Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011509.1

Orthogroup ID

OG0007141

Physical Location & Seq

Genomic Coordinates Forward (+)

8649 .. 9089

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011509.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgatgattttgttgccaccgaccgaacccaaaagcaaagcagacaaagaaacctacctaccaaaccgaccaaaaaatttccatgcagctcacatgaccacccgcgaatcctcctccggactcgactcttcgagcatggacgatcagcccaccaaacgcaccgtttcacttgatccggaacccgaacccggcggcgaggtctgggtcgaaaacttcaaccgcagcttccgccaggtgcaggccgtcctcgaccgcaaccgcgctctgatccagcaagtcaacgacaaccaccagtcccggattccggccaacatggtcaagaacgtcgccctcatccgggaaatcaacgccaacatccgcaaggtcgtctcgctctactccgacctgtcctccgatttctccaccgtctttcccaacaaggagcgctgcgatcccaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009639 GO:0009648 GO:0009649 GO:0009791 GO:0009909 GO:0009987 GO:0010017 GO:0010114 GO:0010228 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0042752 GO:0042753 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048518 GO:0048573 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080167 GO:0104004 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1313

Protein Analysis

146

Amino Acids

16.57

Weight (kDa)

6.84

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40080
fragaria_vesca	FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450
malus_domestica	MD01G1152700.v1.1
prunus_persica	Prupe.2G249800_v2.0.a1
pyrus_communis	pycom07g20010
rosa_chinensis	RchiOBHm_Chr1g0370131
rosa_laevigata	RLG00000027071
rosa_multiflora	Rmu_sc0005056.1_g000001 Rmu_sc0011509.1_g000004
rosa_roxburghii	Rroxscaffold_4G00286790
rosa_rugosa	Rorug01G0354400
rosa_samantha	Rh1AG362900 Rh1BG326100 Rh1CG339400 Rh1DG356600
rosa_wichuraiana	Rw1G031940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	105, 261
AccIII	TCCGGA	2 cut(s)	116, 175
AciI	CCGC	7 cut(s)	103, 192, 220, 229, 253, 259, 358
AclWI	GGATC	3 cut(s)	167, 262, 425
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	76
AfeI	AGCGCT	1 cut(s)	425
AfiI	CCNNNNNNNGG	5 cut(s)	188, 238, 304, 336, 337
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	2 cut(s)	89, 225
AluI	AGCT	2 cut(s)	89, 225
Alw26I	GTCTC	1 cut(s)	373
AlwI	GGATC	3 cut(s)	167, 262, 425
Aor13HI	TCCGGA	2 cut(s)	116, 175
Aor51HI	AGCGCT	1 cut(s)	425
AoxI	GGCC	2 cut(s)	240, 306
ApeKI	GCWGC	3 cut(s)	86, 222, 426
ApoI	RAATTY	1 cut(s)	76
AspLEI	GCGC	2 cut(s)	263, 426
AsuC2I	CCSGG	3 cut(s)	189, 298, 338
BbvI	GCAGC	3 cut(s)	98, 234, 413
BceAI	ACGGC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	233
BcnI	CCSGG	3 cut(s)	189, 298, 338
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	1 cut(s)	439
BfoI	RGCGCY	1 cut(s)	427
BisI	GCNGC	4 cut(s)	87, 193, 223, 427
BlsI	GCNGC	4 cut(s)	88, 194, 224, 428
Bme1390I	CCNGG	4 cut(s)	189, 233, 298, 338
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	4 cut(s)	189, 233, 298, 338
BpuMI	CCSGG	3 cut(s)	189, 298, 338
BsaWI	WCCGGW	2 cut(s)	116, 175
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bsc4I	CCNNNNNNNGG	5 cut(s)	188, 238, 304, 336, 337
Bse1I	ACTGG	1 cut(s)	292
BseAI	TCCGGA	2 cut(s)	116, 175
BseBI	CCWGG	1 cut(s)	233
BseGI	GGATG	2 cut(s)	333, 354
BseLI	CCNNNNNNNGG	5 cut(s)	188, 238, 304, 336, 337
BseNI	ACTGG	1 cut(s)	292
BseRI	GAGGAG	1 cut(s)	103
BseXI	GCAGC	3 cut(s)	98, 234, 413
BsgI	GTGCAG	1 cut(s)	257
Bsh1236I	CGCG	2 cut(s)	105, 261
Bsh1285I	CGRYCG	2 cut(s)	24, 253
BshFI	GGCC	2 cut(s)	242, 308
BsiEI	CGRYCG	2 cut(s)	24, 253
BsiSI	CCGG	6 cut(s)	117, 176, 189, 298, 305, 337
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	5 cut(s)	188, 238, 304, 336, 337
BsmAI	GTCTC	1 cut(s)	373
BsmBI	CGTCTC	1 cut(s)	373
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	2 cut(s)	242, 308
Bsp13I	TCCGGA	2 cut(s)	116, 175
Bsp143I	GATC	4 cut(s)	142, 172, 267, 430
BspACI	CCGC	7 cut(s)	103, 192, 220, 229, 253, 259, 358
BspANI	GGCC	2 cut(s)	242, 308
BspEI	TCCGGA	2 cut(s)	116, 175
BspFNI	CGCG	2 cut(s)	105, 261
BspLI	GGNNCC	1 cut(s)	180
BspPI	GGATC	3 cut(s)	167, 262, 425
BsrI	ACTGG	1 cut(s)	292
BssMI	GATC	4 cut(s)	142, 172, 267, 430
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	2 cut(s)	163, 406
Bst6I	CTCTTC	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	240
BstF5I	GGATG	2 cut(s)	333, 354
BstFNI	CGCG	2 cut(s)	105, 261
BstH2I	RGCGCY	1 cut(s)	427
BstHHI	GCGC	2 cut(s)	263, 426
BstKTI	GATC	4 cut(s)	145, 175, 270, 433
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	4 cut(s)	142, 172, 267, 430
BstMCI	CGRYCG	2 cut(s)	24, 253
BstMWI	GCNNNNNNNGC	1 cut(s)	228
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	4 cut(s)	187, 231, 296, 336
BstUI	CGCG	2 cut(s)	105, 261
BstV1I	GCAGC	3 cut(s)	98, 234, 413
BsuRI	GGCC	2 cut(s)	242, 308
BtsCI	GGATG	2 cut(s)	333, 354
Cac8I	GCNNGC	1 cut(s)	240
CfoI	GCGC	2 cut(s)	263, 426
CviAII	CATG	4 cut(s)	83, 94, 136, 313
CviJI	RGCY	5 cut(s)	89, 148, 225, 242, 308
CviKI_1	RGCY	5 cut(s)	89, 148, 225, 242, 308
DpnI	GATC	4 cut(s)	144, 174, 269, 432
DpnII	GATC	4 cut(s)	142, 172, 267, 430
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
EciI	GGCGGA	1 cut(s)	218
Eco47III	AGCGCT	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	373
FaeI	CATG	4 cut(s)	86, 97, 139, 316
FaiI	YATR	4 cut(s)	84, 95, 137, 314
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	4 cut(s)	82, 93, 135, 312
FauI	CCCGC	1 cut(s)	110
Fnu4HI	GCNGC	4 cut(s)	87, 193, 223, 427
FokI	GGATG	2 cut(s)	320, 341
Fsp4HI	GCNGC	4 cut(s)	87, 193, 223, 427
FspBI	CTAG	1 cut(s)	439
GlaI	GCGC	2 cut(s)	262, 425
GluI	GCNGC	4 cut(s)	87, 193, 223, 427
HaeII	RGCGCY	1 cut(s)	427
HaeIII	GGCC	2 cut(s)	242, 308
HapII	CCGG	6 cut(s)	117, 176, 189, 298, 305, 337
HhaI	GCGC	2 cut(s)	263, 426
Hin1II	CATG	4 cut(s)	86, 97, 139, 316
Hin6I	GCGC	2 cut(s)	261, 424
HinP1I	GCGC	2 cut(s)	261, 424
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	4 cut(s)	107, 120, 125, 301
HpaII	CCGG	6 cut(s)	117, 176, 189, 298, 305, 337
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	3 cut(s)	267, 382, 394
Hpy188III	TCNNGA	3 cut(s)	117, 176, 319
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	1 cut(s)	329
HpyCH4III	ACNGT	2 cut(s)	163, 406
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	2 cut(s)	86, 238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	228
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	4 cut(s)	86, 97, 139, 316
HspAI	GCGC	2 cut(s)	261, 424
Kpn2I	TCCGGA	2 cut(s)	116, 175
Kzo9I	GATC	4 cut(s)	142, 172, 267, 430
LmnI	GCTCC	1 cut(s)	421
Lsp1109I	GCAGC	3 cut(s)	98, 234, 413
MaeI	CTAG	1 cut(s)	439
MaeII	ACGT	1 cut(s)	324
MalI	GATC	4 cut(s)	144, 174, 269, 432
MboI	GATC	4 cut(s)	142, 172, 267, 430
MboII	GAAGA	1 cut(s)	120
MluCI	AATT	1 cut(s)	76
MlyI	GAGTC	2 cut(s)	114, 119
MmeI	TCCRAC	1 cut(s)	405
MnlI	CCTC	6 cut(s)	121, 124, 190, 257, 341, 400
MroI	TCCGGA	2 cut(s)	116, 175
MspI	CCGG	6 cut(s)	117, 176, 189, 298, 305, 337
MspR9I	CCNGG	4 cut(s)	189, 233, 298, 338
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	2 cut(s)	105, 261
MwoI	GCNNNNNNNGC	1 cut(s)	228
NciI	CCSGG	3 cut(s)	189, 298, 338
NdeII	GATC	4 cut(s)	142, 172, 267, 430
NlaIII	CATG	4 cut(s)	86, 97, 139, 316
NlaIV	GGNNCC	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	107, 301
PfoI	TCCNGGA	2 cut(s)	296, 336
PkrI	GCNGC	4 cut(s)	88, 194, 224, 428
PleI	GAGTC	2 cut(s)	114, 119
PpsI	GAGTC	2 cut(s)	114, 119
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	180
SatI	GCNGC	4 cut(s)	87, 193, 223, 427
Sau3AI	GATC	4 cut(s)	142, 172, 267, 430
SchI	GAGTC	2 cut(s)	114, 119
ScrFI	CCNGG	4 cut(s)	189, 233, 298, 338
SetI	ASST	9 cut(s)	56, 60, 91, 201, 227, 237, 327, 366, 387
Sse9I	AATT	1 cut(s)	76
SsiI	CCGC	7 cut(s)	103, 192, 220, 229, 253, 259, 358
SspMI	CTAG	1 cut(s)	439
StyD4I	CCNGG	4 cut(s)	187, 231, 296, 336
TaaI	ACNGT	2 cut(s)	163, 406
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	4 cut(s)	123, 131, 207, 249
TaqII	GACCGA	1 cut(s)	38
TasI	AATT	1 cut(s)	76
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	2 cut(s)	107, 301
TseI	GCWGC	3 cut(s)	86, 222, 426
XapI	RAATTY	1 cut(s)	76
XspI	CTAG	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.