AT2G40080

early flowering

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007141
Physical Location & Seq
Reverse (-)
16734294 .. 16734953
660 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G40080.1

Sequence Viewer

Length: 336 bp
ATGAAGAGGAACGGCGAGACGAAACGGCGGAGGAACGTGGCGGAGGAGGCAGAGCAGGGAGAGGATCCGGCGATGTGGGAGAATCTTGACCGGAATTTCAGACAAGTGCAATCAGTTTTAGACAGAAACAGATCACTGATTCAACAAGTCAACGACAATCACCAATCGAGAATGGCTGATAACATGTCGAAGAACGTTGCTTTGATTCAAGAACTCAACGGAAACATTTCCAAGGTTGTTAACATGTATTCTGATCTCAATACTAGTTTCTCGTCGGGCTTTCACGGTGGGAAGAACGGTCACGATGGTGGTGGTGCTGCCGGAACTAGAGCTTAA

Protein Analysis

111

Amino Acids

12.38

Weight (kDa)

8.16

Isoelectric Point (pI)

57.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elf4 PF07011 21 - 101 2.8e-39 Early Flowering 4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 28, 41
AclI AACGTT 1 cut(s) 195
AclWI GGATC 2 cut(s) 59, 72
AcsI RAATTY 1 cut(s) 94
AflIII ACRYGT 2 cut(s) 183, 243
AgsI TTSAA 2 cut(s) 143, 209
AhlI ACTAGT 1 cut(s) 263
AleI CACNNNNGTG 1 cut(s) 306
AluBI AGCT 1 cut(s) 332
AluI AGCT 1 cut(s) 332
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 2 cut(s) 59, 72
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 94
Asp700I GAANNNNTTC 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 152
BamHI GGATCC 1 cut(s) 64
BbvI GCAGC 1 cut(s) 304
BccI CCATC 1 cut(s) 299
BceAI ACGGC 2 cut(s) 28, 41
BcoDI GTCTC 1 cut(s) 11
BcuI ACTAGT 1 cut(s) 263
BfaI CTAG 2 cut(s) 264, 327
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
BmiI GGNNCC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 231
BsaWI WCCGGW 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 231
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 304
BsiSI CCGG 3 cut(s) 68, 91, 321
BsmAI GTCTC 1 cut(s) 11
BsmBI CGTCTC 1 cut(s) 11
Bsp143I GATC 3 cut(s) 64, 131, 253
BspACI CCGC 2 cut(s) 28, 41
BspLI GGNNCC 1 cut(s) 66
BspPI GGATC 2 cut(s) 59, 72
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 3 cut(s) 64, 131, 253
BssT1I CCWWGG 1 cut(s) 231
Bst4CI ACNGT 2 cut(s) 287, 299
BstKTI GATC 3 cut(s) 67, 134, 256
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 3 cut(s) 64, 131, 253
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNSI RCATGY 2 cut(s) 187, 247
BstV1I GCAGC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
BtgZI GCGATG 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 134
CviAII CATG 2 cut(s) 184, 244
CviJI RGCY 3 cut(s) 176, 279, 332
CviKI_1 RGCY 3 cut(s) 176, 279, 332
DpnI GATC 3 cut(s) 66, 133, 255
DpnII GATC 3 cut(s) 64, 131, 253
EciI GGCGGA 2 cut(s) 43, 56
Eco130I CCWWGG 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 11
FaeI CATG 2 cut(s) 187, 247
FaiI YATR 2 cut(s) 185, 245
FatI CATG 2 cut(s) 183, 243
Fnu4HI GCNGC 1 cut(s) 318
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 2 cut(s) 264, 327
GluI GCNGC 1 cut(s) 318
HapII CCGG 3 cut(s) 68, 91, 321
Hin1II CATG 2 cut(s) 187, 247
HincII GTYRAC 2 cut(s) 151, 241
HindII GTYRAC 2 cut(s) 151, 241
HinfI GANTC 3 cut(s) 82, 139, 205
HpaI GTTAAC 1 cut(s) 241
HpaII CCGG 3 cut(s) 68, 91, 321
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 2 cut(s) 151, 241
Hpy188I TCNGA 2 cut(s) 101, 253
Hpy188III TCNNGA 4 cut(s) 86, 168, 209, 302
Hpy8I GTNNAC 2 cut(s) 151, 241
Hpy99I CGWCG 1 cut(s) 277
HpyCH4III ACNGT 2 cut(s) 287, 299
HpyCH4IV ACGT 2 cut(s) 36, 195
HpyCH4V TGCA 1 cut(s) 109
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpySE526I ACGT 2 cut(s) 36, 195
Hsp92II CATG 2 cut(s) 187, 247
KspAI GTTAAC 1 cut(s) 241
Kzo9I GATC 3 cut(s) 64, 131, 253
LpnPI CCDG 3 cut(s) 41, 81, 104
Lsp1109I GCAGC 1 cut(s) 304
MaeI CTAG 2 cut(s) 264, 327
MaeII ACGT 2 cut(s) 36, 195
MaeIII GTNAC 1 cut(s) 299
MalI GATC 3 cut(s) 66, 133, 255
MboI GATC 3 cut(s) 64, 131, 253
MboII GAAGA 3 cut(s) 16, 202, 304
MflI RGATCY 1 cut(s) 64
MluCI AATT 1 cut(s) 94
MnlI CCTC 4 cut(s) 24, 37, 40, 55
MroXI GAANNNNTTC 1 cut(s) 226
MseI TTAA 2 cut(s) 240, 334
MslI CAYNNNNRTG 1 cut(s) 306
MspI CCGG 3 cut(s) 68, 91, 321
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 3 cut(s) 64, 131, 253
NlaIII CATG 2 cut(s) 187, 247
NlaIV GGNNCC 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 299
NspI RCATGY 2 cut(s) 187, 247
OliI CACNNNNGTG 1 cut(s) 306
PciI ACATGT 2 cut(s) 183, 243
PdmI GAANNNNTTC 1 cut(s) 226
PfeI GAWTC 3 cut(s) 82, 139, 205
PkrI GCNGC 1 cut(s) 319
PscI ACATGT 2 cut(s) 183, 243
Psp1406I AACGTT 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 66
PsuI RGATCY 1 cut(s) 64
RseI CAYNNNNRTG 1 cut(s) 306
SaqAI TTAA 2 cut(s) 240, 334
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 3 cut(s) 64, 131, 253
SetI ASST 4 cut(s) 39, 198, 237, 334
SmiMI CAYNNNNRTG 1 cut(s) 306
SpeI ACTAGT 1 cut(s) 263
Sse9I AATT 1 cut(s) 94
SsiI CCGC 2 cut(s) 28, 41
SspMI CTAG 2 cut(s) 264, 327
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 2 cut(s) 287, 299
TaiI ACGT 2 cut(s) 39, 198
TaqI TCGA 2 cut(s) 167, 188
TasI AATT 1 cut(s) 94
TfiI GAWTC 3 cut(s) 82, 139, 205
Tru1I TTAA 2 cut(s) 240, 334
Tru9I TTAA 2 cut(s) 240, 334
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 1 cut(s) 141
XapI RAATTY 1 cut(s) 94
XceI RCATGY 2 cut(s) 187, 247
XmnI GAANNNNTTC 1 cut(s) 226
XspI CTAG 2 cut(s) 264, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.