Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001652

Physical Location & Seq

Genomic Coordinates Reverse (-)

47105172 .. 47107246

Gene Structure 2075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0354400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGATTGCTATGAAGAGAAAATTCTGGGTACCCGTGCTGCTCCTGGCGTTTCATTTTTTCGCCGCTTCTTCTCAGAGCACAACCGGATGGTTGAACATAGATTGTGGGAGTGACACCCCACGCTTGGACGCCAACACCTTACTCTCATGGGACACAGACAGTGGTTTAATCAAATCAGGCATCAACAAATATGTCTCAGAAAAGCAACAACTCGACGAGATGAACACCGTTCGGTCCTTCCTTAAGGGAAAACAAAATTGTTATAAATTGAAGGTCTACAAAAAAAAGGTGCGCTACTTGATTCGTGCAGGGTTCTGTTATGGCAACTACGATGGTCTCTCTAGTCCTCCAACGTTCGATCTTCATCTGGATGGCAAGAAATGGACAACCGTCAAAACTTCAATGATAGGAGACCCAATATATCGTGAAGCCATATATGAGGCCCGATCAGATCATATTAGCCTGTGCGTTGTCCGAGTTAAGGATGGAGGGGTACCTTTTATTTCTTCAATAGAGGTTGTTCCATTGGAGGCTCCATTTCCTTTGTACCCTAAGATGCAAAGCAGTCACACTTTCAATCTAGAATCTAGGGTAAACTTGGGTGGGGATGAAGTAATAAGGTACACAGGAATCTTATCAGATGAAAAGTACAACCGGATATGGACTCGTGGAGTAACTCCACCAAACTGCGATGAAGTCACTACCGATTCGGATTCCTCCACAGAAAATGAGCCTCCTGATGAGGTGATCGGCGACTCCATAGAATCACAAAATCTCACTAATCCGATAACCTTGTCCGTTGATATCTCACAAACGCCAACTCCACAATCAGCTTACATTGTGCTCTATTTCGCCGAAAAGACATTCCTAGAAGCTGGAGACATCAGAATAATTCAAATCTACATCGACGACCATATGAAGTCCACAGTGACACTTGAGTTCAACAAATGCAAGGTGATCACCATATATCCTGTGATTCCTGTTGGTCCTAGGATGAGTGTGACTTTGGCCTCGGACAGTGGTTCCAACCTACCTCCGATGATCAGTGCAATGGAAGTGTTCACAACGTTAGATAAAAGCTCCGCTCCTATCCTCCACTGTCGCTTCTTCTGTGCACTCATTAATTTCGTAATTTCTTGTACCTGTTTGTTTCTGTTTTTAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

388

Amino Acids

43.47

Weight (kDa)

5.76

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	33 - 355	5.2e-63	Malectin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13120 AT5G13120
fragaria_vesca	FvH4_4g23300
malus_domestica	MD13G1123100.v1.1 MD15G1288900.v1.1 MD16G1123800.v1.1
prunus_persica	Prupe.1G221800_v2.0.a1 Prupe.1G221800_v2.0.a1 Prupe.1G221800_v2.0.a1
pyrus_communis	pycom03g09380 pycom07g05330 pycom07g05380 pycom13g10750 pycom15g24270 pycom16g10580
rosa_chinensis	RchiOBHm_Chr4g0429661 RchiOBHm_Chr5g0043491 RchiOBHm_Chr5g0043561 RchiOBHm_Chr6g0254041 RchiOBHm_Chr7g0205991
rosa_laevigata	RLG00000007054
rosa_multiflora	Rmu_co8235611.1_g000001 Rmu_sc0006590.1_g000005 Rmu_sc0010349.1_g000005 Rmu_sc0024031.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433360 Rroxscaffold_2G00113860 Rroxscaffold_4G00286780 Rroxscaffold_5G00371340
rosa_rugosa	Rorug01G0354400 Rorug04G0237500
rosa_samantha	Rh1AG363000 Rh2AG208100 Rh2BG430300 Rh4AG293600 Rh4BG299400 Rh4CG315200 Rh4DG296500 Rh5AG191200 Rh5BG299100 Rh6CG120300 Rh6DG108100 Rh7AG305600 Rh7CG324700
rosa_wichuraiana	Rw2G028480 Rw4G025410 Rw5G017430 Rw6G019830 Rw7G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	264
Acc65I	GGTACC	2 cut(s)	28, 493
AccB1I	GGYRCC	2 cut(s)	28, 493
AccBSI	CCGCTC	1 cut(s)	1085
AccI	GTMKAC	1 cut(s)	276
AciI	CCGC	2 cut(s)	63, 1083
AclI	AACGTT	2 cut(s)	353, 1067
AcsI	RAATTY	1 cut(s)	20
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	6 cut(s)	30, 495, 548, 623, 650, 1141
AfiI	CCNNNNNNNGG	2 cut(s)	124, 481
AflII	CTTAAG	1 cut(s)	242
AgsI	TTSAA	7 cut(s)	94, 271, 402, 510, 577, 896, 943
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	3 cut(s)	833, 875, 1080
AluI	AGCT	3 cut(s)	833, 875, 1080
Alw21I	GWGCWC	3 cut(s)	80, 846, 1117
Alw26I	GTCTC	4 cut(s)	199, 341, 405, 873
Alw44I	GTGCAC	1 cut(s)	1113
AoxI	GGCC	2 cut(s)	441, 1008
ApaLI	GTGCAC	1 cut(s)	1113
ApeKI	GCWGC	1 cut(s)	37
ApoI	RAATTY	1 cut(s)	20
AseI	ATTAAT	1 cut(s)	1122
Asp718I	GGTACC	2 cut(s)	28, 493
AspA2I	CCTAGG	1 cut(s)	989
AspLEI	GCGC	1 cut(s)	294
AspS9I	GGNCC	3 cut(s)	234, 442, 986
AsuHPI	GGTGA	3 cut(s)	757, 952, 967
AvaII	GGWCC	2 cut(s)	234, 986
AvrII	CCTAGG	1 cut(s)	989
BaeGI	GKGCMC	1 cut(s)	1117
BanI	GGYRCC	2 cut(s)	28, 493
BauI	CACGAG	1 cut(s)	666
Bbv12I	GWGCWC	3 cut(s)	80, 846, 1117
BbvI	GCAGC	1 cut(s)	24
BccI	CCATC	4 cut(s)	81, 326, 365, 479
BciT130I	CCWGG	1 cut(s)	44
BclI	TGATCA	2 cut(s)	957, 1041
BcoDI	GTCTC	4 cut(s)	199, 341, 405, 873
BfaI	CTAG	5 cut(s)	342, 581, 588, 869, 990
BfrI	CTTAAG	1 cut(s)	242
BisI	GCNGC	2 cut(s)	38, 63
BlnI	CCTAGG	1 cut(s)	989
BlsI	GCNGC	2 cut(s)	39, 64
Bme1390I	CCNGG	1 cut(s)	44
Bme18I	GGWCC	2 cut(s)	234, 986
BmgT120I	GGNCC	3 cut(s)	234, 442, 986
BmiI	GGNNCC	4 cut(s)	30, 495, 534, 1024
BmrFI	CCNGG	1 cut(s)	44
BmsI	GCATC	2 cut(s)	189, 546
BoxI	GACNNNNGTC	1 cut(s)	389
BpmI	CTGGAG	1 cut(s)	897
BpuEI	CTTGAG	1 cut(s)	956
BsaBI	GATNNNNATC	1 cut(s)	363
BsaHI	GRCGYC	1 cut(s)	129
BsaI	GGTCTC	2 cut(s)	341, 405
BsaJI	CCNNGG	2 cut(s)	989, 1011
BsaWI	WCCGGW	2 cut(s)	83, 654
BsaXI	ACNNNNNCTCC	2 cut(s)	805, 835
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 481
Bse3DI	GCAATG	1 cut(s)	1056
Bse8I	GATNNNNATC	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	2 cut(s)	989, 1011
BseGI	GGATG	5 cut(s)	92, 376, 490, 613, 999
BseJI	GATNNNNATC	1 cut(s)	363
BseLI	CCNNNNNNNGG	2 cut(s)	124, 481
BseMI	GCAATG	1 cut(s)	1056
BseMII	CTCAG	2 cut(s)	86, 210
BseSI	GKGCMC	1 cut(s)	1117
BseXI	GCAGC	1 cut(s)	24
BsgI	GTGCAG	1 cut(s)	327
BshFI	GGCC	2 cut(s)	443, 1010
BshNI	GGYRCC	2 cut(s)	28, 493
BsiHKAI	GWGCWC	3 cut(s)	80, 846, 1117
BsiSI	CCGG	2 cut(s)	84, 655
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	124, 481
BsmAI	GTCTC	4 cut(s)	199, 341, 405, 873
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	2 cut(s)	443, 1010
Bso31I	GGTCTC	2 cut(s)	341, 405
Bsp1286I	GDGCHC	3 cut(s)	80, 846, 1117
Bsp143I	GATC	6 cut(s)	358, 446, 451, 747, 957, 1041
BspACI	CCGC	2 cut(s)	63, 1083
BspANI	GGCC	2 cut(s)	443, 1010
BspCNI	CTCAG	2 cut(s)	85, 209
BspLI	GGNNCC	4 cut(s)	30, 495, 534, 1024
BspT107I	GGYRCC	2 cut(s)	28, 493
BspTI	CTTAAG	1 cut(s)	242
BspTNI	GGTCTC	2 cut(s)	341, 405
BsrBI	CCGCTC	1 cut(s)	1085
BsrDI	GCAATG	1 cut(s)	1056
BssECI	CCNNGG	2 cut(s)	989, 1011
BssMI	GATC	6 cut(s)	358, 446, 451, 747, 957, 1041
BssNI	GRCGYC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	666
BssT1I	CCWWGG	1 cut(s)	989
Bst2BI	CACGAG	1 cut(s)	666
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	6 cut(s)	161, 229, 391, 928, 1019, 1100
Bst6I	CTCTTC	1 cut(s)	8
BstACI	GRCGYC	1 cut(s)	129
BstAFI	CTTAAG	1 cut(s)	242
BstDEI	CTNAG	3 cut(s)	72, 196, 552
BstF5I	GGATG	5 cut(s)	92, 376, 490, 613, 999
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	6 cut(s)	361, 449, 454, 750, 960, 1044
BstMAI	GTCTC	4 cut(s)	199, 341, 405, 873
BstMBI	GATC	6 cut(s)	358, 446, 451, 747, 957, 1041
BstNI	CCWGG	1 cut(s)	44
BstPAI	GACNNNNGTC	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	42
BstSLI	GKGCMC	1 cut(s)	1117
BstV1I	GCAGC	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	443, 1010
BtgZI	GCGATG	1 cut(s)	705
BtsCI	GGATG	5 cut(s)	92, 376, 490, 613, 999
BtsIMutI	CAGTG	5 cut(s)	166, 933, 1024, 1051, 1096
CfoI	GCGC	1 cut(s)	294
Cfr13I	GGNCC	3 cut(s)	234, 442, 986
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	6 cut(s)	29, 494, 547, 622, 649, 1140
CviAII	CATG	1 cut(s)	147
CviQI	GTAC	6 cut(s)	29, 494, 547, 622, 649, 1140
DdeI	CTNAG	3 cut(s)	72, 196, 552
DpnI	GATC	6 cut(s)	360, 448, 453, 749, 959, 1043
DpnII	GATC	6 cut(s)	358, 446, 451, 747, 957, 1041
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	989
Eco31I	GGTCTC	2 cut(s)	341, 405
Eco32I	GATATC	1 cut(s)	805
Eco47I	GGWCC	2 cut(s)	234, 986
EcoRII	CCWGG	1 cut(s)	42
EcoRV	GATATC	1 cut(s)	805
EcoT14I	CCWWGG	1 cut(s)	989
ErhI	CCWWGG	1 cut(s)	989
FaeI	CATG	1 cut(s)	150
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	1 cut(s)	146
FauNDI	CATATG	1 cut(s)	915
FbaI	TGATCA	2 cut(s)	957, 1041
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	2 cut(s)	38, 63
FokI	GGATG	5 cut(s)	99, 383, 497, 620, 1006
Fsp4HI	GCNGC	2 cut(s)	38, 63
FspBI	CTAG	5 cut(s)	342, 581, 588, 869, 990
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	2 cut(s)	38, 63
GsuI	CTGGAG	1 cut(s)	897
HaeIII	GGCC	2 cut(s)	443, 1010
HapII	CCGG	2 cut(s)	84, 655
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	294
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	1 cut(s)	150
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HinfI	GANTC	9 cut(s)	301, 584, 630, 664, 707, 713, 755, 764, 976
HpaII	CCGG	2 cut(s)	84, 655
HphI	GGTGA	3 cut(s)	757, 952, 967
Hpy166II	GTNNAC	6 cut(s)	277, 595, 624, 924, 1062, 1115
Hpy188III	TCNNGA	4 cut(s)	368, 425, 581, 737
Hpy8I	GTNNAC	6 cut(s)	277, 595, 624, 924, 1062, 1115
Hpy99I	CGWCG	2 cut(s)	218, 911
HpyAV	CCTTC	2 cut(s)	247, 265
HpyCH4III	ACNGT	6 cut(s)	161, 229, 391, 928, 1019, 1100
HpyCH4IV	ACGT	2 cut(s)	353, 1067
HpyCH4V	TGCA	5 cut(s)	308, 559, 951, 1049, 1115
HpyF3I	CTNAG	3 cut(s)	72, 196, 552
HpySE526I	ACGT	2 cut(s)	353, 1067
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	150
HspAI	GCGC	1 cut(s)	292
KpnI	GGTACC	2 cut(s)	32, 497
Ksp22I	TGATCA	2 cut(s)	957, 1041
Kzo9I	GATC	6 cut(s)	358, 446, 451, 747, 957, 1041
LmnI	GCTCC	4 cut(s)	45, 538, 1085, 1090
Lsp1109I	GCAGC	1 cut(s)	24
LweI	GCATC	2 cut(s)	189, 546
MaeI	CTAG	5 cut(s)	342, 581, 588, 869, 990
MaeII	ACGT	2 cut(s)	353, 1067
MaeIII	GTNAC	6 cut(s)	110, 566, 673, 697, 928, 1000
MalI	GATC	6 cut(s)	360, 448, 453, 749, 959, 1043
MbiI	CCGCTC	1 cut(s)	1085
MboI	GATC	6 cut(s)	358, 446, 451, 747, 957, 1041
MboII	GAAGA	5 cut(s)	25, 60, 353, 498, 1099
MhlI	GDGCHC	3 cut(s)	80, 846, 1117
MluCI	AATT	6 cut(s)	20, 256, 266, 891, 1123, 1131
MlyI	GAGTC	2 cut(s)	658, 749
MmeI	TCCRAC	2 cut(s)	374, 1050
MseI	TTAA	4 cut(s)	167, 243, 480, 1122
MslI	CAYNNNNRTG	1 cut(s)	369
MspCI	CTTAAG	1 cut(s)	242
MspI	CCGG	2 cut(s)	84, 655
MspR9I	CCNGG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	44
NdeI	CATATG	1 cut(s)	915
NdeII	GATC	6 cut(s)	358, 446, 451, 747, 957, 1041
NlaIII	CATG	1 cut(s)	150
NlaIV	GGNNCC	4 cut(s)	30, 495, 534, 1024
NmuCI	GTSAC	5 cut(s)	110, 566, 697, 928, 1000
PfeI	GAWTC	7 cut(s)	301, 584, 630, 707, 713, 764, 976
PkrI	GCNGC	2 cut(s)	39, 64
PleI	GAGTC	2 cut(s)	658, 749
PpsI	GAGTC	2 cut(s)	658, 749
PshAI	GACNNNNGTC	1 cut(s)	389
PshBI	ATTAAT	1 cut(s)	1122
PsiI	TTATAA	1 cut(s)	264
Psp1406I	AACGTT	2 cut(s)	353, 1067
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	4 cut(s)	30, 495, 534, 1024
PspPI	GGNCC	3 cut(s)	234, 442, 986
RsaI	GTAC	6 cut(s)	30, 495, 548, 623, 650, 1141
RsaNI	GTAC	6 cut(s)	29, 494, 547, 622, 649, 1140
RseI	CAYNNNNRTG	1 cut(s)	369
SaqAI	TTAA	4 cut(s)	167, 243, 480, 1122
SatI	GCNGC	2 cut(s)	38, 63
Sau3AI	GATC	6 cut(s)	358, 446, 451, 747, 957, 1041
Sau96I	GGNCC	3 cut(s)	234, 442, 986
SchI	GAGTC	2 cut(s)	658, 749
ScrFI	CCNGG	1 cut(s)	44
SduI	GDGCHC	3 cut(s)	80, 846, 1117
SfaNI	GCATC	2 cut(s)	189, 546
SinI	GGWCC	2 cut(s)	234, 986
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	2 cut(s)	242, 935
SmoI	CTYRAG	2 cut(s)	242, 935
Sse9I	AATT	6 cut(s)	20, 256, 266, 891, 1123, 1131
SsiI	CCGC	2 cut(s)	63, 1083
SspMI	CTAG	5 cut(s)	342, 581, 588, 869, 990
StyD4I	CCNGG	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	989
TaaI	ACNGT	6 cut(s)	161, 229, 391, 928, 1019, 1100
TaiI	ACGT	2 cut(s)	356, 1070
TaqI	TCGA	3 cut(s)	213, 357, 906
TaqII	GACCGA	1 cut(s)	222
TasI	AATT	6 cut(s)	20, 256, 266, 891, 1123, 1131
TatI	WGTACW	1 cut(s)	648
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	7 cut(s)	301, 584, 630, 707, 713, 764, 976
Tru1I	TTAA	4 cut(s)	167, 243, 480, 1122
Tru9I	TTAA	4 cut(s)	167, 243, 480, 1122
TscAI	CASTG	5 cut(s)	166, 933, 1024, 1051, 1103
TseFI	GTSAC	5 cut(s)	110, 566, 697, 928, 1000
TseI	GCWGC	1 cut(s)	37
Tsp45I	GTSAC	5 cut(s)	110, 566, 697, 928, 1000
TspDTI	ATGAA	8 cut(s)	26, 41, 236, 353, 624, 657, 708, 932
TspGWI	ACGGA	1 cut(s)	787
TspRI	CASTG	5 cut(s)	166, 933, 1024, 1051, 1103
Vha464I	CTTAAG	1 cut(s)	242
VneI	GTGCAC	1 cut(s)	1113
VpaK11BI	GGWCC	2 cut(s)	234, 986
VspI	ATTAAT	1 cut(s)	1122
XapI	RAATTY	1 cut(s)	20
XbaI	TCTAGA	1 cut(s)	580
XmaJI	CCTAGG	1 cut(s)	989
XmiI	GTMKAC	1 cut(s)	276
XspI	CTAG	5 cut(s)	342, 581, 588, 869, 990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.