminal
Asp PF00026 58 - 415 9.7e-17 Eukaryotic aspartyl protease
TAXi_C PF14541 247 - 411 3.6e-32 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39710
fragaria_vesca FvH4_7g22840
malus_domestica MD01G1136600.v1.1 MD07G1201600.v1.1
prunus_persica Prupe.2G238200_v2.0.a1
pyrus_communis pycom01g15730 pycom07g18860
rosa_chinensis RchiOBHm_Chr1g0368001
rosa_laevigata RLG00000027248
rosa_roxburghii Rroxscaffold_4G00288960
rosa_rugosa Rorug01G0338400
rosa_samantha Rh1AG345100 Rh1BG307400 Rh1CG323000 Rh1DG339500
rosa_wichuraiana Rw1G030710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 818
Acc65I GGTACC 1 cut(s) 479
AccB1I GGYRCC 2 cut(s) 479, 1087
AccI GTMKAC 1 cut(s) 843
AccII CGCG 5 cut(s) 348, 564, 627, 890, 1016
AciI CCGC 8 cut(s) 191, 194, 346, 468, 562, 564, 888, 1014
AclWI GGATC 2 cut(s) 757, 770
AcoI YGGCCR 1 cut(s) 1001
AcsI RAATTY 4 cut(s) 602, 902, 949, 1219
AcyI GRCGYC 1 cut(s) 414
AfaI GTAC 4 cut(s) 481, 725, 743, 810
AfiI CCNNNNNNNGG 5 cut(s) 109, 333, 442, 489, 823
AflIII ACRYGT 1 cut(s) 1194
AgeI ACCGGT 1 cut(s) 922
AgsI TTSAA 6 cut(s) 32, 268, 280, 454, 711, 940
AloI GAACNNNNNNTCC 2 cut(s) 647, 679
AluBI AGCT 5 cut(s) 139, 232, 385, 754, 1270
AluI AGCT 5 cut(s) 139, 232, 385, 754, 1270
AlwI GGATC 2 cut(s) 757, 770
Ama87I CYCGRG 2 cut(s) 458, 847
AoxI GGCC 2 cut(s) 1001, 1047
ApeKI GCWGC 4 cut(s) 196, 225, 246, 1075
ApoI RAATTY 4 cut(s) 602, 902, 949, 1219
ArsI GACNNNNNNTTYG 3 cut(s) 935, 967, 1258
AsiGI ACCGGT 1 cut(s) 922
Asp718I GGTACC 1 cut(s) 479
AspLEI GCGC 1 cut(s) 892
AspS9I GGNCC 8 cut(s) 114, 211, 336, 507, 748, 814, 875, 1047
AsuC2I CCSGG 7 cut(s) 477, 505, 544, 734, 767, 823, 1092
AsuHPI GGTGA 4 cut(s) 31, 151, 196, 1111
AsuII TTCGAA 1 cut(s) 515
AvaI CYCGRG 2 cut(s) 458, 847
AvaII GGWCC 7 cut(s) 114, 211, 336, 507, 748, 814, 875
BamHI GGATCC 1 cut(s) 762
BanI GGYRCC 2 cut(s) 479, 1087
BbsI GAAGAC 1 cut(s) 268
BbvCI CCTCAGC 1 cut(s) 1239
BbvI GCAGC 4 cut(s) 208, 233, 237, 1062
BccI CCATC 4 cut(s) 431, 583, 964, 1195
BceAI ACGGC 1 cut(s) 706
BcnI CCSGG 7 cut(s) 477, 505, 544, 734, 767, 823, 1092
BfaI CTAG 3 cut(s) 287, 1224, 1279
BfuAI ACCTGC 1 cut(s) 818
BisI GCNGC 5 cut(s) 194, 197, 226, 247, 1076
BlsI GCNGC 5 cut(s) 195, 198, 227, 248, 1077
Bme1390I CCNGG 7 cut(s) 477, 505, 544, 734, 767, 823, 1092
Bme18I GGWCC 7 cut(s) 114, 211, 336, 507, 748, 814, 875
BmeT110I CYCGRG 2 cut(s) 458, 847
BmgT120I GGNCC 8 cut(s) 114, 211, 336, 507, 748, 814, 875, 1047
BmiI GGNNCC 9 cut(s) 115, 116, 338, 481, 508, 764, 853, 1048, 1089
BmrFI CCNGG 7 cut(s) 477, 505, 544, 734, 767, 823, 1092
BmrI ACTGGG 2 cut(s) 302, 850
BmuI ACTGGG 2 cut(s) 302, 850
BpiI GAAGAC 1 cut(s) 268
Bpu10I CCTNAGC 1 cut(s) 1239
Bpu14I TTCGAA 1 cut(s) 515
BpuMI CCSGG 7 cut(s) 477, 505, 544, 734, 767, 823, 1092
BsaHI GRCGYC 1 cut(s) 414
BsaJI CCNNGG 4 cut(s) 207, 562, 822, 961
BsaWI WCCGGW 3 cut(s) 811, 877, 922
BsaXI ACNNNNNCTCC 8 cut(s) 87, 117, 125, 155, 404, 434, 765, 795
Bsc4I CCNNNNNNNGG 5 cut(s) 109, 333, 442, 489, 823
Bse118I RCCGGY 2 cut(s) 922, 999
Bse1I ACTGG 4 cut(s) 308, 510, 702, 856
Bse3DI GCAATG 1 cut(s) 716
BseDI CCNNGG 4 cut(s) 207, 562, 822, 961
BseGI GGATG 1 cut(s) 1206
BseLI CCNNNNNNNGG 5 cut(s) 109, 333, 442, 489, 823
BseMI GCAATG 1 cut(s) 716
BseMII CTCAG 2 cut(s) 923, 1230
BseNI ACTGG 4 cut(s) 308, 510, 702, 856
BseRI GAGGAG 4 cut(s) 11, 26, 313, 409
BseX3I CGGCCG 1 cut(s) 1001
BseXI GCAGC 4 cut(s) 208, 233, 237, 1062
BseYI CCCAGC 1 cut(s) 1150
BsgI GTGCAG 1 cut(s) 42
Bsh1236I CGCG 5 cut(s) 348, 564, 627, 890, 1016
Bsh1285I CGRYCG 2 cut(s) 733, 1004
BshFI GGCC 2 cut(s) 1003, 1049
BshNI GGYRCC 2 cut(s) 479, 1087
BshTI ACCGGT 1 cut(s) 922
BsiEI CGRYCG 2 cut(s) 733, 1004
BsiHKCI CYCGRG 2 cut(s) 458, 847
BslFI GGGAC 4 cut(s) 100, 296, 974, 1118
BslI CCNNNNNNNGG 5 cut(s) 109, 333, 442, 489, 823
BsmFI GGGAC 4 cut(s) 100, 296, 974, 1118
BsnI GGCC 2 cut(s) 1003, 1049
BsoBI CYCGRG 2 cut(s) 458, 847
Bsp119I TTCGAA 1 cut(s) 515
Bsp143I GATC 1 cut(s) 762
Bsp19I CCATGG 1 cut(s) 207
Bsp68I TCGCGA 1 cut(s) 627
BspACI CCGC 8 cut(s) 191, 194, 346, 468, 562, 564, 888, 1014
BspANI GGCC 2 cut(s) 1003, 1049
BspCNI CTCAG 2 cut(s) 922, 1231
BspFNI CGCG 5 cut(s) 348, 564, 627, 890, 1016
BspLI GGNNCC 9 cut(s) 115, 116, 338, 481, 508, 764, 853, 1048, 1089
BspMI ACCTGC 1 cut(s) 818
BspPI GGATC 2 cut(s) 757, 770
BspT104I TTCGAA 1 cut(s) 515
BspT107I GGYRCC 2 cut(s) 479, 1087
BsrDI GCAATG 1 cut(s) 716
BsrFI RCCGGY 2 cut(s) 922, 999
BsrI ACTGG 4 cut(s) 308, 510, 702, 856
BssAI RCCGGY 2 cut(s) 922, 999
BssECI CCNNGG 4 cut(s) 207, 562, 822, 961
BssMI GATC 1 cut(s) 762
BssNI GRCGYC 1 cut(s) 414
BssT1I CCWWGG 2 cut(s) 207, 961
Bst4CI ACNGT 3 cut(s) 681, 748, 1027
BstACI GRCGYC 1 cut(s) 414
BstBI TTCGAA 1 cut(s) 515
BstC8I GCNNGC 2 cut(s) 230, 1014
BstDEI CTNAG 2 cut(s) 909, 1239
BstDSI CCRYGG 2 cut(s) 207, 562
BstEII GGTNACC 1 cut(s) 431
BstENI CCTNNNNNAGG 1 cut(s) 107
BstF5I GGATG 1 cut(s) 1206
BstFNI CGCG 5 cut(s) 348, 564, 627, 890, 1016
BstHHI GCGC 1 cut(s) 892
BstKTI GATC 1 cut(s) 765
BstMBI GATC 1 cut(s) 762
BstMCI CGRYCG 2 cut(s) 733, 1004
BstMWI GCNNNNNNNGC 4 cut(s) 238, 561, 1009, 1018
BstPI GGTNACC 1 cut(s) 431
BstSCI CCNGG 7 cut(s) 475, 503, 542, 732, 765, 821, 1090
BstUI CGCG 5 cut(s) 348, 564, 627, 890, 1016
BstV1I GCAGC 4 cut(s) 208, 233, 237, 1062
BstV2I GAAGAC 1 cut(s) 268
BstX2I RGATCY 1 cut(s) 762
BstYI RGATCY 1 cut(s) 762
BstZI CGGCCG 1 cut(s) 1001
BsuRI GGCC 2 cut(s) 1003, 1049
BtgI CCRYGG 2 cut(s) 207, 562
BtgZI GCGATG 1 cut(s) 983
BtsCI GGATG 1 cut(s) 1206
BtsIMutI CAGTG 2 cut(s) 695, 1031
BtuMI TCGCGA 1 cut(s) 627
BveI ACCTGC 1 cut(s) 818
Cac8I GCNNGC 2 cut(s) 230, 1014
CfoI GCGC 1 cut(s) 892
Cfr10I RCCGGY 2 cut(s) 922, 999
Cfr13I GGNCC 8 cut(s) 114, 211, 336, 507, 748, 814, 875, 1047
Cfr42I CCGCGG 1 cut(s) 565
CpoI CGGWCCG 1 cut(s) 875
CseI GACGC 1 cut(s) 422
Csp6I GTAC 4 cut(s) 480, 724, 742, 809
CspAI ACCGGT 1 cut(s) 922
CspI CGGWCCG 1 cut(s) 875
CviAII CATG 3 cut(s) 208, 496, 556
CviQI GTAC 4 cut(s) 480, 724, 742, 809
DdeI CTNAG 2 cut(s) 909, 1239
DpnI GATC 1 cut(s) 764
DpnII GATC 1 cut(s) 762
EaeI YGGCCR 1 cut(s) 1001
EagI CGGCCG 1 cut(s) 1001
EciI GGCGGA 2 cut(s) 180, 457
EclXI CGGCCG 1 cut(s) 1001
Eco130I CCWWGG 2 cut(s) 207, 961
Eco47I GGWCC 7 cut(s) 114, 211, 336, 507, 748, 814, 875
Eco52I CGGCCG 1 cut(s) 1001
Eco88I CYCGRG 2 cut(s) 458, 847
Eco91I GGTNACC 1 cut(s) 431
EcoNI CCTNNNNNAGG 1 cut(s) 107
EcoO109I RGGNCCY 1 cut(s) 114
EcoO65I GGTNACC 1 cut(s) 431
EcoRI GAATTC 1 cut(s) 902
EcoT14I CCWWGG 2 cut(s) 207, 961
ErhI CCWWGG 2 cut(s) 207, 961
FaeI CATG 3 cut(s) 211, 499, 559
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 4 cut(s) 100, 296, 974, 1118
FatI CATG 3 cut(s) 207, 495, 555
FauI CCCGC 2 cut(s) 353, 1021
FauNDI CATATG 1 cut(s) 1132
FblI GTMKAC 1 cut(s) 843
Fnu4HI GCNGC 5 cut(s) 194, 197, 226, 247, 1076
FokI GGATG 1 cut(s) 1213
Fsp4HI GCNGC 5 cut(s) 194, 197, 226, 247, 1076
FspBI CTAG 3 cut(s) 287, 1224, 1279
GlaI GCGC 1 cut(s) 891
GluI GCNGC 5 cut(s) 194, 197, 226, 247, 1076
GsaI CCCAGC 1 cut(s) 1154
HaeIII GGCC 2 cut(s) 1003, 1049
HgaI GACGC 1 cut(s) 422
HhaI GCGC 1 cut(s) 892
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 3 cut(s) 211, 499, 559
Hin6I GCGC 1 cut(s) 890
HinP1I GCGC 1 cut(s) 890
HincII GTYRAC 1 cut(s) 844
HindII GTYRAC 1 cut(s) 844
HindIII AAGCTT 1 cut(s) 1268
HinfI GANTC 6 cut(s) 500, 530, 629, 845, 1006, 1111
HphI GGTGA 4 cut(s) 31, 151, 196, 1111
Hpy166II GTNNAC 5 cut(s) 744, 844, 861, 883, 1253
Hpy188I TCNGA 2 cut(s) 600, 1144
Hpy188III TCNNGA 4 cut(s) 626, 793, 849, 991
Hpy8I GTNNAC 5 cut(s) 744, 844, 861, 883, 1253
Hpy99I CGWCG 3 cut(s) 185, 416, 997
HpyAV CCTTC 6 cut(s) 35, 128, 154, 422, 586, 772
HpyCH4III ACNGT 3 cut(s) 681, 748, 1027
HpyCH4IV ACGT 3 cut(s) 156, 863, 1194
HpyCH4V TGCA 5 cut(s) 59, 249, 495, 615, 1259
HpyF10VI GCNNNNNNNGC 4 cut(s) 238, 561, 1009, 1018
HpyF3I CTNAG 2 cut(s) 909, 1239
HpySE526I ACGT 3 cut(s) 156, 863, 1194
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 3 cut(s) 211, 499, 559
HspAI GCGC 1 cut(s) 890
KflI GGGWCCC 1 cut(s) 114
KpnI GGTACC 1 cut(s) 483
KspI CCGCGG 1 cut(s) 565
Kzo9I GATC 1 cut(s) 762
LmnI GCTCC 2 cut(s) 795, 965
Lsp1109I GCAGC 4 cut(s) 208, 233, 237, 1062
MaeI CTAG 3 cut(s) 287, 1224, 1279
MaeII ACGT 3 cut(s) 156, 863, 1194
MaeIII GTNAC 7 cut(s) 157, 202, 431, 580, 783, 1027, 1175
MalI GATC 1 cut(s) 764
MboI GATC 1 cut(s) 762
MboII GAAGA 2 cut(s) 20, 268
MflI RGATCY 1 cut(s) 762
MluCI AATT 5 cut(s) 602, 685, 902, 949, 1219
MlyI GAGTC 4 cut(s) 524, 623, 839, 1015
MmeI TCCRAC 1 cut(s) 751
MseI TTAA 3 cut(s) 548, 683, 930
MspA1I CMGCKG 2 cut(s) 564, 754
MspR9I CCNGG 7 cut(s) 477, 505, 544, 734, 767, 823, 1092
MvnI CGCG 5 cut(s) 348, 564, 627, 890, 1016
MwoI GCNNNNNNNGC 4 cut(s) 238, 561, 1009, 1018
NciI CCSGG 7 cut(s) 477, 505, 544, 734, 767, 823, 1092
NcoI CCATGG 1 cut(s) 207
NdeI CATATG 1 cut(s) 1132
NdeII GATC 1 cut(s) 762
NlaIII CATG 3 cut(s) 211, 499, 559
NlaIV GGNNCC 9 cut(s) 115, 116, 338, 481, 508, 764, 853, 1048, 1089
NmeAIII GCCGAG 2 cut(s) 1029, 1075
NmuCI GTSAC 3 cut(s) 157, 202, 1175
NruI TCGCGA 1 cut(s) 627
NspV TTCGAA 1 cut(s) 515
PcsI WCGNNNNNNNCGW 1 cut(s) 1001
PfeI GAWTC 2 cut(s) 500, 1111
PinAI ACCGGT 1 cut(s) 922
PkrI GCNGC 5 cut(s) 195, 198, 227, 248, 1077
PleI GAGTC 4 cut(s) 524, 623, 839, 1014
PpsI GAGTC 4 cut(s) 524, 623, 839, 1014
PpuMI RGGWCCY 1 cut(s) 114
Psp5II RGGWCCY 1 cut(s) 114
PspEI GGTNACC 1 cut(s) 431
PspFI CCCAGC 1 cut(s) 1150
PspN4I GGNNCC 9 cut(s) 115, 116, 338, 481, 508, 764, 853, 1048, 1089
PspPI GGNCC 8 cut(s) 114, 211, 336, 507, 748, 814, 875, 1047
PspPPI RGGWCCY 1 cut(s) 114
PsuI RGATCY 1 cut(s) 762
PvuII CAGCTG 1 cut(s) 754
RruI TCGCGA 1 cut(s) 627
RsaI GTAC 4 cut(s) 481, 725, 743, 810
RsaNI GTAC 4 cut(s) 480, 724, 742, 809
Rsr2I CGGWCCG 1 cut(s) 875
RsrII CGGWCCG 1 cut(s) 875
SacII CCGCGG 1 cut(s) 565
SalI GTCGAC 1 cut(s) 842
SaqAI TTAA 3 cut(s) 548, 683, 930
SatI GCNGC 5 cut(s) 194, 197, 226, 247, 1076
Sau3AI GATC 1 cut(s) 762
Sau96I GGNCC 8 cut(s) 114, 211, 336, 507, 748, 814, 875, 1047
SchI GAGTC 4 cut(s) 524, 623, 839, 1015
ScrFI CCNGG 7 cut(s) 477, 505, 544, 734, 767, 823, 1092
Sfr303I CCGCGG 1 cut(s) 565
SfuI TTCGAA 1 cut(s) 515
SgrBI CCGCGG 1 cut(s) 565
SinI GGWCC 7 cut(s) 114, 211, 336, 507, 748, 814, 875
Sse9I AATT 5 cut(s) 602, 685, 902, 949, 1219
SsiI CCGC 8 cut(s) 191, 194, 346, 468, 562, 564, 888, 1014
SspMI CTAG 3 cut(s) 287, 1224, 1279
StyD4I CCNGG 7 cut(s) 475, 503, 542, 732, 765, 821, 1090
StyI CCWWGG 2 cut(s) 207, 961
TaaI ACNGT 3 cut(s) 681, 748, 1027
TaiI ACGT 3 cut(s) 159, 866, 1197
TaqI TCGA 6 cut(s) 216, 426, 515, 666, 729, 843
TaqII GACCGA 1 cut(s) 863
TasI AATT 5 cut(s) 602, 685, 902, 949, 1219
TauI GCSGC 1 cut(s) 196
TfiI GAWTC 2 cut(s) 500, 1111
Tru1I TTAA 3 cut(s) 548, 683, 930
Tru9I TTAA 3 cut(s) 548, 683, 930
TscAI CASTG 2 cut(s) 702, 1038
TseFI GTSAC 3 cut(s) 157, 202, 1175
TseI GCWGC 4 cut(s) 196, 225, 246, 1075
Tsp45I GTSAC 3 cut(s) 157, 202, 1175
TspDTI ATGAA 3 cut(s) 558, 572, 692
TspGWI ACGGA 3 cut(s) 169, 316, 790
TspRI CASTG 2 cut(s) 702, 1038
VpaK11BI GGWCC 7 cut(s) 114, 211, 336, 507, 748, 814, 875
XagI CCTNNNNNAGG 1 cut(s) 107
XapI RAATTY 4 cut(s) 602, 902, 949, 1219
XmiI GTMKAC 1 cut(s) 843
XspI CTAG 3 cut(s) 287, 1224, 1279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.