Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007141

Physical Location & Seq

Genomic Coordinates Reverse (-)

7755783 .. 7757002

Gene Structure 1220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00286790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCGGTTCCAAACAAGAATACACCCTCTATTCCCAACATGATGTTGGGGATTTTGGTTAAATTGACAAGTTTTCCAGGAACTTTTGCCTTTCACGAAGATTCCTTGGATACAACTCACATGACCACCACCCGCGAATCCTCCTCCGGACTCGACTCTTCGAGCATGGACGATCAACCCACCAAACGCACCGTTTCACTTGATCCGGAACCCGAACCCGGACCCGGCGGCGAGGTCTGGGTCGAAAACTTCAACCGCAGCTTCCGCCAGGTCCAGGCCGTCCTCGACCGCAACCGCGCTCTGATCCAGCAAGTTAACGACAACCACCAGTCCCGGATTCCGGCCAACATGGTCAAGAACGTCGCCCTCATCCAGGAAATCAACGCCAACATCCGCAAGGTCGTCTCGCTCTACTCCGACCTGTCCTCCGATTTCTCCACCGTCTTTCCCAACAAGGAGCGCTGCGAGCCCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009639 GO:0009648 GO:0009649 GO:0009791 GO:0009909 GO:0009987 GO:0010017 GO:0010114 GO:0010228 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0042752 GO:0042753 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048518 GO:0048573 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080167 GO:0104004 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1313

Protein Analysis

158

Amino Acids

17.6

Weight (kDa)

5.33

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Elf4	PF07011	79 - 153	4.2e-36	Early Flowering 4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40080
fragaria_vesca	FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450
malus_domestica	MD01G1152700.v1.1
prunus_persica	Prupe.2G249800_v2.0.a1
pyrus_communis	pycom07g20010
rosa_chinensis	RchiOBHm_Chr1g0370131
rosa_laevigata	RLG00000027071
rosa_multiflora	Rmu_sc0005056.1_g000001 Rmu_sc0011509.1_g000004
rosa_roxburghii	Rroxscaffold_4G00286790
rosa_rugosa	Rorug01G0354400
rosa_samantha	Rh1AG362900 Rh1BG326100 Rh1CG339400 Rh1DG356600
rosa_wichuraiana	Rw1G031940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	135, 297
AccIII	TCCGGA	2 cut(s)	146, 205
AciI	CCGC	8 cut(s)	5, 133, 228, 256, 265, 289, 295, 394
AclWI	GGATC	2 cut(s)	197, 298
AcoI	YGGCCR	1 cut(s)	342
AfeI	AGCGCT	1 cut(s)	461
AfiI	CCNNNNNNNGG	5 cut(s)	218, 224, 274, 340, 373
AgsI	TTSAA	1 cut(s)	253
AjnI	CCWGG	4 cut(s)	76, 267, 273, 372
AluBI	AGCT	1 cut(s)	261
AluI	AGCT	1 cut(s)	261
Alw26I	GTCTC	1 cut(s)	409
AlwI	GGATC	2 cut(s)	197, 298
Aor13HI	TCCGGA	2 cut(s)	146, 205
Aor51HI	AGCGCT	1 cut(s)	461
AoxI	GGCC	2 cut(s)	276, 342
ApeKI	GCWGC	2 cut(s)	258, 462
AspLEI	GCGC	2 cut(s)	299, 462
AspS9I	GGNCC	2 cut(s)	221, 271
AsuC2I	CCSGG	3 cut(s)	219, 225, 334
AvaII	GGWCC	2 cut(s)	221, 271
BanII	GRGCYC	1 cut(s)	471
BbvI	GCAGC	2 cut(s)	270, 449
BceAI	ACGGC	1 cut(s)	263
BciT130I	CCWGG	4 cut(s)	78, 269, 275, 374
BciVI	GTATCC	1 cut(s)	103
BcnI	CCSGG	3 cut(s)	219, 225, 334
BcoDI	GTCTC	1 cut(s)	409
BfaI	CTAG	1 cut(s)	475
BfoI	RGCGCY	1 cut(s)	463
BfuI	GTATCC	1 cut(s)	103
BisI	GCNGC	3 cut(s)	229, 259, 463
BlsI	GCNGC	3 cut(s)	230, 260, 464
Bme1390I	CCNGG	7 cut(s)	78, 219, 225, 269, 275, 334, 374
Bme18I	GGWCC	2 cut(s)	221, 271
BmgT120I	GGNCC	2 cut(s)	221, 271
BmiI	GGNNCC	3 cut(s)	9, 210, 223
BmrFI	CCNGG	7 cut(s)	78, 219, 225, 269, 275, 334, 374
BpuMI	CCSGG	3 cut(s)	219, 225, 334
BsaJI	CCNNGG	1 cut(s)	105
BsaWI	WCCGGW	2 cut(s)	146, 205
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	5 cut(s)	218, 224, 274, 340, 373
Bse1I	ACTGG	1 cut(s)	328
BseAI	TCCGGA	2 cut(s)	146, 205
BseBI	CCWGG	4 cut(s)	78, 269, 275, 374
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	2 cut(s)	369, 390
BseLI	CCNNNNNNNGG	5 cut(s)	218, 224, 274, 340, 373
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	1 cut(s)	133
BseXI	GCAGC	2 cut(s)	270, 449
Bsh1236I	CGCG	2 cut(s)	135, 297
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	2 cut(s)	278, 344
BsiEI	CGRYCG	1 cut(s)	289
BsiSI	CCGG	6 cut(s)	147, 206, 219, 225, 334, 341
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	5 cut(s)	218, 224, 274, 340, 373
BsmAI	GTCTC	1 cut(s)	409
BsmBI	CGTCTC	1 cut(s)	409
BsmFI	GGGAC	1 cut(s)	316
BsnI	GGCC	2 cut(s)	278, 344
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp13I	TCCGGA	2 cut(s)	146, 205
Bsp143I	GATC	3 cut(s)	172, 202, 303
BspACI	CCGC	8 cut(s)	5, 133, 228, 256, 265, 289, 295, 394
BspANI	GGCC	2 cut(s)	278, 344
BspEI	TCCGGA	2 cut(s)	146, 205
BspFNI	CGCG	2 cut(s)	135, 297
BspLI	GGNNCC	3 cut(s)	9, 210, 223
BspPI	GGATC	2 cut(s)	197, 298
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	3 cut(s)	172, 202, 303
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	4 cut(s)	78, 269, 275, 374
Bst4CI	ACNGT	2 cut(s)	193, 442
Bst6I	CTCTTC	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	467
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstF5I	GGATG	2 cut(s)	369, 390
BstFNI	CGCG	2 cut(s)	135, 297
BstH2I	RGCGCY	1 cut(s)	463
BstHHI	GCGC	2 cut(s)	299, 462
BstKTI	GATC	3 cut(s)	175, 205, 306
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	3 cut(s)	172, 202, 303
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	2 cut(s)	264, 466
BstNI	CCWGG	4 cut(s)	78, 269, 275, 374
BstSCI	CCNGG	7 cut(s)	76, 217, 223, 267, 273, 332, 372
BstUI	CGCG	2 cut(s)	135, 297
BstV1I	GCAGC	2 cut(s)	270, 449
BsuI	GTATCC	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	278, 344
BtsCI	GGATG	2 cut(s)	369, 390
Cac8I	GCNNGC	1 cut(s)	467
CfoI	GCGC	2 cut(s)	299, 462
Cfr13I	GGNCC	2 cut(s)	221, 271
CviAII	CATG	4 cut(s)	40, 121, 166, 349
CviJI	RGCY	4 cut(s)	261, 278, 344, 469
CviKI_1	RGCY	4 cut(s)	261, 278, 344, 469
DpnI	GATC	3 cut(s)	174, 204, 305
DpnII	GATC	3 cut(s)	172, 202, 303
EaeI	YGGCCR	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	163
EarI	CTCTTC	1 cut(s)	163
EciI	GGCGGA	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	471
Eco47I	GGWCC	2 cut(s)	221, 271
Eco47III	AGCGCT	1 cut(s)	461
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoRII	CCWGG	4 cut(s)	76, 267, 273, 372
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	409
FaeI	CATG	4 cut(s)	43, 124, 169, 352
FaiI	YATR	4 cut(s)	41, 122, 167, 350
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	4 cut(s)	39, 120, 165, 348
FauI	CCCGC	1 cut(s)	140
Fnu4HI	GCNGC	3 cut(s)	229, 259, 463
FokI	GGATG	2 cut(s)	356, 377
FriOI	GRGCYC	1 cut(s)	471
Fsp4HI	GCNGC	3 cut(s)	229, 259, 463
FspBI	CTAG	1 cut(s)	475
GlaI	GCGC	2 cut(s)	298, 461
GluI	GCNGC	3 cut(s)	229, 259, 463
HaeII	RGCGCY	1 cut(s)	463
HaeIII	GGCC	2 cut(s)	278, 344
HapII	CCGG	6 cut(s)	147, 206, 219, 225, 334, 341
HhaI	GCGC	2 cut(s)	299, 462
Hin1II	CATG	4 cut(s)	43, 124, 169, 352
Hin6I	GCGC	2 cut(s)	297, 460
HinP1I	GCGC	2 cut(s)	297, 460
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	5 cut(s)	101, 137, 150, 155, 337
HpaI	GTTAAC	1 cut(s)	316
HpaII	CCGG	6 cut(s)	147, 206, 219, 225, 334, 341
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	3 cut(s)	303, 418, 430
Hpy188III	TCNNGA	4 cut(s)	95, 147, 206, 355
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	1 cut(s)	365
HpyCH4III	ACNGT	2 cut(s)	193, 442
HpyCH4IV	ACGT	1 cut(s)	360
HpyF10VI	GCNNNNNNNGC	2 cut(s)	264, 466
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	4 cut(s)	43, 124, 169, 352
HspAI	GCGC	2 cut(s)	297, 460
Kpn2I	TCCGGA	2 cut(s)	146, 205
KspAI	GTTAAC	1 cut(s)	316
Kzo9I	GATC	3 cut(s)	172, 202, 303
LmnI	GCTCC	1 cut(s)	457
Lsp1109I	GCAGC	2 cut(s)	270, 449
MaeI	CTAG	1 cut(s)	475
MaeII	ACGT	1 cut(s)	360
MalI	GATC	3 cut(s)	174, 204, 305
MboI	GATC	3 cut(s)	172, 202, 303
MboII	GAAGA	2 cut(s)	110, 150
MhlI	GDGCHC	1 cut(s)	471
MluCI	AATT	1 cut(s)	62
MlyI	GAGTC	2 cut(s)	144, 149
MmeI	TCCRAC	1 cut(s)	441
MnlI	CCTC	7 cut(s)	37, 151, 154, 226, 293, 377, 436
MroI	TCCGGA	2 cut(s)	146, 205
MseI	TTAA	2 cut(s)	60, 315
MspI	CCGG	6 cut(s)	147, 206, 219, 225, 334, 341
MspR9I	CCNGG	7 cut(s)	78, 219, 225, 269, 275, 334, 374
MvaI	CCWGG	4 cut(s)	78, 269, 275, 374
MvnI	CGCG	2 cut(s)	135, 297
MwoI	GCNNNNNNNGC	2 cut(s)	264, 466
NciI	CCSGG	3 cut(s)	219, 225, 334
NdeII	GATC	3 cut(s)	172, 202, 303
NlaIII	CATG	4 cut(s)	43, 124, 169, 352
NlaIV	GGNNCC	3 cut(s)	9, 210, 223
PfeI	GAWTC	3 cut(s)	101, 137, 337
PfoI	TCCNGGA	3 cut(s)	76, 332, 372
PkrI	GCNGC	3 cut(s)	230, 260, 464
PleI	GAGTC	2 cut(s)	144, 149
PpsI	GAGTC	2 cut(s)	144, 149
Psp6I	CCWGG	4 cut(s)	76, 267, 273, 372
PspGI	CCWGG	4 cut(s)	76, 267, 273, 372
PspN4I	GGNNCC	3 cut(s)	9, 210, 223
PspPI	GGNCC	2 cut(s)	221, 271
SaqAI	TTAA	2 cut(s)	60, 315
SatI	GCNGC	3 cut(s)	229, 259, 463
Sau3AI	GATC	3 cut(s)	172, 202, 303
Sau96I	GGNCC	2 cut(s)	221, 271
SchI	GAGTC	2 cut(s)	144, 149
ScrFI	CCNGG	7 cut(s)	78, 219, 225, 269, 275, 334, 374
SduI	GDGCHC	1 cut(s)	471
SetI	ASST	6 cut(s)	237, 263, 273, 363, 402, 423
SinI	GGWCC	2 cut(s)	221, 271
Sse9I	AATT	1 cut(s)	62
SsiI	CCGC	8 cut(s)	5, 133, 228, 256, 265, 289, 295, 394
SspMI	CTAG	1 cut(s)	475
StyD4I	CCNGG	7 cut(s)	76, 217, 223, 267, 273, 332, 372
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	193, 442
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	4 cut(s)	153, 161, 243, 285
TasI	AATT	1 cut(s)	62
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	3 cut(s)	101, 137, 337
Tru1I	TTAA	2 cut(s)	60, 315
Tru9I	TTAA	2 cut(s)	60, 315
TseI	GCWGC	2 cut(s)	258, 462
VpaK11BI	GGWCC	2 cut(s)	221, 271
XagI	CCTNNNNNAGG	1 cut(s)	371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XspI	CTAG	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.