Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007141

Physical Location & Seq

Genomic Coordinates Forward (+)

22220090 .. 22220500

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g20010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGACCACCCGTGACTCATCCTCCGGAGCCGAGTCGAGCATGGAGTACTTCAACCACGAATCCCCAACGGAACGCACCGTTTCGGTCACCGCCGTCTTCAATCAAGACGAGGAAGCGTACGATTCGGAGGTGTGGGACCAGTTCAACCGCAGGTTCCGCGAGGTCCAGTCCGTACTGGATCGCAACAGCTCCCTGATCCAGCAGGTCAACGACAACCACCGATCTCGGGTCGCCGACAACATGGTGAAGAACGTGGCGCTTATCCAGGAGATAAACCTCAACATCTCCAAGATCGTTTCACTTTACTCCGACCTTTCATCCAATTTTTCCACCTTCTTTCACCACCACAACGCCGGCGGAATCGCCAAGGACGGCGGCGCCAAGGACGGCGGCGCCAAGCCCGATAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009639 GO:0009648 GO:0009649 GO:0009791 GO:0009909 GO:0009987 GO:0010017 GO:0010114 GO:0010228 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0042752 GO:0042753 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048518 GO:0048573 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080167 GO:0104004 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1313

Protein Analysis

137

Amino Acids

15.24

Weight (kDa)

5.27

Isoelectric Point (pI)

49.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Elf4	PF07011	40 - 118	9e-36	Early Flowering 4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40080
fragaria_vesca	FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450
malus_domestica	MD01G1152700.v1.1
prunus_persica	Prupe.2G249800_v2.0.a1
pyrus_communis	pycom07g20010
rosa_chinensis	RchiOBHm_Chr1g0370131
rosa_laevigata	RLG00000027071
rosa_multiflora	Rmu_sc0005056.1_g000001 Rmu_sc0011509.1_g000004
rosa_roxburghii	Rroxscaffold_4G00286790
rosa_rugosa	Rorug01G0354400
rosa_samantha	Rh1AG362900 Rh1BG326100 Rh1CG339400 Rh1DG356600
rosa_wichuraiana	Rw1G031940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	141, 193
AccB1I	GGYRCC	2 cut(s)	377, 392
AccII	CGCG	1 cut(s)	159
AccIII	TCCGGA	1 cut(s)	23
AciI	CCGC	6 cut(s)	90, 148, 157, 357, 375, 390
AclWI	GGATC	2 cut(s)	186, 190
AcyI	GRCGYC	2 cut(s)	378, 393
AfaI	GTAC	3 cut(s)	47, 119, 174
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	3 cut(s)	52, 100, 145
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	1 cut(s)	189
AluI	AGCT	1 cut(s)	189
AlwI	GGATC	2 cut(s)	186, 190
Ama87I	CYCGRG	1 cut(s)	225
Aor13HI	TCCGGA	1 cut(s)	23
AspLEI	GCGC	3 cut(s)	259, 380, 395
AspS9I	GGNCC	2 cut(s)	136, 163
AsuHPI	GGTGA	3 cut(s)	79, 256, 332
AvaI	CYCGRG	1 cut(s)	225
AvaII	GGWCC	2 cut(s)	136, 163
BanI	GGYRCC	2 cut(s)	377, 392
BbsI	GAAGAC	1 cut(s)	88
BceAI	ACGGC	3 cut(s)	77, 388, 403
BciT130I	CCWGG	1 cut(s)	266
BfoI	RGCGCY	3 cut(s)	260, 381, 396
BfuAI	ACCTGC	2 cut(s)	141, 193
BisI	GCNGC	2 cut(s)	376, 391
BlsI	GCNGC	2 cut(s)	377, 392
BmcAI	AGTACT	1 cut(s)	47
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	2 cut(s)	136, 163
BmeT110I	CYCGRG	1 cut(s)	225
BmgT120I	GGNCC	2 cut(s)	136, 163
BmiI	GGNNCC	5 cut(s)	28, 137, 155, 379, 394
BmrFI	CCNGG	1 cut(s)	266
BpiI	GAAGAC	1 cut(s)	88
BsaHI	GRCGYC	2 cut(s)	378, 393
BsaJI	CCNNGG	2 cut(s)	366, 381
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	3 cut(s)	139, 166, 180
BseAI	TCCGGA	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	2 cut(s)	366, 381
BseGI	GGATG	2 cut(s)	17, 317
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseNI	ACTGG	3 cut(s)	139, 166, 180
Bsh1236I	CGCG	1 cut(s)	159
BshNI	GGYRCC	2 cut(s)	377, 392
BsiHKCI	CYCGRG	1 cut(s)	225
BsiSI	CCGG	2 cut(s)	24, 354
BsiWI	CGTACG	1 cut(s)	117
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	149
BsoBI	CYCGRG	1 cut(s)	225
Bsp13I	TCCGGA	1 cut(s)	23
Bsp143I	GATC	4 cut(s)	178, 195, 221, 291
BspACI	CCGC	6 cut(s)	90, 148, 157, 357, 375, 390
BspEI	TCCGGA	1 cut(s)	23
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	5 cut(s)	28, 137, 155, 379, 394
BspMI	ACCTGC	2 cut(s)	141, 193
BspPI	GGATC	2 cut(s)	186, 190
BspT107I	GGYRCC	2 cut(s)	377, 392
BsrFI	RCCGGY	1 cut(s)	353
BsrI	ACTGG	3 cut(s)	139, 166, 180
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	366, 381
BssMI	GATC	4 cut(s)	178, 195, 221, 291
BssNI	GRCGYC	2 cut(s)	378, 393
BssT1I	CCWWGG	2 cut(s)	366, 381
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	1 cut(s)	79
BstACI	GRCGYC	2 cut(s)	378, 393
BstC8I	GCNNGC	1 cut(s)	355
BstEII	GGTNACC	1 cut(s)	85
BstF5I	GGATG	2 cut(s)	17, 317
BstFNI	CGCG	1 cut(s)	159
BstH2I	RGCGCY	3 cut(s)	260, 381, 396
BstHHI	GCGC	3 cut(s)	259, 380, 395
BstKTI	GATC	4 cut(s)	181, 198, 224, 294
BstMBI	GATC	4 cut(s)	178, 195, 221, 291
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNI	CCWGG	1 cut(s)	266
BstPI	GGTNACC	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	264
BstUI	CGCG	1 cut(s)	159
BstV2I	GAAGAC	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	17, 317
BveI	ACCTGC	2 cut(s)	141, 193
Cac8I	GCNNGC	1 cut(s)	355
CfoI	GCGC	3 cut(s)	259, 380, 395
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	2 cut(s)	136, 163
Csp6I	GTAC	3 cut(s)	46, 118, 173
CviAII	CATG	2 cut(s)	40, 241
CviJI	RGCY	3 cut(s)	29, 189, 400
CviKI_1	RGCY	3 cut(s)	29, 189, 400
CviQI	GTAC	3 cut(s)	46, 118, 173
DinI	GGCGCC	2 cut(s)	379, 394
DpnI	GATC	4 cut(s)	180, 197, 223, 293
DpnII	GATC	4 cut(s)	178, 195, 221, 291
EciI	GGCGGA	1 cut(s)	372
Eco130I	CCWWGG	2 cut(s)	366, 381
Eco47I	GGWCC	2 cut(s)	136, 163
Eco88I	CYCGRG	1 cut(s)	225
Eco91I	GGTNACC	1 cut(s)	85
EcoO65I	GGTNACC	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	264
EcoT14I	CCWWGG	2 cut(s)	366, 381
EgeI	GGCGCC	2 cut(s)	379, 394
EheI	GGCGCC	2 cut(s)	379, 394
ErhI	CCWWGG	2 cut(s)	366, 381
FaeI	CATG	2 cut(s)	43, 244
FaiI	YATR	2 cut(s)	41, 242
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	2 cut(s)	39, 240
Fnu4HI	GCNGC	2 cut(s)	376, 391
FokI	GGATG	2 cut(s)	4, 304
Fsp4HI	GCNGC	2 cut(s)	376, 391
GlaI	GCGC	3 cut(s)	258, 379, 394
GluI	GCNGC	2 cut(s)	376, 391
HaeII	RGCGCY	3 cut(s)	260, 381, 396
HapII	CCGG	2 cut(s)	24, 354
HhaI	GCGC	3 cut(s)	259, 380, 395
Hin1I	GRCGYC	2 cut(s)	378, 393
Hin1II	CATG	2 cut(s)	43, 244
Hin6I	GCGC	3 cut(s)	257, 378, 393
HinP1I	GCGC	3 cut(s)	257, 378, 393
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	5 cut(s)	14, 32, 59, 122, 360
HpaII	CCGG	2 cut(s)	24, 354
HphI	GGTGA	3 cut(s)	79, 256, 332
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	2 cut(s)	127, 310
Hpy188III	TCNNGA	2 cut(s)	24, 104
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4IV	ACGT	1 cut(s)	252
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	252
Hsp92I	GRCGYC	2 cut(s)	378, 393
Hsp92II	CATG	2 cut(s)	43, 244
HspAI	GCGC	3 cut(s)	257, 378, 393
KasI	GGCGCC	2 cut(s)	377, 392
Kpn2I	TCCGGA	1 cut(s)	23
KroI	GCCGGC	1 cut(s)	353
KroNI	GCCGGC	1 cut(s)	355
Kzo9I	GATC	4 cut(s)	178, 195, 221, 291
LmnI	GCTCC	2 cut(s)	26, 194
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	2 cut(s)	11, 85
MalI	GATC	4 cut(s)	180, 197, 223, 293
MboI	GATC	4 cut(s)	178, 195, 221, 291
MboII	GAAGA	2 cut(s)	88, 259
MluCI	AATT	1 cut(s)	322
Mly113I	GGCGCC	2 cut(s)	378, 393
MlyI	GAGTC	2 cut(s)	8, 41
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	5 cut(s)	31, 103, 121, 154, 287
MreI	CGCCGGCG	1 cut(s)	353
MroI	TCCGGA	1 cut(s)	23
MroNI	GCCGGC	1 cut(s)	353
MspI	CCGG	2 cut(s)	24, 354
MspR9I	CCNGG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	156
NaeI	GCCGGC	1 cut(s)	355
NarI	GGCGCC	2 cut(s)	378, 393
NdeII	GATC	4 cut(s)	178, 195, 221, 291
NgoMIV	GCCGGC	1 cut(s)	353
NlaIII	CATG	2 cut(s)	43, 244
NlaIV	GGNNCC	5 cut(s)	28, 137, 155, 379, 394
NmeAIII	GCCGAG	1 cut(s)	55
NmuCI	GTSAC	2 cut(s)	11, 85
PdiI	GCCGGC	1 cut(s)	355
PfeI	GAWTC	3 cut(s)	59, 122, 360
Pfl23II	CGTACG	1 cut(s)	117
PfoI	TCCNGGA	1 cut(s)	264
PkrI	GCNGC	2 cut(s)	377, 392
PleI	GAGTC	2 cut(s)	8, 40
PluTI	GGCGCC	2 cut(s)	381, 396
PpsI	GAGTC	2 cut(s)	8, 40
Psp6I	CCWGG	1 cut(s)	264
PspEI	GGTNACC	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	264
PspLI	CGTACG	1 cut(s)	117
PspN4I	GGNNCC	5 cut(s)	28, 137, 155, 379, 394
PspPI	GGNCC	2 cut(s)	136, 163
RsaI	GTAC	3 cut(s)	47, 119, 174
RsaNI	GTAC	3 cut(s)	46, 118, 173
SatI	GCNGC	2 cut(s)	376, 391
Sau3AI	GATC	4 cut(s)	178, 195, 221, 291
Sau96I	GGNCC	2 cut(s)	136, 163
ScaI	AGTACT	1 cut(s)	47
SchI	GAGTC	2 cut(s)	8, 41
ScrFI	CCNGG	1 cut(s)	266
SetI	ASST	9 cut(s)	132, 155, 165, 191, 207, 255, 279, 315, 335
SfoI	GGCGCC	2 cut(s)	379, 394
SgrAI	CRCCGGYG	1 cut(s)	353
SinI	GGWCC	2 cut(s)	136, 163
Sse9I	AATT	1 cut(s)	322
SsiI	CCGC	6 cut(s)	90, 148, 157, 357, 375, 390
SspDI	GGCGCC	2 cut(s)	377, 392
StyD4I	CCNGG	1 cut(s)	264
StyI	CCWWGG	2 cut(s)	366, 381
TaaI	ACNGT	1 cut(s)	79
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	1 cut(s)	35
TaqII	GACCGA	1 cut(s)	73
TasI	AATT	1 cut(s)	322
TatI	WGTACW	1 cut(s)	45
TauI	GCSGC	2 cut(s)	378, 393
TfiI	GAWTC	3 cut(s)	59, 122, 360
TseFI	GTSAC	2 cut(s)	11, 85
Tsp45I	GTSAC	2 cut(s)	11, 85
TspDTI	ATGAA	1 cut(s)	306
TspGWI	ACGGA	2 cut(s)	83, 160
VpaK11BI	GGWCC	2 cut(s)	136, 163
ZrmI	AGTACT	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.